Wall clock time and date at job start Tue Mar 31 2020 23:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47587 * 2 1 4 4 O 1.42907 * 109.46882 * 119.99838 * 2 1 3 5 5 C 1.53001 * 109.47409 * 239.99291 * 2 1 3 6 6 C 1.50693 * 109.47118 * 175.00309 * 5 2 1 7 7 O 1.21282 * 120.00308 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99854 * 180.02562 * 6 5 2 9 9 C 1.47084 * 125.62927 * 359.97438 * 8 6 5 10 10 C 1.54469 * 107.29850 * 179.02882 * 9 8 6 11 11 C 1.54308 * 102.87242 * 338.54538 * 10 9 8 12 12 C 1.47584 * 125.62762 * 179.97438 * 8 6 5 13 13 C 1.52019 * 110.69384 * 152.79020 * 11 10 9 14 14 N 1.46277 * 109.96489 * 170.21093 * 13 11 10 15 15 C 1.46503 * 118.81399 * 162.92049 * 14 13 11 16 16 C 1.53003 * 109.47043 * 270.00072 * 15 14 13 17 17 C 1.50702 * 109.47052 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99927 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99516 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00708 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99359 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47408 * 90.00078 * 21 19 17 23 23 H 1.48508 * 109.46924 * 210.00037 * 21 19 17 24 24 H 1.48503 * 109.47411 * 330.00056 * 21 19 17 25 25 C 1.33835 * 122.36622 * 342.92132 * 14 13 11 26 26 O 1.21281 * 118.61224 * 182.98616 * 25 14 13 27 27 C 1.50276 * 122.76685 * 2.70462 * 25 14 13 28 28 O 1.42098 * 110.71680 * 276.30164 * 11 10 9 29 29 H 1.09004 * 109.46469 * 60.00712 * 1 2 3 30 30 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47115 * 300.00380 * 1 2 3 32 32 H 0.96701 * 113.99689 * 300.00039 * 4 2 1 33 33 H 1.09001 * 109.46523 * 55.00310 * 5 2 1 34 34 H 1.08999 * 109.47334 * 295.00712 * 5 2 1 35 35 H 1.09001 * 109.88297 * 59.60162 * 9 8 6 36 36 H 1.09006 * 109.87472 * 298.45170 * 9 8 6 37 37 H 1.08998 * 110.73509 * 220.19868 * 10 9 8 38 38 H 1.08999 * 110.88664 * 96.95924 * 10 9 8 39 39 H 1.08998 * 110.37452 * 84.42171 * 12 8 6 40 40 H 1.08995 * 110.37585 * 322.06953 * 12 8 6 41 41 H 1.08998 * 109.39356 * 290.36628 * 13 11 10 42 42 H 1.09004 * 109.38661 * 50.05755 * 13 11 10 43 43 H 1.08994 * 109.47506 * 29.99865 * 15 14 13 44 44 H 1.09003 * 109.46887 * 150.00090 * 15 14 13 45 45 H 1.09002 * 109.46655 * 299.99904 * 16 15 14 46 46 H 1.08994 * 109.47420 * 60.00015 * 16 15 14 47 47 H 0.96996 * 120.00565 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.39093 * 103.44325 * 27 25 14 49 49 H 1.09002 * 109.38718 * 223.24635 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0401 -0.7214 -1.2491 6 6 3.5420 -0.6151 -1.3125 7 8 4.1451 -0.0213 -0.4439 8 7 4.2150 -1.1800 -2.3346 9 6 3.6117 -1.9262 -3.4493 10 6 4.7607 -2.3622 -4.3852 11 6 5.8882 -1.3703 -4.0305 12 6 5.6789 -1.1519 -2.5199 13 6 7.2510 -1.9863 -4.3030 14 7 8.2927 -0.9661 -4.1859 15 6 9.6856 -1.3936 -4.0325 16 6 10.0118 -1.5450 -2.5453 17 6 11.4448 -1.9841 -2.3876 18 1 12.0610 -2.1400 -3.2606 19 6 11.9689 -2.1868 -1.1285 20 7 11.2187 -1.9965 -0.0653 21 14 13.7450 -2.7318 -0.9330 22 1 14.6214 -1.5371 -0.8345 23 1 13.8795 -3.5475 0.3007 24 1 14.1459 -3.5442 -2.1097 25 6 8.0192 0.3437 -4.2137 26 8 8.9408 1.1306 -4.1661 27 6 6.6186 0.8802 -4.3077 28 8 5.7287 -0.1518 -4.7440 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7210 -0.2701 1.9980 33 1 1.6055 -0.2619 -2.1369 34 1 1.7517 -1.7716 -1.2055 35 1 2.9156 -1.2854 -3.9906 36 1 3.0905 -2.8044 -3.0683 37 1 4.4684 -2.2566 -5.4300 38 1 5.0671 -3.3865 -4.1733 39 1 6.1488 -1.9547 -1.9518 40 1 6.0813 -0.1853 -2.2167 41 1 7.4399 -2.7809 -3.5812 42 1 7.2647 -2.4035 -5.3100 43 1 9.8297 -2.3499 -4.5352 44 1 10.3455 -0.6473 -4.4751 45 1 9.8677 -0.5887 -2.0426 46 1 9.3520 -2.2912 -2.1028 47 1 11.5874 -2.1395 0.8204 48 1 6.3027 1.2406 -3.3287 49 1 6.5937 1.7035 -5.0217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270413734.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:44 Heat of formation + Delta-G solvation = -186.774405 kcal Electronic energy + Delta-G solvation = -31187.657991 eV Core-core repulsion = 26920.763492 eV Total energy + Delta-G solvation = -4266.894499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39529 -40.90739 -39.61000 -38.08945 -37.15824 -37.05253 -35.17507 -33.48147 -32.75361 -31.99136 -30.29947 -29.52380 -28.83461 -27.18673 -26.32093 -24.48887 -23.48216 -22.52878 -21.93532 -20.35042 -19.74074 -19.03947 -18.73015 -18.47176 -18.27977 -17.54998 -17.11935 -16.86429 -16.56085 -16.47144 -16.29479 -15.77401 -15.54072 -15.28499 -14.83436 -14.69145 -14.64822 -14.55836 -14.35565 -14.01259 -13.83784 -13.70053 -13.44223 -13.39714 -13.14259 -12.89962 -12.89619 -12.83961 -12.73680 -12.61064 -12.31892 -12.13258 -11.93338 -11.88051 -11.83018 -11.51724 -11.40776 -10.98979 -10.85158 -10.63705 -10.51082 -9.73766 -9.69855 -8.26040 -6.39498 1.35303 1.37940 1.39699 1.50359 1.62391 1.81083 1.87021 2.35656 2.40112 3.07468 3.08650 3.24966 3.34515 3.41710 3.56114 3.73397 3.89892 3.98173 4.10515 4.19407 4.22017 4.27340 4.32759 4.35843 4.38579 4.45044 4.52026 4.57714 4.63065 4.66467 4.68512 4.80266 4.86511 4.94820 5.01744 5.03250 5.06497 5.13934 5.21603 5.32215 5.39468 5.50370 5.68933 5.77052 6.11489 6.34620 6.47289 6.75955 6.89845 6.97794 7.15117 7.30666 8.86024 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.002998 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.521770 B = 9336.662416 C =10699.714575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 H 0.041 0.959 4 O -0.586 6.586 5 C -0.120 4.120 6 C 0.515 3.485 7 O -0.588 6.588 8 N -0.618 5.618 9 C 0.096 3.904 10 C -0.100 4.100 11 C 0.091 3.909 12 C 0.079 3.921 13 C 0.093 3.907 14 N -0.601 5.601 15 C 0.128 3.872 16 C 0.027 3.973 17 C -0.542 4.542 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.254 1.254 25 C 0.471 3.529 26 O -0.591 6.591 27 C 0.062 3.938 28 O -0.338 6.338 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.389 0.611 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.057 0.943 45 H -0.033 1.033 46 H -0.001 1.001 47 H 0.263 0.737 48 H 0.081 0.919 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.962 -2.858 -10.780 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.047 3.953 3 H 0.059 0.941 4 O -0.394 6.394 5 C -0.159 4.159 6 C 0.306 3.694 7 O -0.468 6.468 8 N -0.352 5.352 9 C -0.025 4.025 10 C -0.137 4.137 11 C 0.050 3.950 12 C -0.045 4.045 13 C -0.029 4.029 14 N -0.332 5.332 15 C 0.006 3.994 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.177 1.177 25 C 0.259 3.741 26 O -0.473 6.473 27 C -0.017 4.017 28 O -0.256 6.256 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.115 0.885 44 H 0.076 0.924 45 H -0.015 1.015 46 H 0.018 0.982 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.139 -2.513 -10.676 29.271 hybrid contribution 1.514 0.626 1.754 2.400 sum -25.625 -1.886 -8.923 27.200 Atomic orbital electron populations 1.22426 0.93121 1.03620 1.03941 1.21633 0.94134 0.94604 0.84933 0.94050 1.86547 1.78233 1.57621 1.16989 1.21841 0.88483 1.05459 1.00135 1.21236 0.91638 0.77195 0.79352 1.90736 1.71624 1.44699 1.39750 1.48652 1.06264 1.55045 1.25269 1.22474 0.96642 0.97156 0.86197 1.22724 0.90495 0.97690 1.02835 1.22331 0.96136 0.87210 0.89315 1.22625 0.83276 1.01433 0.97177 1.22215 0.84492 0.90960 1.05276 1.47806 1.09260 1.05911 1.70211 1.21527 0.80446 0.99931 0.97521 1.19152 0.96032 0.93934 0.91950 1.21537 0.97569 1.45949 0.93014 0.91326 1.26061 1.03064 0.95322 0.95531 1.70131 1.38568 1.50142 0.98598 0.85356 0.78512 0.78371 0.78250 1.20345 1.20566 1.17727 1.21558 0.93326 0.82891 0.76298 1.90716 1.47820 1.56446 1.52321 1.22752 0.82894 0.92222 1.03817 1.87963 1.58091 1.20463 1.59079 0.89675 0.91091 0.91448 0.76237 0.84039 0.86255 0.88252 0.88065 0.85222 0.86161 0.91741 0.93763 0.89012 0.86502 0.88519 0.92449 1.01450 0.98240 0.92785 0.90170 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.54 71.98 0.69 -0.91 16 2 C 0.11 1.86 3.13 30.60 0.10 1.96 16 3 H 0.04 0.88 7.95 -2.39 -0.02 0.86 16 4 O -0.59 -13.60 12.55 -135.18 -1.70 -15.30 16 5 C -0.12 -1.86 4.60 29.85 0.14 -1.73 16 6 C 0.51 14.03 7.73 87.65 0.68 14.71 16 7 O -0.59 -23.34 15.69 10.76 0.17 -23.17 16 8 N -0.62 -14.26 3.33 -812.61 -2.71 -16.96 16 9 C 0.10 1.04 6.50 86.77 0.56 1.61 16 10 C -0.10 -1.02 6.12 31.54 0.19 -0.83 16 11 C 0.09 1.95 0.82 -10.31 -0.01 1.95 16 12 C 0.08 2.31 5.75 86.53 0.50 2.81 16 13 C 0.09 2.30 5.35 86.10 0.46 2.76 16 14 N -0.60 -21.92 2.83 -826.21 -2.34 -24.26 16 15 C 0.13 5.57 5.27 86.38 0.46 6.03 16 16 C 0.03 1.52 5.29 29.85 0.16 1.68 16 17 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 18 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 19 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 20 N -0.93 -59.89 13.29 21.45 0.28 -59.60 16 21 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.25 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.47 18.34 7.44 87.67 0.65 18.99 16 26 O -0.59 -28.95 16.33 -3.03 -0.05 -29.00 16 27 C 0.06 1.78 6.37 71.10 0.45 2.23 16 28 O -0.34 -7.76 10.43 -148.98 -1.55 -9.32 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.39 5.97 9.08 -74.06 -0.67 5.30 16 33 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.12 0.81 8.01 -2.39 -0.02 0.79 16 39 H 0.06 2.13 7.79 -2.39 -0.02 2.11 16 40 H 0.04 1.65 5.87 -2.39 -0.01 1.64 16 41 H 0.09 2.34 7.82 -2.39 -0.02 2.32 16 42 H 0.12 2.08 8.13 -2.38 -0.02 2.06 16 43 H 0.10 3.60 8.04 -2.39 -0.02 3.58 16 44 H 0.06 2.74 7.22 -2.39 -0.02 2.72 16 45 H -0.03 -2.17 8.14 -2.39 -0.02 -2.19 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 48 H 0.08 2.47 6.63 -2.39 -0.02 2.46 16 49 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 Total: -1.00 -94.75 395.93 0.13 -94.62 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.28 Total: 15.31 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.72 Total: 19.93 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.76 Total: -100.83 kcal Atomic # 8 Polarization: -73.65 SS G_CDS: -3.13 Total: -76.78 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -94.75 0.13 -94.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270413734.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.154 kcal (2) G-P(sol) polarization free energy of solvation -94.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds