Wall clock time and date at job start Tue Mar 31 2020 23:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00132 * 2 1 4 4 H 1.08999 * 109.47142 * 29.99610 * 3 2 1 5 5 C 1.53001 * 109.46866 * 269.99912 * 3 2 1 6 6 C 1.52995 * 109.47454 * 149.99904 * 3 2 1 7 7 C 1.50703 * 109.46846 * 295.00035 * 6 3 2 8 8 O 1.21276 * 120.00126 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99534 * 179.97438 * 7 6 3 10 10 C 1.47665 * 134.45641 * 179.97438 * 9 7 6 11 11 C 1.53506 * 85.98374 * 155.70189 * 10 9 7 12 12 C 1.47668 * 134.46205 * 0.02568 * 9 7 6 13 13 C 1.52919 * 113.71147 * 269.13019 * 11 10 9 14 14 O 1.43388 * 108.12511 * 274.08017 * 13 11 10 15 15 C 1.42819 * 113.34442 * 294.21590 * 14 13 11 16 16 C 1.50284 * 110.49421 * 51.31407 * 15 14 13 17 17 O 1.21278 * 118.97047 * 161.59956 * 16 15 14 18 18 N 1.34273 * 122.05539 * 341.57765 * 16 15 14 19 19 C 1.46499 * 119.37694 * 181.99530 * 18 16 15 20 20 C 1.53000 * 109.46840 * 90.00303 * 19 18 16 21 21 C 1.50703 * 109.46912 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99776 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00114 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99955 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46725 * 60.00489 * 25 23 21 27 27 H 1.48505 * 109.46988 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47116 * 300.00464 * 25 23 21 29 29 H 1.09000 * 109.46910 * 300.00311 * 1 2 3 30 30 H 1.09001 * 109.47122 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46993 * 299.99789 * 5 3 2 33 33 H 1.08997 * 109.47437 * 60.00178 * 5 3 2 34 34 H 1.09000 * 109.47285 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47464 * 174.99750 * 6 3 2 36 36 H 1.09000 * 109.46930 * 54.99541 * 6 3 2 37 37 H 1.08997 * 113.79249 * 41.43426 * 10 9 7 38 38 H 1.09001 * 113.79166 * 269.96498 * 10 9 7 39 39 H 1.09000 * 113.79098 * 90.03395 * 12 9 7 40 40 H 1.09001 * 113.79122 * 318.57141 * 12 9 7 41 41 H 1.09000 * 109.91903 * 154.34681 * 13 11 10 42 42 H 1.08994 * 109.62711 * 33.64773 * 13 11 10 43 43 H 1.08998 * 109.27207 * 291.05131 * 15 14 13 44 44 H 1.09006 * 109.26657 * 171.57248 * 15 14 13 45 45 H 1.09002 * 109.47391 * 329.99973 * 19 18 16 46 46 H 1.09001 * 109.46813 * 210.00029 * 19 18 16 47 47 H 1.09001 * 109.47194 * 299.99493 * 20 19 18 48 48 H 1.08992 * 109.47399 * 59.99666 * 20 19 18 49 49 H 0.97000 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1415 0.9236 2.1733 8 8 2.0186 0.7344 2.5903 9 7 4.1952 0.8302 3.0085 10 6 4.3525 0.5268 4.4450 11 6 5.7767 0.0815 4.0846 12 6 5.6550 0.9910 2.8539 13 6 5.8870 -1.4035 3.7364 14 8 6.0645 -2.1356 4.9564 15 6 7.3015 -1.8522 5.6117 16 6 7.4850 -0.3691 5.7706 17 8 8.2873 0.0398 6.5830 18 7 6.7888 0.5173 5.0410 19 6 7.0460 1.9493 5.2127 20 6 8.1429 2.3904 4.2416 21 6 8.4071 3.8636 4.4178 22 1 7.8488 4.4286 5.1496 23 6 9.3623 4.4899 3.6455 24 7 10.0424 3.8019 2.7548 25 14 9.6892 6.3162 3.8635 26 1 10.1276 6.5775 5.2581 27 1 10.7540 6.7443 2.9209 28 1 8.4458 7.0784 3.5844 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8830 1.0773 -1.9563 33 1 1.2569 1.8014 -1.9564 34 1 2.6615 2.7668 -1.4426 35 1 3.8427 2.2369 0.6443 36 1 3.9931 0.5051 0.2618 37 1 3.7139 -0.2838 4.7958 38 1 4.3164 1.4071 5.0869 39 1 6.0056 2.0091 3.0233 40 1 6.0517 0.5494 1.9397 41 1 6.7421 -1.5687 3.0809 42 1 4.9739 -1.7320 3.2401 43 1 8.1230 -2.2549 5.0192 44 1 7.3036 -2.3224 6.5951 45 1 7.3685 2.1404 6.2363 46 1 6.1334 2.5094 5.0088 47 1 9.0555 1.8304 4.4455 48 1 7.8204 2.1994 3.2181 49 1 10.7147 4.2424 2.2117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271199403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:40 Heat of formation + Delta-G solvation = -116.606736 kcal Electronic energy + Delta-G solvation = -31330.812299 eV Core-core repulsion = 27066.960499 eV Total energy + Delta-G solvation = -4263.851801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44484 -39.68431 -38.53754 -37.57528 -37.21658 -34.78687 -33.10105 -32.93770 -30.60622 -29.86181 -28.64874 -27.49082 -26.78295 -26.25142 -26.07238 -24.30359 -22.26355 -21.37227 -21.17463 -19.05984 -18.32043 -18.02066 -17.16212 -16.98621 -16.69369 -16.28156 -16.13858 -15.56333 -15.48569 -15.20373 -14.79351 -14.73099 -14.48794 -14.32871 -14.09976 -13.47964 -13.38621 -13.25410 -13.10371 -12.81435 -12.70496 -12.42032 -12.30197 -12.16999 -12.10809 -11.83974 -11.63376 -11.57956 -11.47512 -11.07778 -10.98182 -10.88709 -10.80556 -10.47832 -10.05129 -9.98853 -9.85539 -9.70251 -9.42482 -9.16323 -8.68099 -8.45299 -8.28516 -6.11809 -4.15258 2.56978 2.64729 2.73690 3.19330 3.27007 3.31994 3.35116 3.58604 3.65852 4.15953 4.25852 4.35805 4.41053 4.59603 4.61560 4.69648 4.96708 5.02480 5.07741 5.19898 5.24878 5.27542 5.29468 5.32655 5.33472 5.35964 5.43593 5.48523 5.49668 5.55448 5.58536 5.63042 5.70088 5.79260 5.88826 5.92234 5.96458 6.37388 6.52565 6.66908 6.75382 7.09792 7.39798 7.56120 7.64046 7.75638 7.86633 8.15197 8.21929 8.36654 8.90435 9.49532 10.99185 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003811 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.123078 B = 7344.832351 C = 9907.343358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.137 4.137 7 C 0.545 3.455 8 O -0.536 6.536 9 N -0.645 5.645 10 C 0.107 3.893 11 C 0.102 3.898 12 C 0.095 3.905 13 C 0.076 3.924 14 O -0.368 6.368 15 C 0.047 3.953 16 C 0.485 3.515 17 O -0.530 6.530 18 N -0.585 5.585 19 C 0.110 3.890 20 C 0.013 3.987 21 C -0.524 4.524 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.892 5.892 25 Si 0.893 3.107 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 -9.660 -6.150 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.042 3.958 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.176 4.176 7 C 0.335 3.665 8 O -0.413 6.413 9 N -0.382 5.382 10 C -0.017 4.017 11 C 0.014 3.986 12 C -0.028 4.028 13 C -0.002 4.002 14 O -0.286 6.286 15 C -0.033 4.033 16 C 0.272 3.728 17 O -0.407 6.407 18 N -0.318 5.318 19 C -0.010 4.010 20 C -0.025 4.025 21 C -0.563 4.563 22 H 0.074 0.926 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.721 3.279 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.146 0.854 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.319 -9.813 -5.689 18.267 hybrid contribution 0.392 1.605 -0.154 1.659 sum -13.927 -8.208 -5.843 17.189 Atomic orbital electron populations 1.22681 0.81155 1.02335 0.99665 1.87879 1.19692 1.27088 1.94962 1.21791 0.93507 0.85726 0.94730 0.91435 1.22300 1.02533 1.01917 0.96524 1.21824 0.99007 1.04861 0.91955 1.20145 0.82925 0.76048 0.87403 1.90684 1.22460 1.50162 1.77987 1.49869 1.07150 1.70715 1.10452 1.23526 0.94080 1.00989 0.83114 1.22656 0.88764 0.96231 0.90965 1.23958 0.78455 1.02408 0.97994 1.22750 1.03823 0.86699 0.86906 1.88146 1.37956 1.65276 1.37181 1.22836 0.87928 0.91987 1.00547 1.20961 0.81193 0.89509 0.81116 1.90762 1.34982 1.79742 1.35219 1.47750 1.36804 1.08556 1.38656 1.22007 1.00128 0.76013 1.02901 1.19473 0.93170 0.96355 0.93459 1.21025 1.20901 0.93684 1.20672 0.92561 1.24961 0.95676 0.98256 0.95104 1.69940 1.24110 1.36112 1.22884 0.86637 0.77945 0.85182 0.78140 1.20126 1.21238 1.20202 0.93632 0.94711 0.90101 0.91559 0.92238 0.91285 0.87321 0.87935 0.89206 0.89071 0.86168 0.89047 0.90814 0.86562 0.89355 0.85383 0.90197 0.91703 0.95925 0.96120 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.82 101.05 1.09 1.47 16 2 O -0.38 -4.62 9.58 -49.64 -0.48 -5.09 16 3 C 0.10 1.06 2.27 -26.73 -0.06 1.00 16 4 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 5 C -0.18 -1.43 9.53 37.16 0.35 -1.08 16 6 C -0.14 -1.44 5.16 -27.88 -0.14 -1.58 16 7 C 0.54 7.43 7.94 -10.98 -0.09 7.34 16 8 O -0.54 -8.98 16.15 -8.85 -0.14 -9.12 16 9 N -0.64 -8.29 3.49 -180.41 -0.63 -8.92 16 10 C 0.11 1.38 7.87 -3.15 -0.02 1.36 16 11 C 0.10 1.34 1.50 -135.67 -0.20 1.14 16 12 C 0.09 1.22 6.80 -3.15 -0.02 1.19 16 13 C 0.08 0.84 6.01 37.12 0.22 1.06 16 14 O -0.37 -4.49 10.84 -35.23 -0.38 -4.87 16 15 C 0.05 0.58 6.94 35.80 0.25 0.83 16 16 C 0.49 8.24 7.64 -11.41 -0.09 8.15 16 17 O -0.53 -11.23 16.45 5.56 0.09 -11.14 16 18 N -0.59 -9.59 2.66 -162.54 -0.43 -10.02 16 19 C 0.11 2.12 4.43 -4.04 -0.02 2.10 16 20 C 0.01 0.31 4.94 -27.88 -0.14 0.17 16 21 C -0.52 -13.91 9.11 -34.44 -0.31 -14.22 16 22 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 25 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.03 0.28 7.87 -51.93 -0.41 -0.13 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.09 1.23 7.23 -51.93 -0.38 0.85 16 39 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 40 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.12 1.16 7.98 -51.93 -0.41 0.75 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.70 7.30 -51.93 -0.38 1.32 16 46 H 0.06 1.15 6.30 -51.93 -0.33 0.82 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.02 0.48 6.05 -51.93 -0.31 0.17 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -33.73 396.49 -7.44 -41.17 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.89 Total: 0.32 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.72 Total: 10.53 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.32 Total: -43.58 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.91 Total: -30.23 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.73 -7.44 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271199403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.438 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds