Wall clock time and date at job start Tue Mar 31 2020 23:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00132 * 2 1 4 4 H 1.08999 * 109.47142 * 29.99610 * 3 2 1 5 5 C 1.53001 * 109.46866 * 269.99912 * 3 2 1 6 6 C 1.52995 * 109.47454 * 149.99904 * 3 2 1 7 7 C 1.50703 * 109.46846 * 295.00035 * 6 3 2 8 8 O 1.21276 * 120.00126 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99534 * 179.97438 * 7 6 3 10 10 C 1.47665 * 134.45641 * 179.97438 * 9 7 6 11 11 C 1.53506 * 85.98374 * 155.70189 * 10 9 7 12 12 C 1.47668 * 134.46205 * 0.02568 * 9 7 6 13 13 C 1.52919 * 113.71147 * 269.13019 * 11 10 9 14 14 O 1.43388 * 108.12511 * 274.08017 * 13 11 10 15 15 C 1.42819 * 113.34442 * 294.21590 * 14 13 11 16 16 C 1.50284 * 110.49421 * 51.31407 * 15 14 13 17 17 O 1.21278 * 118.97047 * 161.59956 * 16 15 14 18 18 N 1.34273 * 122.05539 * 341.57765 * 16 15 14 19 19 C 1.46499 * 119.37694 * 181.99530 * 18 16 15 20 20 C 1.53000 * 109.46840 * 90.00303 * 19 18 16 21 21 C 1.50703 * 109.46912 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99776 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00114 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99955 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46725 * 60.00489 * 25 23 21 27 27 H 1.48505 * 109.46988 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47116 * 300.00464 * 25 23 21 29 29 H 1.09000 * 109.46910 * 300.00311 * 1 2 3 30 30 H 1.09001 * 109.47122 * 60.00225 * 1 2 3 31 31 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46993 * 299.99789 * 5 3 2 33 33 H 1.08997 * 109.47437 * 60.00178 * 5 3 2 34 34 H 1.09000 * 109.47285 * 180.02562 * 5 3 2 35 35 H 1.08996 * 109.47464 * 174.99750 * 6 3 2 36 36 H 1.09000 * 109.46930 * 54.99541 * 6 3 2 37 37 H 1.08997 * 113.79249 * 41.43426 * 10 9 7 38 38 H 1.09001 * 113.79166 * 269.96498 * 10 9 7 39 39 H 1.09000 * 113.79098 * 90.03395 * 12 9 7 40 40 H 1.09001 * 113.79122 * 318.57141 * 12 9 7 41 41 H 1.09000 * 109.91903 * 154.34681 * 13 11 10 42 42 H 1.08994 * 109.62711 * 33.64773 * 13 11 10 43 43 H 1.08998 * 109.27207 * 291.05131 * 15 14 13 44 44 H 1.09006 * 109.26657 * 171.57248 * 15 14 13 45 45 H 1.09002 * 109.47391 * 329.99973 * 19 18 16 46 46 H 1.09001 * 109.46813 * 210.00029 * 19 18 16 47 47 H 1.09001 * 109.47194 * 299.99493 * 20 19 18 48 48 H 1.08992 * 109.47399 * 59.99666 * 20 19 18 49 49 H 0.97000 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1415 0.9236 2.1733 8 8 2.0186 0.7344 2.5903 9 7 4.1952 0.8302 3.0085 10 6 4.3525 0.5268 4.4450 11 6 5.7767 0.0815 4.0846 12 6 5.6550 0.9910 2.8539 13 6 5.8870 -1.4035 3.7364 14 8 6.0645 -2.1356 4.9564 15 6 7.3015 -1.8522 5.6117 16 6 7.4850 -0.3691 5.7706 17 8 8.2873 0.0398 6.5830 18 7 6.7888 0.5173 5.0410 19 6 7.0460 1.9493 5.2127 20 6 8.1429 2.3904 4.2416 21 6 8.4071 3.8636 4.4178 22 1 7.8488 4.4286 5.1496 23 6 9.3623 4.4899 3.6455 24 7 10.0424 3.8019 2.7548 25 14 9.6892 6.3162 3.8635 26 1 10.1276 6.5775 5.2581 27 1 10.7540 6.7443 2.9209 28 1 8.4458 7.0784 3.5844 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8830 1.0773 -1.9563 33 1 1.2569 1.8014 -1.9564 34 1 2.6615 2.7668 -1.4426 35 1 3.8427 2.2369 0.6443 36 1 3.9931 0.5051 0.2618 37 1 3.7139 -0.2838 4.7958 38 1 4.3164 1.4071 5.0869 39 1 6.0056 2.0091 3.0233 40 1 6.0517 0.5494 1.9397 41 1 6.7421 -1.5687 3.0809 42 1 4.9739 -1.7320 3.2401 43 1 8.1230 -2.2549 5.0192 44 1 7.3036 -2.3224 6.5951 45 1 7.3685 2.1404 6.2363 46 1 6.1334 2.5094 5.0088 47 1 9.0555 1.8304 4.4455 48 1 7.8204 2.1994 3.2181 49 1 10.7147 4.2424 2.2117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271199403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:39 Heat of formation + Delta-G solvation = -139.922480 kcal Electronic energy + Delta-G solvation = -31331.823346 eV Core-core repulsion = 27066.960499 eV Total energy + Delta-G solvation = -4264.862847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59513 -40.81515 -39.60510 -38.64591 -38.26775 -36.33248 -34.89620 -33.83326 -32.10928 -31.16076 -29.56700 -28.63662 -27.64246 -27.51716 -27.00753 -25.91120 -23.39189 -22.96950 -22.20242 -20.13514 -19.52492 -19.17579 -18.56089 -18.12813 -17.82346 -17.50184 -17.33036 -16.75531 -16.56384 -16.46390 -16.10276 -15.81749 -15.68201 -15.49720 -15.28930 -14.84636 -14.49996 -14.36254 -14.26829 -14.07587 -13.71229 -13.63175 -13.48240 -13.41755 -13.03169 -12.91022 -12.85523 -12.81437 -12.66933 -12.53706 -12.31894 -12.28300 -11.86902 -11.82429 -11.66241 -11.54055 -11.37042 -10.94615 -10.54204 -10.52532 -10.48266 -9.85060 -9.69443 -8.20314 -6.30549 1.39244 1.42050 1.43710 1.47042 1.51357 1.57378 2.03260 2.42094 2.59396 2.88880 3.13859 3.14271 3.20129 3.35379 3.51967 3.67602 3.83718 4.11006 4.17382 4.22284 4.25681 4.33448 4.41086 4.45890 4.48125 4.50690 4.52589 4.56813 4.60155 4.63703 4.66193 4.67847 4.75951 4.80047 4.84936 4.90033 4.92103 5.03896 5.13811 5.32458 5.48951 5.59852 5.69498 5.84434 6.19796 6.31229 6.34141 6.59060 6.82584 7.01539 7.08921 7.38245 8.90619 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008629 B = 0.003811 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.123078 B = 7344.832351 C = 9907.343358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.399 6.399 3 C 0.097 3.903 4 H 0.055 0.945 5 C -0.168 4.168 6 C -0.134 4.134 7 C 0.541 3.459 8 O -0.571 6.571 9 N -0.639 5.639 10 C 0.105 3.895 11 C 0.101 3.899 12 C 0.100 3.900 13 C 0.078 3.922 14 O -0.367 6.367 15 C 0.058 3.942 16 C 0.476 3.524 17 O -0.582 6.582 18 N -0.586 5.586 19 C 0.128 3.872 20 C 0.027 3.973 21 C -0.544 4.544 22 H 0.058 0.942 23 C 0.012 3.988 24 N -0.924 5.924 25 Si 0.957 3.043 26 H -0.276 1.276 27 H -0.283 1.283 28 H -0.263 1.263 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.055 0.945 46 H 0.081 0.919 47 H -0.022 1.022 48 H 0.024 0.976 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -10.094 -7.566 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.319 6.319 3 C 0.039 3.961 4 H 0.073 0.927 5 C -0.226 4.226 6 C -0.173 4.173 7 C 0.333 3.667 8 O -0.450 6.450 9 N -0.375 5.375 10 C -0.019 4.019 11 C 0.014 3.986 12 C -0.023 4.023 13 C 0.001 3.999 14 O -0.285 6.285 15 C -0.021 4.021 16 C 0.265 3.735 17 O -0.462 6.462 18 N -0.317 5.317 19 C 0.006 3.994 20 C -0.011 4.011 21 C -0.583 4.583 22 H 0.076 0.924 23 C -0.187 4.187 24 N -0.564 5.564 25 Si 0.782 3.218 26 H -0.201 1.201 27 H -0.208 1.208 28 H -0.188 1.188 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.152 0.848 43 H 0.130 0.870 44 H 0.166 0.834 45 H 0.073 0.927 46 H 0.099 0.901 47 H -0.004 1.004 48 H 0.042 0.958 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.078 -10.261 -7.125 19.581 hybrid contribution 0.584 1.731 0.303 1.852 sum -14.494 -8.531 -6.822 18.149 Atomic orbital electron populations 1.22771 0.80270 1.03123 0.99873 1.87834 1.20804 1.28069 1.95147 1.21896 0.93114 0.85021 0.96067 0.92670 1.22245 1.03086 1.02478 0.94771 1.21916 0.99584 1.06123 0.89681 1.20740 0.82334 0.75152 0.88520 1.90671 1.23779 1.51765 1.78800 1.49858 1.07112 1.70253 1.10254 1.23507 0.94118 1.00893 0.83378 1.22955 0.87611 0.97880 0.90185 1.23841 0.78336 1.01139 0.98991 1.22909 1.05496 0.84667 0.86811 1.88165 1.37804 1.64944 1.37566 1.22861 0.88863 0.88157 1.02223 1.21951 0.80012 0.91526 0.79990 1.90735 1.37202 1.80899 1.37386 1.47740 1.37379 1.07259 1.39300 1.21505 0.99263 0.78488 1.00156 1.19266 0.92543 0.94652 0.94607 1.21462 1.21048 0.95211 1.20541 0.92388 1.25780 0.95474 1.02677 0.94806 1.70050 1.24695 1.37879 1.23738 0.85628 0.78255 0.80028 0.77899 1.20136 1.20823 1.18785 0.95047 0.92840 0.89109 0.91207 0.91661 0.90153 0.85770 0.86305 0.88644 0.89923 0.88616 0.86490 0.89045 0.84850 0.87049 0.83441 0.92663 0.90064 1.00367 0.95797 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.82 113.37 1.23 1.90 16 2 O -0.40 -9.26 9.58 -135.20 -1.30 -10.56 16 3 C 0.10 1.91 2.27 30.59 0.07 1.98 16 4 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 5 C -0.17 -2.38 9.53 71.98 0.69 -1.69 16 6 C -0.13 -2.56 5.16 29.85 0.15 -2.40 16 7 C 0.54 14.07 7.94 87.66 0.70 14.77 16 8 O -0.57 -18.86 16.15 10.76 0.17 -18.69 16 9 N -0.64 -15.52 3.49 -843.07 -2.94 -18.46 16 10 C 0.10 2.62 7.87 86.32 0.68 3.30 16 11 C 0.10 2.50 1.50 5.43 0.01 2.51 16 12 C 0.10 2.41 6.80 86.32 0.59 3.00 16 13 C 0.08 1.52 6.01 71.96 0.43 1.95 16 14 O -0.37 -7.94 10.84 -148.98 -1.61 -9.55 16 15 C 0.06 1.32 6.94 71.11 0.49 1.81 16 16 C 0.48 16.10 7.64 87.61 0.67 16.77 16 17 O -0.58 -25.37 16.45 -3.02 -0.05 -25.42 16 18 N -0.59 -19.12 2.66 -786.83 -2.09 -21.21 16 19 C 0.13 5.06 4.43 86.38 0.38 5.44 16 20 C 0.03 1.32 4.94 29.85 0.15 1.47 16 21 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 22 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 23 C 0.01 0.64 5.46 84.66 0.46 1.10 16 24 N -0.92 -53.08 13.29 21.45 0.28 -52.80 16 25 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 28 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 29 H 0.03 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.84 7.87 -2.39 -0.02 0.83 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.30 8.09 -2.39 -0.02 2.28 16 38 H 0.08 2.21 7.23 -2.39 -0.02 2.19 16 39 H 0.10 2.86 5.02 -2.39 -0.01 2.85 16 40 H 0.12 2.24 8.09 -2.39 -0.02 2.22 16 41 H 0.09 1.51 8.13 -2.39 -0.02 1.49 16 42 H 0.13 2.21 7.98 -2.39 -0.02 2.19 16 43 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.15 2.82 8.14 -2.38 -0.02 2.80 16 45 H 0.05 2.46 7.30 -2.39 -0.02 2.44 16 46 H 0.08 2.92 6.30 -2.39 -0.02 2.91 16 47 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 48 H 0.02 1.14 6.05 -2.39 -0.01 1.12 16 49 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -74.72 396.49 2.36 -72.36 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.94 Total: 16.87 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.93 Total: 22.80 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -4.75 Total: -92.47 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -2.79 Total: -64.22 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.72 2.36 -72.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271199403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.564 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds