Wall clock time and date at job start Tue Mar 31 2020 23:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53008 * 109.47438 * 270.00038 * 3 2 1 6 6 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 7 7 C 1.50694 * 109.46840 * 294.99979 * 6 3 2 8 8 O 1.21276 * 120.00379 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99559 * 179.97438 * 7 6 3 10 10 C 1.47178 * 136.00009 * 359.63208 * 9 7 6 11 11 C 1.53130 * 87.73599 * 153.47190 * 10 9 7 12 12 C 1.47182 * 135.99268 * 179.97438 * 9 7 6 13 13 C 1.52447 * 114.50448 * 271.88049 * 11 10 9 14 14 N 1.46286 * 109.56685 * 272.19687 * 13 11 10 15 15 C 1.46506 * 118.72761 * 164.05575 * 14 13 11 16 16 C 1.52995 * 109.46979 * 90.00456 * 15 14 13 17 17 C 1.50707 * 109.46975 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99692 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99762 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99748 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99547 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47427 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47157 * 119.99995 * 21 19 17 24 24 H 1.48508 * 109.46710 * 239.99610 * 21 19 17 25 25 C 1.33712 * 122.54774 * 344.08215 * 14 13 11 26 26 O 1.21284 * 118.36236 * 183.31024 * 25 14 13 27 27 C 1.50163 * 123.28078 * 3.33176 * 25 14 13 28 28 O 1.42557 * 114.16701 * 139.80956 * 11 10 9 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46387 * 59.99775 * 5 3 2 33 33 H 1.08994 * 109.47301 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.46614 * 300.00276 * 5 3 2 35 35 H 1.09000 * 109.46614 * 55.00101 * 6 3 2 36 36 H 1.09002 * 109.47166 * 174.99410 * 6 3 2 37 37 H 1.08998 * 113.49223 * 268.16976 * 10 9 7 38 38 H 1.09003 * 113.48550 * 38.68281 * 10 9 7 39 39 H 1.09000 * 113.49370 * 321.31992 * 12 9 7 40 40 H 1.08999 * 113.49225 * 91.77195 * 12 9 7 41 41 H 1.09002 * 109.45263 * 32.23295 * 13 11 10 42 42 H 1.09002 * 109.45017 * 152.16655 * 13 11 10 43 43 H 1.08996 * 109.46876 * 210.00285 * 15 14 13 44 44 H 1.08998 * 109.46895 * 330.00306 * 15 14 13 45 45 H 1.09004 * 109.46896 * 299.99677 * 16 15 14 46 46 H 1.08994 * 109.47396 * 59.99691 * 16 15 14 47 47 H 0.97004 * 119.99301 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.35018 * 102.47475 * 27 25 14 49 49 H 1.09001 * 109.34415 * 222.16437 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 3.3589 1.2634 0.7213 7 6 3.1416 0.9237 2.1732 8 8 2.0186 0.7345 2.5903 9 7 4.1953 0.8303 3.0084 10 6 5.6552 0.9757 2.8913 11 6 5.6750 1.3589 4.3737 12 6 4.3912 0.5321 4.4363 13 6 5.4777 2.8460 4.6450 14 7 6.7724 3.5261 4.6122 15 6 6.7982 4.9861 4.4936 16 6 6.7822 5.6114 5.8898 17 6 6.8080 7.1134 5.7679 18 1 6.8337 7.5755 4.7921 19 6 6.7988 7.8973 6.9021 20 7 6.7670 7.3345 8.0902 21 14 6.8316 9.7589 6.7508 22 1 6.8658 10.1385 5.3156 23 1 5.6157 10.3285 7.3851 24 1 8.0399 10.2896 7.4318 25 6 7.9334 2.8667 4.6856 26 8 8.9609 3.5105 4.7129 27 6 8.0286 1.3690 4.7355 28 8 6.7664 0.8055 5.1051 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2567 1.8015 -1.9563 33 1 2.6613 2.7671 -1.4425 34 1 2.8829 1.0776 -1.9563 35 1 3.9931 0.5053 0.2617 36 1 3.8427 2.2371 0.6442 37 1 6.1694 0.0386 2.6778 38 1 5.9593 1.7851 2.2276 39 1 3.6260 0.9663 5.0798 40 1 4.5633 -0.5248 4.6399 41 1 4.8249 3.2707 3.8823 42 1 5.0227 2.9786 5.6266 43 1 7.7031 5.2921 3.9688 44 1 5.9237 5.3207 3.9355 45 1 5.8771 5.3054 6.4146 46 1 7.6565 5.2768 6.4479 47 1 6.7602 7.8861 8.8881 48 1 8.3192 0.9927 3.7546 49 1 8.7798 1.0792 5.4703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271199468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:34 Heat of formation + Delta-G solvation = -137.209756 kcal Electronic energy + Delta-G solvation = -30629.193496 eV Core-core repulsion = 26364.448282 eV Total energy + Delta-G solvation = -4264.745215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56271 -40.96133 -39.85286 -38.63567 -37.46003 -36.96977 -35.12837 -33.86940 -32.20104 -31.36424 -29.34712 -28.67686 -27.68852 -27.41586 -26.85523 -26.34171 -23.74513 -22.71968 -21.95953 -20.35725 -19.28380 -19.06532 -18.74171 -18.17408 -17.83102 -17.44042 -17.30266 -16.88526 -16.81035 -16.45546 -16.05051 -15.91362 -15.62066 -15.36578 -15.22113 -14.79633 -14.59889 -14.44583 -14.25440 -14.15411 -14.03241 -13.74474 -13.45230 -13.37700 -13.17757 -12.97763 -12.90854 -12.88181 -12.74047 -12.52432 -12.32989 -12.15608 -11.90956 -11.83922 -11.68272 -11.47702 -11.30680 -10.92001 -10.61785 -10.55143 -10.50216 -9.85547 -9.73446 -8.24663 -6.37222 1.38002 1.39529 1.46540 1.51749 1.53462 1.57939 1.88956 2.39095 2.45924 2.87276 3.02802 3.09260 3.15443 3.33119 3.58400 3.79776 3.86145 4.13748 4.16242 4.23241 4.27698 4.29266 4.36930 4.44107 4.46803 4.48953 4.53387 4.55427 4.58303 4.61245 4.63422 4.67552 4.71758 4.75175 4.83576 4.90566 4.91356 5.03518 5.12756 5.31753 5.42141 5.54353 5.69535 5.79438 6.13953 6.29099 6.40547 6.58146 6.78823 7.05693 7.07189 7.32662 8.87913 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.002707 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.517904 B =10339.255788 C =11764.444681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.093 3.907 4 H 0.054 0.946 5 C -0.168 4.168 6 C -0.129 4.129 7 C 0.546 3.454 8 O -0.571 6.571 9 N -0.646 5.646 10 C 0.091 3.909 11 C 0.058 3.942 12 C 0.128 3.872 13 C 0.116 3.884 14 N -0.599 5.599 15 C 0.130 3.870 16 C 0.024 3.976 17 C -0.541 4.541 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.276 1.276 24 H -0.281 1.281 25 C 0.470 3.530 26 O -0.588 6.588 27 C 0.063 3.937 28 O -0.348 6.348 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.088 0.912 45 H -0.006 1.006 46 H -0.025 1.025 47 H 0.264 0.736 48 H 0.131 0.869 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -18.048 -19.109 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.320 6.320 3 C 0.035 3.965 4 H 0.073 0.927 5 C -0.226 4.226 6 C -0.168 4.168 7 C 0.338 3.662 8 O -0.450 6.450 9 N -0.383 5.383 10 C -0.032 4.032 11 C 0.017 3.983 12 C 0.005 3.995 13 C -0.006 4.006 14 N -0.331 5.331 15 C 0.008 3.992 16 C -0.014 4.014 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.207 1.207 25 C 0.259 3.741 26 O -0.469 6.469 27 C -0.015 4.015 28 O -0.265 6.265 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.012 0.988 46 H -0.006 1.006 47 H 0.072 0.928 48 H 0.148 0.852 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.585 -18.094 -18.725 27.121 hybrid contribution -0.153 1.487 0.784 1.688 sum -7.738 -16.607 -17.940 25.642 Atomic orbital electron populations 1.22766 0.80299 1.03081 0.99900 1.87827 1.20768 1.28270 1.95168 1.21957 0.93415 0.84940 0.96220 0.92736 1.22244 1.03038 1.02583 0.94689 1.21893 0.99354 1.06426 0.89151 1.20683 0.82149 0.75331 0.88073 1.90704 1.24113 1.51900 1.78284 1.49364 1.07379 1.70458 1.11130 1.23804 0.79831 1.04408 0.95146 1.22863 0.89723 0.91861 0.93890 1.22861 0.92720 1.01280 0.82672 1.21691 0.84898 0.90522 1.03534 1.47723 1.06292 1.07944 1.71104 1.21502 1.02011 0.77551 0.98124 1.19165 0.94278 0.95105 0.92817 1.21581 1.50820 0.92283 0.93269 0.91423 1.26042 0.94498 1.04594 0.94867 1.70129 1.51429 1.37494 0.98395 0.85320 0.77722 0.78567 0.78960 1.18028 1.20106 1.20732 1.21745 0.83051 0.93237 0.76080 1.90753 1.35092 1.69328 1.51760 1.22907 0.87131 0.85019 1.06470 1.88107 1.14078 1.61457 1.62847 0.92835 0.95060 0.89201 0.91999 0.89875 0.91101 0.86226 0.85061 0.85400 0.88039 0.89788 0.86330 0.88010 0.91523 0.91847 0.89338 0.98808 1.00617 0.92753 0.85152 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 113.37 1.23 1.83 16 2 O -0.40 -8.31 9.58 -135.21 -1.30 -9.60 16 3 C 0.09 1.51 2.27 30.60 0.07 1.58 16 4 H 0.05 1.03 7.60 -2.39 -0.02 1.01 16 5 C -0.17 -1.80 9.53 71.98 0.69 -1.12 16 6 C -0.13 -1.76 5.24 29.85 0.16 -1.61 16 7 C 0.55 11.45 7.96 87.65 0.70 12.14 16 8 O -0.57 -16.96 16.19 10.76 0.17 -16.79 16 9 N -0.65 -11.10 3.52 -858.95 -3.03 -14.12 16 10 C 0.09 1.11 7.28 83.41 0.61 1.71 16 11 C 0.06 1.07 1.29 -10.99 -0.01 1.06 16 12 C 0.13 2.22 8.04 83.31 0.67 2.89 16 13 C 0.12 2.97 5.86 86.24 0.51 3.47 16 14 N -0.60 -20.01 2.84 -825.70 -2.34 -22.35 16 15 C 0.13 5.36 5.20 86.38 0.45 5.81 16 16 C 0.02 1.32 5.29 29.85 0.16 1.48 16 17 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 21 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.47 15.63 7.57 87.65 0.66 16.29 16 26 O -0.59 -25.64 16.33 -3.04 -0.05 -25.69 16 27 C 0.06 1.31 6.70 71.07 0.48 1.78 16 28 O -0.35 -7.04 10.68 -148.98 -1.59 -8.63 16 29 H 0.05 0.69 7.87 -2.39 -0.02 0.67 16 30 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 0.65 7.87 -2.39 -0.02 0.64 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 39 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 2.29 7.84 -2.39 -0.02 2.27 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 2.79 7.29 -2.39 -0.02 2.77 16 44 H 0.09 3.19 7.97 -2.39 -0.02 3.17 16 45 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 46 H -0.02 -1.56 8.14 -2.39 -0.02 -1.58 16 47 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.13 1.65 7.99 -2.39 -0.02 1.63 16 49 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -84.02 405.26 2.15 -81.87 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.93 Total: 9.85 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.05 Total: 16.82 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -5.08 Total: -94.52 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -2.76 Total: -60.71 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -84.02 2.15 -81.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271199468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.342 kcal (2) G-P(sol) polarization free energy of solvation -84.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds