Wall clock time and date at job start Tue Mar 31 2020 23:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46646 * 2 1 4 4 C 1.50699 * 109.47235 * 119.99212 * 2 1 3 5 5 O 1.21280 * 120.00095 * 16.55963 * 4 2 1 6 6 N 1.34769 * 120.00180 * 196.55228 * 4 2 1 7 7 C 1.46505 * 120.00332 * 185.44397 * 6 4 2 8 8 C 1.52992 * 109.47147 * 276.07252 * 7 6 4 9 9 N 1.46502 * 109.47444 * 184.41343 * 8 7 6 10 10 C 1.36931 * 120.00095 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00555 * 0.02562 * 10 9 8 12 12 C 1.38816 * 119.99900 * 179.97438 * 10 9 8 13 13 N 1.31617 * 119.99918 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00035 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47357 * 60.00365 * 14 12 10 16 16 H 1.48501 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47237 * 300.00081 * 14 12 10 18 18 C 1.46506 * 120.00310 * 5.44203 * 6 4 2 19 19 C 1.50703 * 109.46764 * 95.37137 * 18 6 4 20 20 C 1.38228 * 120.00010 * 88.16961 * 19 18 6 21 21 C 1.38234 * 120.00102 * 179.97438 * 20 19 18 22 22 C 1.38233 * 119.99999 * 0.10071 * 21 20 19 23 23 C 1.38231 * 120.00042 * 359.85148 * 22 21 20 24 24 C 1.38233 * 119.99868 * 268.14416 * 19 18 6 25 25 C 1.52999 * 109.47219 * 239.99674 * 2 1 3 26 26 C 1.52999 * 109.47058 * 62.04759 * 25 2 1 27 27 F 1.39900 * 109.47161 * 182.04318 * 25 2 1 28 28 F 1.39890 * 109.47026 * 302.04623 * 25 2 1 29 29 H 1.08997 * 109.47446 * 299.99972 * 1 2 3 30 30 H 1.09000 * 109.47465 * 60.00569 * 1 2 3 31 31 H 1.09004 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46607 * 36.07079 * 7 6 4 33 33 H 1.09001 * 109.47366 * 156.06859 * 7 6 4 34 34 H 1.09003 * 109.47300 * 304.41338 * 8 7 6 35 35 H 1.09006 * 109.47294 * 64.41034 * 8 7 6 36 36 H 0.96997 * 119.99613 * 359.97438 * 9 8 7 37 37 H 0.96999 * 120.00148 * 179.97438 * 13 12 10 38 38 H 1.08997 * 109.46496 * 335.37656 * 18 6 4 39 39 H 1.08999 * 109.47364 * 215.37437 * 18 6 4 40 40 H 1.08006 * 119.99708 * 359.69889 * 20 19 18 41 41 H 1.08004 * 119.99912 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.99609 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.00012 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.00312 * 0.02562 * 24 19 18 45 45 H 1.09000 * 109.47438 * 59.99460 * 26 25 2 46 46 H 1.08992 * 109.47042 * 180.02562 * 26 25 2 47 47 H 1.09001 * 109.46801 * 300.00105 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 8 1.2853 -1.4231 1.8667 6 7 3.3118 -0.5534 1.6240 7 6 3.8334 -1.3346 2.7483 8 6 3.4734 -0.6396 4.0628 9 7 4.0841 -1.3628 5.1809 10 6 3.8991 -0.9221 6.4641 11 1 3.3027 -0.0416 6.6521 12 6 4.4774 -1.6078 7.5236 13 7 5.2038 -2.6812 7.2947 14 14 4.2245 -1.0070 9.2742 15 1 2.7744 -1.0098 9.5939 16 1 4.9409 -1.9060 10.2144 17 1 4.7578 0.3726 9.4060 18 6 4.1810 0.3982 0.9275 19 6 4.1791 1.7127 1.6646 20 6 5.0836 1.9334 2.6863 21 6 5.0822 3.1394 3.3620 22 6 4.1750 4.1237 3.0174 23 6 3.2711 3.9033 1.9950 24 6 3.2733 2.6978 1.3185 25 6 2.0400 -0.7213 -1.2492 26 6 1.5725 0.0290 -2.4979 27 9 3.4382 -0.7622 -1.2259 28 9 1.5357 -2.0259 -1.2729 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.3941 -2.3320 2.7325 33 1 4.9173 -1.4136 2.6640 34 1 3.8457 0.3848 4.0461 35 1 2.3902 -0.6305 4.1843 36 1 4.6194 -2.1539 5.0122 37 1 5.6082 -3.1601 8.0350 38 1 3.8136 0.5502 -0.0874 39 1 5.1964 0.0035 0.8911 40 1 5.7884 1.1620 2.9596 41 1 5.7886 3.3117 4.1606 42 1 4.1737 5.0657 3.5457 43 1 2.5626 4.6726 1.7255 44 1 2.5666 2.5253 0.5202 45 1 1.9654 1.0456 -2.4794 46 1 1.9355 -0.4851 -3.3878 47 1 0.4831 0.0609 -2.5160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271819374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:10 Heat of formation + Delta-G solvation = -88.045864 kcal Electronic energy + Delta-G solvation = -31368.491720 eV Core-core repulsion = 26994.790896 eV Total energy + Delta-G solvation = -4373.700824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.39101 -47.33434 -40.28004 -38.91222 -36.08538 -34.99672 -34.31648 -31.87213 -31.03335 -30.81289 -30.08044 -28.08003 -26.33081 -25.35598 -23.70197 -22.61099 -22.13837 -21.58266 -21.09153 -19.08144 -17.95203 -17.92067 -17.24511 -17.12663 -16.58565 -16.22709 -15.65319 -15.36027 -14.97421 -14.66248 -14.42127 -14.23757 -14.13655 -13.77144 -13.51278 -13.39918 -13.31900 -13.14514 -13.13037 -13.04545 -12.95085 -12.81757 -12.45400 -12.41059 -12.23701 -11.88696 -11.72113 -11.51801 -11.21263 -11.00855 -10.93046 -10.81330 -10.73793 -10.59506 -10.10524 -9.78740 -9.61300 -8.92146 -8.84710 -8.69995 -8.47663 -6.85548 -5.70756 -2.98996 1.30076 1.44691 2.47977 2.99336 3.42901 3.47732 3.51845 3.53339 3.70215 3.84618 3.94945 4.08166 4.50597 4.57463 4.64850 4.69148 4.77700 4.85241 5.01087 5.04654 5.11243 5.22036 5.25018 5.27940 5.43447 5.48044 5.56082 5.56736 5.59361 5.65764 5.69453 5.88189 5.98272 6.00605 6.04769 6.10730 6.15999 6.44952 6.53006 6.59116 6.65648 6.86651 7.00856 7.02419 7.47290 7.75357 8.21331 8.48056 9.58712 10.15771 10.51199 11.52256 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.003785 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.026150 B = 7394.916774 C = 8852.691246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.160 4.160 3 H 0.120 0.880 4 C 0.515 3.485 5 O -0.513 6.513 6 N -0.593 5.593 7 C 0.110 3.890 8 C 0.140 3.860 9 N -0.730 5.730 10 C -0.233 4.233 11 H 0.068 0.932 12 C -0.014 4.014 13 N -0.935 5.935 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.287 1.287 18 C 0.127 3.873 19 C -0.109 4.109 20 C -0.088 4.088 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.115 4.115 25 C 0.296 3.704 26 C -0.195 4.195 27 F -0.190 7.190 28 F -0.189 7.189 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.022 0.978 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 12.695 -23.397 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 H 0.138 0.862 4 C 0.301 3.699 5 O -0.388 6.388 6 N -0.325 5.325 7 C -0.012 4.012 8 C 0.011 3.989 9 N -0.374 5.374 10 C -0.364 4.364 11 H 0.086 0.914 12 C -0.210 4.210 13 N -0.584 5.584 14 Si 0.738 3.262 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.004 3.996 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.133 4.133 25 C 0.260 3.740 26 C -0.253 4.253 27 F -0.170 7.170 28 F -0.170 7.170 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.803 12.318 -22.905 26.447 hybrid contribution 0.278 0.030 1.181 1.214 sum -4.525 12.348 -21.724 25.395 Atomic orbital electron populations 1.21702 0.90057 1.04633 1.03075 1.22594 1.00947 1.02036 0.92664 0.86184 1.20042 0.82019 0.82190 0.85656 1.90755 1.54536 1.38298 1.55184 1.47852 1.10718 1.40631 1.33334 1.21747 0.98779 0.95281 0.85361 1.21019 0.96653 0.94996 0.86194 1.42202 1.61148 1.32652 1.01439 1.19138 1.25805 1.08169 0.83332 0.91432 1.24711 1.00611 0.97833 0.97810 1.69647 1.38175 1.19889 1.30648 0.86272 0.77558 0.77640 0.84771 1.21295 1.21670 1.21337 1.21112 0.96445 0.85887 0.96119 1.20279 0.96821 0.95810 0.98069 1.21132 0.98310 0.96939 0.94240 1.21214 0.99007 0.93637 0.99328 1.21154 0.95775 0.99286 0.97347 1.21044 0.99181 0.97210 0.96776 1.20942 0.98329 0.93823 1.00230 1.20947 0.75114 0.80670 0.97299 1.22848 1.04728 1.01956 0.95746 1.92920 1.30734 1.96102 1.97284 1.93063 1.86862 1.39581 1.97527 0.90574 0.91193 0.90355 0.90237 0.90317 0.95450 0.95995 0.78404 0.93517 0.87563 0.89271 0.85623 0.85862 0.86288 0.86313 0.86813 0.88959 0.89526 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.17 37.16 0.30 -0.99 16 2 C -0.16 -1.68 1.75 -91.77 -0.16 -1.84 16 3 H 0.12 0.98 4.41 -51.93 -0.23 0.75 16 4 C 0.52 8.07 6.45 -10.99 -0.07 8.00 16 5 O -0.51 -10.27 15.61 5.56 0.09 -10.18 16 6 N -0.59 -8.98 2.40 -175.06 -0.42 -9.40 16 7 C 0.11 2.02 5.46 -4.04 -0.02 1.99 16 8 C 0.14 3.10 6.54 -4.04 -0.03 3.07 16 9 N -0.73 -19.46 5.60 -59.91 -0.34 -19.80 16 10 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 11 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 12 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 13 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 14 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 C 0.13 1.49 4.41 -5.19 -0.02 1.47 16 19 C -0.11 -1.33 5.25 -104.63 -0.55 -1.88 16 20 C -0.09 -1.19 7.70 -39.59 -0.30 -1.50 16 21 C -0.11 -1.48 10.05 -39.58 -0.40 -1.88 16 22 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.11 -1.24 9.43 -39.58 -0.37 -1.61 16 25 C 0.30 2.87 1.72 -26.73 -0.05 2.82 16 26 C -0.20 -1.04 9.08 37.16 0.34 -0.70 16 27 F -0.19 -2.00 13.13 2.25 0.03 -1.97 16 28 F -0.19 -2.41 16.22 2.25 0.04 -2.37 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.40 6.48 -51.93 -0.34 0.07 16 31 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 32 H 0.08 1.59 7.70 -51.93 -0.40 1.19 16 33 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 34 H 0.03 0.60 5.72 -51.93 -0.30 0.30 16 35 H 0.02 0.55 8.00 -51.93 -0.42 0.13 16 36 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.11 1.02 3.71 -51.93 -0.19 0.83 16 39 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 40 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.11 0.93 5.75 -52.48 -0.30 0.62 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.39 6.48 -51.93 -0.34 0.06 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -35.71 380.52 -8.08 -43.79 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.54 Total: 8.33 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.37 Total: -3.98 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.03 Total: -57.42 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.71 -8.08 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271819374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.255 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds