Wall clock time and date at job start Tue Mar 31 2020 23:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34222 * 117.00110 * 2 1 4 4 O 1.20829 * 120.00030 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00276 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47301 * 59.99483 * 5 3 2 7 7 C 1.53005 * 109.46938 * 299.99860 * 5 3 2 8 8 C 1.53002 * 109.47407 * 179.97438 * 5 3 2 9 9 N 1.46896 * 109.46849 * 184.99695 * 8 5 3 10 10 C 1.48066 * 110.99794 * 190.00042 * 9 8 5 11 11 C 1.53388 * 86.02883 * 222.76840 * 10 9 8 12 12 C 1.48064 * 110.99861 * 90.55427 * 9 8 5 13 13 C 1.52558 * 113.84204 * 138.14067 * 11 10 9 14 14 N 1.46267 * 109.56569 * 176.52252 * 13 11 10 15 15 C 1.46506 * 118.71236 * 163.90057 * 14 13 11 16 16 C 1.53000 * 109.46992 * 90.00143 * 15 14 13 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47494 * 119.99367 * 21 19 17 24 24 H 1.48502 * 109.46977 * 240.00094 * 21 19 17 25 25 C 1.33713 * 122.57214 * 344.18486 * 14 13 11 26 26 O 1.21286 * 118.38533 * 182.95647 * 25 14 13 27 27 C 1.50145 * 123.25143 * 2.72120 * 25 14 13 28 28 O 1.42681 * 113.79317 * 268.80527 * 11 10 9 29 29 H 1.09004 * 109.46629 * 300.00184 * 1 2 3 30 30 H 1.08991 * 109.47133 * 59.99877 * 1 2 3 31 31 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46763 * 179.97438 * 7 5 3 33 33 H 1.08997 * 109.46817 * 299.99920 * 7 5 3 34 34 H 1.08999 * 109.46731 * 60.00123 * 7 5 3 35 35 H 1.09000 * 109.46575 * 65.00152 * 8 5 3 36 36 H 1.08998 * 109.47027 * 304.99941 * 8 5 3 37 37 H 1.08999 * 113.78278 * 108.49091 * 10 9 8 38 38 H 1.09004 * 113.78202 * 337.04472 * 10 9 8 39 39 H 1.08998 * 113.78441 * 22.95113 * 12 9 8 40 40 H 1.09001 * 113.78398 * 251.50398 * 12 9 8 41 41 H 1.09003 * 109.45054 * 56.49046 * 13 11 10 42 42 H 1.09000 * 109.44067 * 296.54336 * 13 11 10 43 43 H 1.09000 * 109.46803 * 209.99577 * 15 14 13 44 44 H 1.09000 * 109.47214 * 330.00370 * 15 14 13 45 45 H 1.09000 * 109.47214 * 300.00285 * 16 15 14 46 46 H 1.09008 * 109.47142 * 59.99450 * 16 15 14 47 47 H 0.97000 * 119.99667 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.48336 * 222.46321 * 27 25 14 49 49 H 1.08998 * 109.04635 * 102.86453 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5810 1.2484 8 6 4.0002 2.7420 -0.0011 9 7 5.4621 2.8203 -0.1223 10 6 5.9407 4.2017 0.1123 11 6 6.8693 3.9696 -1.0863 12 6 5.8734 2.8957 -1.5427 13 6 6.9651 5.1625 -2.0324 14 7 7.9326 4.8724 -3.0902 15 6 7.9298 5.7064 -4.2947 16 6 8.8742 6.8935 -4.0953 17 6 8.8718 7.7510 -5.3344 18 1 8.2577 7.4770 -6.1795 19 6 9.6535 8.8854 -5.3893 20 7 10.4009 9.2194 -4.3599 21 14 9.6501 9.9489 -6.9250 22 1 8.7314 9.3603 -7.9326 23 1 9.1927 11.3183 -6.5779 24 1 11.0236 10.0129 -7.4859 25 6 8.8159 3.8723 -3.0033 26 8 9.6198 3.7334 -3.9009 27 6 8.8654 2.9157 -1.8472 28 8 8.1503 3.4516 -0.7302 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.2025 0.6377 1.2477 33 1 3.7245 1.0750 2.1385 34 1 3.8048 -0.4642 1.2482 35 1 3.6871 3.2138 0.9303 36 1 3.5377 3.2574 -0.8429 37 1 6.4673 4.3298 1.0580 38 1 5.1821 4.9651 -0.0608 39 1 5.0949 3.2718 -2.2064 40 1 6.3466 1.9859 -1.9122 41 1 7.2884 6.0422 -1.4757 42 1 5.9879 5.3528 -2.4763 43 1 8.2646 5.1150 -5.1469 44 1 6.9202 6.0727 -4.4807 45 1 8.5395 7.4849 -3.2430 46 1 9.8839 6.5273 -3.9092 47 1 10.9506 10.0177 -4.3984 48 1 9.9032 2.7430 -1.5623 49 1 8.4113 1.9713 -2.1472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273415560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:06 Heat of formation + Delta-G solvation = -119.251057 kcal Electronic energy + Delta-G solvation = -30319.750313 eV Core-core repulsion = 26055.783846 eV Total energy + Delta-G solvation = -4263.966467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51442 -40.87363 -39.31587 -37.21822 -36.66946 -35.47774 -34.55497 -33.05490 -30.53045 -29.74430 -28.23136 -27.64464 -26.82207 -26.51510 -24.83072 -24.54576 -22.75234 -21.55732 -20.43397 -20.16461 -18.50664 -17.97253 -17.49694 -17.19058 -16.82097 -16.77892 -16.16952 -16.01075 -15.64098 -15.47156 -14.91073 -14.64058 -14.40728 -14.36751 -14.12154 -13.76008 -13.41376 -13.37172 -13.03776 -12.91964 -12.80660 -12.74951 -12.42712 -12.37169 -12.21087 -12.13703 -11.53334 -11.48636 -11.33291 -11.32062 -11.20577 -11.02655 -10.91870 -10.71255 -10.64340 -10.23712 -9.91674 -9.84827 -9.35026 -9.20748 -8.95576 -8.36620 -8.13486 -6.01395 -4.04659 1.79401 2.23345 2.86849 3.11370 3.30861 3.34241 3.38618 3.42537 3.55596 4.10182 4.20466 4.22168 4.36488 4.45445 4.53558 4.66902 4.68514 4.75019 4.85924 4.91122 4.95075 5.07722 5.08270 5.10134 5.18575 5.30360 5.34726 5.37817 5.43781 5.47050 5.50222 5.50904 5.57815 5.75185 5.86412 5.90748 6.01827 6.04086 6.47061 6.53705 6.66729 6.82247 6.87839 7.31928 7.57892 7.70100 7.90580 7.98702 8.33899 8.49321 9.02043 9.59166 11.10041 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002186 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.895310 B =12805.193109 C =13578.138352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.465 3.535 4 O -0.508 6.508 5 C -0.074 4.074 6 H 0.109 0.891 7 C -0.136 4.136 8 C 0.032 3.968 9 N -0.465 5.465 10 C 0.029 3.971 11 C 0.073 3.927 12 C -0.023 4.023 13 C 0.099 3.901 14 N -0.596 5.596 15 C 0.113 3.887 16 C 0.014 3.986 17 C -0.520 4.520 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.479 3.521 26 O -0.538 6.538 27 C 0.052 3.948 28 O -0.334 6.334 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.260 0.740 48 H 0.130 0.870 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -19.284 13.406 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.093 4.093 6 H 0.127 0.873 7 C -0.193 4.193 8 C -0.097 4.097 9 N -0.188 5.188 10 C -0.100 4.100 11 C 0.032 3.968 12 C -0.151 4.151 13 C -0.025 4.025 14 N -0.329 5.329 15 C -0.007 4.007 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.265 3.735 26 O -0.416 6.416 27 C -0.027 4.027 28 O -0.252 6.252 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.033 0.967 46 H 0.041 0.959 47 H 0.070 0.930 48 H 0.148 0.852 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.288 -19.479 13.615 29.388 hybrid contribution -0.749 1.420 -1.533 2.220 sum -18.037 -18.058 12.082 28.239 Atomic orbital electron populations 1.23288 0.76245 1.03784 1.02626 1.86509 1.23475 1.33434 1.83969 1.23888 0.92139 0.81315 0.71914 1.90682 1.67324 1.36346 1.45189 1.20893 0.86258 0.98913 1.03259 0.87274 1.21692 1.03308 0.99805 0.94540 1.22558 0.89649 0.94112 1.03377 1.68489 1.11123 1.24212 1.14943 1.23958 0.95708 0.90926 0.99376 1.22875 0.85032 0.93063 0.95826 1.24717 0.98422 1.00519 0.91489 1.21976 0.93854 0.97728 0.88940 1.47677 1.33884 1.31308 1.20042 1.21961 1.00779 0.93038 0.84919 1.19352 0.94799 0.90983 0.97230 1.21116 1.26011 1.08182 1.00593 0.92504 1.25010 0.95303 0.97724 0.96336 1.69988 1.27604 1.25592 1.29928 0.86499 0.77895 0.80170 0.83196 1.19702 1.21018 1.20956 1.20685 0.81427 0.82398 0.88957 1.90767 1.38043 1.72762 1.40018 1.22793 0.99577 0.95474 0.84849 1.88107 1.27344 1.78731 1.31020 0.91852 0.91838 0.88001 0.89432 0.92479 0.91791 0.89603 0.92390 0.87353 0.89073 0.89715 0.88508 0.89992 0.89778 0.90628 0.91838 0.96674 0.95882 0.93007 0.85238 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.90 10.47 -39.24 -0.41 -3.31 16 3 C 0.47 4.22 7.26 36.01 0.26 4.48 16 4 O -0.51 -5.94 15.67 -18.75 -0.29 -6.23 16 5 C -0.07 -0.54 3.02 -91.77 -0.28 -0.82 16 6 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.14 -0.88 9.01 37.16 0.33 -0.55 16 8 C 0.03 0.25 3.53 -3.83 -0.01 0.24 16 9 N -0.47 -3.98 5.62 -240.90 -1.35 -5.34 16 10 C 0.03 0.25 7.36 -2.99 -0.02 0.23 16 11 C 0.07 0.81 1.16 -90.51 -0.10 0.70 16 12 C -0.02 -0.21 7.07 -2.98 -0.02 -0.23 16 13 C 0.10 1.32 5.88 -4.39 -0.03 1.29 16 14 N -0.60 -10.51 2.83 -174.68 -0.50 -11.01 16 15 C 0.11 2.39 5.21 -4.04 -0.02 2.37 16 16 C 0.01 0.38 5.29 -27.89 -0.15 0.23 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 21 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.48 8.64 7.57 -11.73 -0.09 8.55 16 26 O -0.54 -12.09 16.33 5.55 0.09 -12.00 16 27 C 0.05 0.69 6.65 35.74 0.24 0.93 16 28 O -0.33 -4.33 10.66 -35.23 -0.38 -4.71 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.61 7.75 -51.92 -0.40 0.21 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 8.11 -51.93 -0.42 -0.05 16 35 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.06 0.49 7.19 -51.93 -0.37 0.12 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.65 7.88 -51.93 -0.41 0.25 16 39 H 0.08 0.71 7.25 -51.93 -0.38 0.34 16 40 H 0.10 0.88 7.01 -51.93 -0.36 0.51 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 43 H 0.08 1.70 7.28 -51.93 -0.38 1.32 16 44 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.69 8.14 -51.92 -0.42 0.26 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 49 H 0.08 0.91 7.15 -51.93 -0.37 0.54 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -35.92 400.74 -8.41 -44.34 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -8.10 Total: -3.21 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.77 Total: 5.09 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -1.11 Total: -42.84 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.99 Total: -26.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.92 -8.41 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.912 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds