Wall clock time and date at job start Tue Mar 31 2020 23:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34222 * 117.00110 * 2 1 4 4 O 1.20829 * 120.00030 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00276 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47301 * 59.99483 * 5 3 2 7 7 C 1.53005 * 109.46938 * 299.99860 * 5 3 2 8 8 C 1.53002 * 109.47407 * 179.97438 * 5 3 2 9 9 N 1.46896 * 109.46849 * 184.99695 * 8 5 3 10 10 C 1.48066 * 110.99794 * 190.00042 * 9 8 5 11 11 C 1.53388 * 86.02883 * 222.76840 * 10 9 8 12 12 C 1.48064 * 110.99861 * 90.55427 * 9 8 5 13 13 C 1.52558 * 113.84204 * 138.14067 * 11 10 9 14 14 N 1.46267 * 109.56569 * 176.52252 * 13 11 10 15 15 C 1.46506 * 118.71236 * 163.90057 * 14 13 11 16 16 C 1.53000 * 109.46992 * 90.00143 * 15 14 13 17 17 C 1.50696 * 109.47110 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00016 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00069 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47494 * 119.99367 * 21 19 17 24 24 H 1.48502 * 109.46977 * 240.00094 * 21 19 17 25 25 C 1.33713 * 122.57214 * 344.18486 * 14 13 11 26 26 O 1.21286 * 118.38533 * 182.95647 * 25 14 13 27 27 C 1.50145 * 123.25143 * 2.72120 * 25 14 13 28 28 O 1.42681 * 113.79317 * 268.80527 * 11 10 9 29 29 H 1.09004 * 109.46629 * 300.00184 * 1 2 3 30 30 H 1.08991 * 109.47133 * 59.99877 * 1 2 3 31 31 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46763 * 179.97438 * 7 5 3 33 33 H 1.08997 * 109.46817 * 299.99920 * 7 5 3 34 34 H 1.08999 * 109.46731 * 60.00123 * 7 5 3 35 35 H 1.09000 * 109.46575 * 65.00152 * 8 5 3 36 36 H 1.08998 * 109.47027 * 304.99941 * 8 5 3 37 37 H 1.08999 * 113.78278 * 108.49091 * 10 9 8 38 38 H 1.09004 * 113.78202 * 337.04472 * 10 9 8 39 39 H 1.08998 * 113.78441 * 22.95113 * 12 9 8 40 40 H 1.09001 * 113.78398 * 251.50398 * 12 9 8 41 41 H 1.09003 * 109.45054 * 56.49046 * 13 11 10 42 42 H 1.09000 * 109.44067 * 296.54336 * 13 11 10 43 43 H 1.09000 * 109.46803 * 209.99577 * 15 14 13 44 44 H 1.09000 * 109.47214 * 330.00370 * 15 14 13 45 45 H 1.09000 * 109.47214 * 300.00285 * 16 15 14 46 46 H 1.09008 * 109.47142 * 59.99450 * 16 15 14 47 47 H 0.97000 * 119.99667 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.48336 * 222.46321 * 27 25 14 49 49 H 1.08998 * 109.04635 * 102.86453 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5810 1.2484 8 6 4.0002 2.7420 -0.0011 9 7 5.4621 2.8203 -0.1223 10 6 5.9407 4.2017 0.1123 11 6 6.8693 3.9696 -1.0863 12 6 5.8734 2.8957 -1.5427 13 6 6.9651 5.1625 -2.0324 14 7 7.9326 4.8724 -3.0902 15 6 7.9298 5.7064 -4.2947 16 6 8.8742 6.8935 -4.0953 17 6 8.8718 7.7510 -5.3344 18 1 8.2577 7.4770 -6.1795 19 6 9.6535 8.8854 -5.3893 20 7 10.4009 9.2194 -4.3599 21 14 9.6501 9.9489 -6.9250 22 1 8.7314 9.3603 -7.9326 23 1 9.1927 11.3183 -6.5779 24 1 11.0236 10.0129 -7.4859 25 6 8.8159 3.8723 -3.0033 26 8 9.6198 3.7334 -3.9009 27 6 8.8654 2.9157 -1.8472 28 8 8.1503 3.4516 -0.7302 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 5.2025 0.6377 1.2477 33 1 3.7245 1.0750 2.1385 34 1 3.8048 -0.4642 1.2482 35 1 3.6871 3.2138 0.9303 36 1 3.5377 3.2574 -0.8429 37 1 6.4673 4.3298 1.0580 38 1 5.1821 4.9651 -0.0608 39 1 5.0949 3.2718 -2.2064 40 1 6.3466 1.9859 -1.9122 41 1 7.2884 6.0422 -1.4757 42 1 5.9879 5.3528 -2.4763 43 1 8.2646 5.1150 -5.1469 44 1 6.9202 6.0727 -4.4807 45 1 8.5395 7.4849 -3.2430 46 1 9.8839 6.5273 -3.9092 47 1 10.9506 10.0177 -4.3984 48 1 9.9032 2.7430 -1.5623 49 1 8.4113 1.9713 -2.1472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273415560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:05 Heat of formation + Delta-G solvation = -145.651953 kcal Electronic energy + Delta-G solvation = -30320.895142 eV Core-core repulsion = 26055.783846 eV Total energy + Delta-G solvation = -4265.111296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.44000 -41.60705 -40.51206 -38.08274 -37.49238 -37.00986 -35.30595 -35.06916 -32.19048 -30.88016 -28.96856 -28.63468 -27.80803 -27.27161 -26.35055 -25.54045 -23.78441 -23.09913 -21.38811 -20.99747 -19.64356 -18.76460 -18.66507 -18.56811 -17.84520 -17.54348 -17.42309 -17.15137 -16.75649 -16.50978 -16.24277 -15.93541 -15.59372 -15.17518 -14.98859 -14.77576 -14.53811 -14.49941 -14.28725 -14.08139 -14.02287 -13.67848 -13.47263 -13.32139 -13.20926 -12.91919 -12.88506 -12.78040 -12.59048 -12.55078 -12.14775 -12.04004 -11.91985 -11.89656 -11.77650 -11.70437 -11.46140 -11.37164 -11.16950 -10.61471 -10.41380 -9.89552 -9.65040 -8.24342 -6.37022 1.12250 1.37772 1.39603 1.47064 1.52888 1.67247 1.85975 2.37960 2.41693 2.81611 3.09097 3.21399 3.31658 3.57916 3.60870 3.77612 3.90237 4.09060 4.14052 4.23715 4.25820 4.28312 4.31692 4.34019 4.34970 4.43599 4.50257 4.57611 4.58520 4.67523 4.70630 4.71586 4.77402 4.82754 4.91208 5.00604 5.03310 5.15193 5.26289 5.32040 5.42537 5.45687 5.55079 5.76859 5.82076 5.90376 6.14562 6.43265 6.67113 6.78654 7.06339 7.32612 8.88059 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002186 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.895310 B =12805.193109 C =13578.138352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.071 4.071 6 H 0.120 0.880 7 C -0.130 4.130 8 C 0.036 3.964 9 N -0.463 5.463 10 C 0.035 3.965 11 C 0.066 3.934 12 C -0.016 4.016 13 C 0.094 3.906 14 N -0.598 5.598 15 C 0.129 3.871 16 C 0.026 3.974 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.282 1.282 25 C 0.470 3.530 26 O -0.593 6.593 27 C 0.065 3.935 28 O -0.342 6.342 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.091 0.909 45 H -0.003 1.003 46 H -0.027 1.027 47 H 0.264 0.736 48 H 0.138 0.862 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -20.264 13.443 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.090 4.090 6 H 0.138 0.862 7 C -0.187 4.187 8 C -0.093 4.093 9 N -0.186 5.186 10 C -0.093 4.093 11 C 0.025 3.975 12 C -0.144 4.144 13 C -0.029 4.029 14 N -0.330 5.330 15 C 0.006 3.994 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.208 1.208 25 C 0.259 3.741 26 O -0.474 6.474 27 C -0.014 4.014 28 O -0.260 6.260 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.015 0.985 46 H -0.008 1.008 47 H 0.073 0.927 48 H 0.156 0.844 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.279 -20.484 13.692 31.285 hybrid contribution -0.176 1.711 -1.483 2.271 sum -19.455 -18.773 12.209 29.664 Atomic orbital electron populations 1.23538 0.74961 1.05666 1.02429 1.86504 1.24816 1.32902 1.83541 1.24195 0.92708 0.81099 0.70930 1.90669 1.68106 1.37317 1.46819 1.20915 0.85222 0.98736 1.04136 0.86233 1.21643 1.03019 1.00093 0.93959 1.22508 0.89074 0.94521 1.03175 1.68504 1.11491 1.24046 1.14531 1.24035 0.95313 0.91611 0.98358 1.23056 0.84870 0.92841 0.96754 1.24729 0.97848 0.99856 0.92011 1.22286 0.93754 0.98635 0.88216 1.47730 1.34723 1.30522 1.19979 1.21515 1.00506 0.91208 0.86127 1.19156 0.93341 0.92623 0.96119 1.21572 1.26286 1.08710 1.01468 0.91548 1.26048 0.94683 0.99335 0.99957 1.70130 1.28438 1.26345 1.32383 0.85306 0.78077 0.78254 0.78825 1.18205 1.19898 1.20791 1.21690 0.80175 0.82671 0.89603 1.90734 1.40085 1.74297 1.42332 1.22764 1.00734 0.94920 0.82986 1.88111 1.28354 1.78835 1.30668 0.91978 0.92159 0.85143 0.89577 0.92678 0.91103 0.89748 0.92716 0.87169 0.87315 0.88590 0.88007 0.91268 0.87171 0.92415 0.89087 0.98454 1.00848 0.92736 0.84417 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.36 -5.26 10.47 -51.34 -0.54 -5.80 16 3 C 0.47 7.78 7.26 71.24 0.52 8.29 16 4 O -0.54 -12.07 15.67 21.96 0.34 -11.73 16 5 C -0.07 -0.89 3.02 -11.54 -0.03 -0.93 16 6 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.13 -1.41 9.01 71.98 0.65 -0.76 16 8 C 0.04 0.49 3.53 86.30 0.30 0.80 16 9 N -0.46 -6.71 5.62 -920.32 -5.17 -11.88 16 10 C 0.04 0.53 7.36 86.20 0.63 1.16 16 11 C 0.07 1.32 1.16 -10.65 -0.01 1.31 16 12 C -0.02 -0.24 7.07 86.21 0.61 0.37 16 13 C 0.09 2.39 5.88 86.28 0.51 2.90 16 14 N -0.60 -21.15 2.83 -825.54 -2.34 -23.49 16 15 C 0.13 5.50 5.21 86.38 0.45 5.95 16 16 C 0.03 1.41 5.29 29.85 0.16 1.57 16 17 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 18 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.93 -58.42 13.29 21.45 0.28 -58.13 16 21 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 C 0.47 17.12 7.57 87.65 0.66 17.78 16 26 O -0.59 -27.67 16.33 -3.05 -0.05 -27.72 16 27 C 0.06 1.63 6.65 71.06 0.47 2.10 16 28 O -0.34 -8.30 10.66 -148.98 -1.59 -9.88 16 29 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 31 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.99 7.75 -2.38 -0.02 0.97 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 35 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.05 0.80 7.19 -2.39 -0.02 0.79 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.11 1.27 7.88 -2.38 -0.02 1.25 16 39 H 0.10 1.30 7.25 -2.39 -0.02 1.28 16 40 H 0.10 1.52 7.01 -2.39 -0.02 1.50 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 2.22 7.77 -2.39 -0.02 2.20 16 43 H 0.06 2.67 7.28 -2.39 -0.02 2.66 16 44 H 0.09 3.36 7.96 -2.39 -0.02 3.34 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H -0.03 -1.74 8.14 -2.38 -0.02 -1.75 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.12 2.22 7.15 -2.39 -0.02 2.20 16 Total: -1.00 -80.84 400.74 0.72 -80.12 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.93 Total: 10.42 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.81 Total: 11.03 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -7.22 Total: -93.50 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -1.83 Total: -55.13 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -80.84 0.72 -80.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273415560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.532 kcal (2) G-P(sol) polarization free energy of solvation -80.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds