Wall clock time and date at job start Tue Mar 31 2020 22:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46965 * 2 1 4 4 O 1.45192 * 109.47350 * 120.00094 * 2 1 3 5 5 C 1.34233 * 117.00096 * 90.00001 * 4 2 1 6 6 O 1.20825 * 119.99868 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99979 * 180.02562 * 5 4 2 8 8 N 1.46506 * 109.46652 * 179.97438 * 7 5 4 9 9 C 1.46290 * 118.72450 * 270.03783 * 8 7 5 10 10 C 1.52454 * 109.56650 * 164.05723 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.35551 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42571 * 112.70892 * 44.96581 * 10 9 8 25 25 C 1.43063 * 112.97313 * 296.16735 * 24 10 9 26 26 C 1.33713 * 118.72327 * 90.00443 * 8 7 5 27 27 O 1.21281 * 118.36135 * 3.31885 * 26 8 7 28 28 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47670 * 299.99692 * 1 2 3 30 30 H 1.09001 * 109.47550 * 59.99788 * 1 2 3 31 31 H 1.08996 * 109.46912 * 240.00384 * 2 1 3 32 32 H 1.08996 * 109.47043 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47159 * 300.00452 * 3 2 1 34 34 H 1.09005 * 109.46792 * 60.00477 * 3 2 1 35 35 H 1.08996 * 109.47264 * 60.00391 * 7 5 4 36 36 H 1.08998 * 109.47327 * 300.00107 * 7 5 4 37 37 H 1.08997 * 109.47105 * 44.02186 * 9 8 7 38 38 H 1.09001 * 109.44349 * 284.07403 * 9 8 7 39 39 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 40 40 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 41 41 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 42 42 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 43 43 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 44 44 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 45 45 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 46 46 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 47 47 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 48 48 H 1.08998 * 109.35067 * 167.37378 * 25 24 10 49 49 H 1.09007 * 109.34082 * 287.06565 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7183 -2.7853 2.2745 8 7 2.8563 -4.1979 1.9112 9 6 1.7126 -5.0890 2.1063 10 6 1.9278 -6.3760 1.3179 11 6 1.4350 -6.3168 -0.1282 12 7 0.9349 -7.6944 0.0462 13 6 -0.3897 -7.8553 -0.5681 14 6 -0.7653 -9.3383 -0.5894 15 6 -2.1239 -9.5034 -1.2203 16 1 -2.6653 -8.6373 -1.5713 17 6 -2.6733 -10.7609 -1.3550 18 7 -2.0140 -11.8156 -0.9278 19 14 -4.3540 -10.9662 -2.1438 20 1 -4.1941 -11.1507 -3.6086 21 1 -5.0300 -12.1555 -1.5660 22 1 -5.1741 -9.7558 -1.8840 23 6 0.8175 -7.4124 1.4902 24 8 3.2459 -6.8985 1.4664 25 6 4.2536 -6.0291 0.9416 26 6 4.0225 -4.6225 1.4137 27 8 4.9395 -3.8322 1.3404 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0088 -2.6896 3.0964 36 1 3.6871 -2.3928 2.5833 37 1 0.8049 -4.5968 1.7570 38 1 1.6128 -5.3247 3.1658 39 1 2.2399 -6.2359 -0.8588 40 1 0.6440 -5.5842 -0.2882 41 1 -0.3661 -7.4718 -1.5882 42 1 -1.1287 -7.3016 0.0111 43 1 -0.7889 -9.7218 0.4306 44 1 -0.0265 -9.8920 -1.1687 45 1 -2.4006 -12.7003 -1.0223 46 1 -0.1421 -6.9787 1.7717 47 1 1.1024 -8.2538 2.1219 48 1 5.2335 -6.3669 1.2789 49 1 4.2189 -6.0524 -0.1477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:11 Heat of formation + Delta-G solvation = -114.055803 kcal Electronic energy + Delta-G solvation = -30682.406470 eV Core-core repulsion = 26418.665286 eV Total energy + Delta-G solvation = -4263.741184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68468 -40.73828 -39.57428 -37.26295 -36.85263 -35.64779 -33.58640 -33.42096 -31.33483 -29.90973 -28.98580 -27.72322 -26.83863 -25.89958 -25.73182 -23.46957 -22.81706 -21.23446 -20.67656 -20.15105 -18.77455 -18.34930 -17.81894 -17.22457 -16.71665 -16.48054 -16.39330 -15.91936 -15.75972 -15.13680 -14.89504 -14.65590 -14.49971 -14.29105 -14.14268 -13.94850 -13.70806 -13.56403 -13.29177 -12.82207 -12.75816 -12.71295 -12.51056 -12.46123 -12.11040 -12.08151 -11.85805 -11.65924 -11.34069 -11.14643 -11.05150 -10.93192 -10.87318 -10.81647 -10.52346 -10.26144 -9.85438 -9.67852 -9.43353 -9.28177 -9.09209 -8.41513 -8.33271 -6.00006 -4.03211 1.82826 1.89409 2.29682 2.64555 3.29127 3.31137 3.37369 3.39863 3.91855 4.18518 4.20916 4.28884 4.36514 4.44743 4.47512 4.52236 4.59743 4.71818 4.89724 4.95626 5.04490 5.08570 5.09860 5.23909 5.27476 5.32250 5.35582 5.35764 5.39357 5.44818 5.58317 5.59849 5.69456 5.71792 5.74900 5.82222 6.03527 6.15449 6.23817 6.66227 6.72793 6.96814 6.99406 7.34134 7.41522 7.65450 7.72541 7.86772 8.06216 8.40708 9.04181 9.60530 11.11182 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002585 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.949765 B =10827.742186 C =12614.861664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 C -0.149 4.149 4 O -0.354 6.354 5 C 0.444 3.556 6 O -0.494 6.494 7 C 0.117 3.883 8 N -0.588 5.588 9 C 0.103 3.897 10 C 0.065 3.935 11 C -0.019 4.019 12 N -0.456 5.456 13 C 0.027 3.973 14 C 0.034 3.966 15 C -0.524 4.524 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.028 3.972 24 O -0.326 6.326 25 C 0.052 3.948 26 C 0.500 3.500 27 O -0.543 6.543 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.261 0.739 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.135 0.865 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 24.477 8.627 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.206 4.206 4 O -0.271 6.271 5 C 0.284 3.716 6 O -0.380 6.380 7 C -0.007 4.007 8 N -0.322 5.322 9 C -0.020 4.020 10 C 0.024 3.976 11 C -0.148 4.148 12 N -0.178 5.178 13 C -0.101 4.101 14 C -0.004 4.004 15 C -0.563 4.563 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.102 4.102 24 O -0.243 6.243 25 C -0.027 4.027 26 C 0.289 3.711 27 O -0.420 6.420 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.152 0.848 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.184 23.744 8.065 27.065 hybrid contribution -1.756 0.729 -0.621 2.001 sum 8.427 24.473 7.444 26.933 Atomic orbital electron populations 1.22211 0.94090 1.03222 1.03185 1.22758 0.94672 0.93051 0.86961 1.21893 1.02182 0.93349 1.03217 1.86540 1.77101 1.22011 1.41456 1.24309 0.74719 0.81649 0.90885 1.90694 1.46950 1.69984 1.30356 1.20928 1.05569 0.81043 0.93195 1.47201 1.13442 1.07637 1.63894 1.22140 0.88719 0.89528 1.01604 1.22572 0.85536 0.93094 0.96439 1.24309 1.00782 0.93669 0.96065 1.69138 1.24267 1.20868 1.03558 1.22933 0.86659 1.02375 0.98110 1.18957 0.95825 0.88076 0.97521 1.21194 1.02783 0.92591 1.39769 0.92869 1.25000 0.97622 0.96039 0.95639 1.69980 1.37987 0.98355 1.46699 0.86602 0.84256 0.77606 0.79555 1.20650 1.21190 1.19961 1.23821 0.94669 0.97213 0.94454 1.88169 1.12861 1.42759 1.80517 1.22757 0.94256 0.84797 1.00851 1.21114 0.81700 0.91987 0.76330 1.90728 1.41150 1.55553 1.54615 0.91890 0.91463 0.90580 0.89713 0.91626 0.90290 0.91320 0.85831 0.85117 0.89283 0.89507 0.89738 0.90519 0.92050 0.94828 0.96504 0.95720 0.92961 0.89656 0.88240 0.84775 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.55 37.16 0.35 -0.89 16 2 C 0.08 0.68 3.18 -26.73 -0.09 0.59 16 3 C -0.15 -0.88 9.57 37.16 0.36 -0.53 16 4 O -0.35 -3.41 9.88 -39.27 -0.39 -3.80 16 5 C 0.44 4.81 7.99 36.00 0.29 5.10 16 6 O -0.49 -6.90 15.65 -18.75 -0.29 -7.20 16 7 C 0.12 1.00 5.92 -5.19 -0.03 0.97 16 8 N -0.59 -6.22 2.33 -176.10 -0.41 -6.62 16 9 C 0.10 1.00 5.90 -4.44 -0.03 0.97 16 10 C 0.06 0.82 1.22 -91.03 -0.11 0.71 16 11 C -0.02 -0.28 6.86 -7.27 -0.05 -0.33 16 12 N -0.46 -8.20 6.33 -244.69 -1.55 -9.75 16 13 C 0.03 0.55 4.75 -3.83 -0.02 0.53 16 14 C 0.03 0.88 5.30 -27.88 -0.15 0.73 16 15 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.03 0.40 7.15 -7.28 -0.05 0.35 16 24 O -0.33 -4.36 10.68 -35.23 -0.38 -4.73 16 25 C 0.05 0.61 6.69 35.75 0.24 0.85 16 26 C 0.50 6.27 7.57 -11.72 -0.09 6.18 16 27 O -0.54 -8.10 16.28 5.56 0.09 -8.01 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.84 7.16 -51.93 -0.37 0.47 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.12 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.13 1.10 7.19 -51.93 -0.37 0.72 16 37 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.27 7.10 -51.93 -0.37 0.90 16 40 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 41 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 42 H 0.03 0.65 7.30 -51.93 -0.38 0.27 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 1.10 7.38 -51.93 -0.38 0.72 16 47 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.10 1.09 7.24 -51.92 -0.38 0.71 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -35.27 402.13 -9.02 -44.29 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.09 Total: -2.32 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.22 Total: 1.69 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -1.22 Total: -42.55 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.97 Total: -23.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.27 -9.02 -44.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.770 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds