Wall clock time and date at job start Tue Mar 31 2020 22:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46965 * 2 1 4 4 O 1.45192 * 109.47350 * 120.00094 * 2 1 3 5 5 C 1.34233 * 117.00096 * 90.00001 * 4 2 1 6 6 O 1.20825 * 119.99868 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99979 * 180.02562 * 5 4 2 8 8 N 1.46506 * 109.46652 * 179.97438 * 7 5 4 9 9 C 1.46290 * 118.72450 * 270.03783 * 8 7 5 10 10 C 1.52454 * 109.56650 * 164.05723 * 9 8 7 11 11 C 1.52889 * 114.26316 * 272.35551 * 10 9 8 12 12 N 1.47594 * 87.78308 * 220.28477 * 11 10 9 13 13 C 1.46896 * 110.99966 * 138.23453 * 12 11 10 14 14 C 1.52996 * 109.47256 * 170.00148 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47599 * 87.95103 * 26.49806 * 12 11 10 24 24 O 1.42571 * 112.70892 * 44.96581 * 10 9 8 25 25 C 1.43063 * 112.97313 * 296.16735 * 24 10 9 26 26 C 1.33713 * 118.72327 * 90.00443 * 8 7 5 27 27 O 1.21281 * 118.36135 * 3.31885 * 26 8 7 28 28 H 1.09003 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47670 * 299.99692 * 1 2 3 30 30 H 1.09001 * 109.47550 * 59.99788 * 1 2 3 31 31 H 1.08996 * 109.46912 * 240.00384 * 2 1 3 32 32 H 1.08996 * 109.47043 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47159 * 300.00452 * 3 2 1 34 34 H 1.09005 * 109.46792 * 60.00477 * 3 2 1 35 35 H 1.08996 * 109.47264 * 60.00391 * 7 5 4 36 36 H 1.08998 * 109.47327 * 300.00107 * 7 5 4 37 37 H 1.08997 * 109.47105 * 44.02186 * 9 8 7 38 38 H 1.09001 * 109.44349 * 284.07403 * 9 8 7 39 39 H 1.09004 * 113.50172 * 105.56321 * 11 10 9 40 40 H 1.08994 * 113.50064 * 335.01550 * 11 10 9 41 41 H 1.09004 * 109.46774 * 50.00347 * 13 12 11 42 42 H 1.09000 * 109.47723 * 290.00735 * 13 12 11 43 43 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 44 44 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 45 45 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 46 46 H 1.09003 * 113.49644 * 88.22696 * 23 12 11 47 47 H 1.08995 * 113.49808 * 218.76337 * 23 12 11 48 48 H 1.08998 * 109.35067 * 167.37378 * 25 24 10 49 49 H 1.09007 * 109.34082 * 287.06565 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0850 6 8 1.9982 -2.5748 0.0409 7 6 2.7183 -2.7853 2.2745 8 7 2.8563 -4.1979 1.9112 9 6 1.7126 -5.0890 2.1063 10 6 1.9278 -6.3760 1.3179 11 6 1.4350 -6.3168 -0.1282 12 7 0.9349 -7.6944 0.0462 13 6 -0.3897 -7.8553 -0.5681 14 6 -0.7653 -9.3383 -0.5894 15 6 -2.1239 -9.5034 -1.2203 16 1 -2.6653 -8.6373 -1.5713 17 6 -2.6733 -10.7609 -1.3550 18 7 -2.0140 -11.8156 -0.9278 19 14 -4.3540 -10.9662 -2.1438 20 1 -4.1941 -11.1507 -3.6086 21 1 -5.0300 -12.1555 -1.5660 22 1 -5.1741 -9.7558 -1.8840 23 6 0.8175 -7.4124 1.4902 24 8 3.2459 -6.8985 1.4664 25 6 4.2536 -6.0291 0.9416 26 6 4.0225 -4.6225 1.4137 27 8 4.9395 -3.8322 1.3404 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 2.0088 -2.6896 3.0964 36 1 3.6871 -2.3928 2.5833 37 1 0.8049 -4.5968 1.7570 38 1 1.6128 -5.3247 3.1658 39 1 2.2399 -6.2359 -0.8588 40 1 0.6440 -5.5842 -0.2882 41 1 -0.3661 -7.4718 -1.5882 42 1 -1.1287 -7.3016 0.0111 43 1 -0.7889 -9.7218 0.4306 44 1 -0.0265 -9.8920 -1.1687 45 1 -2.4006 -12.7003 -1.0223 46 1 -0.1421 -6.9787 1.7717 47 1 1.1024 -8.2538 2.1219 48 1 5.2335 -6.3669 1.2789 49 1 4.2189 -6.0524 -0.1477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:11 Heat of formation + Delta-G solvation = -139.538866 kcal Electronic energy + Delta-G solvation = -30683.511499 eV Core-core repulsion = 26418.665286 eV Total energy + Delta-G solvation = -4264.846212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66604 -41.62818 -40.61729 -38.08297 -37.99186 -36.53401 -35.46411 -34.21286 -33.00597 -30.85690 -30.24399 -28.24184 -27.95429 -27.17488 -27.02570 -24.94544 -23.76346 -22.40257 -21.77567 -21.34928 -19.76145 -19.13823 -18.80572 -18.53353 -18.09104 -17.53508 -17.29876 -16.96175 -16.75114 -16.57437 -16.26729 -15.84988 -15.62985 -15.28352 -15.18144 -14.87704 -14.66245 -14.42352 -14.27179 -14.21426 -13.89606 -13.55566 -13.43441 -13.32363 -13.21303 -13.18367 -13.10709 -12.78051 -12.74714 -12.60126 -12.43494 -12.00750 -11.95880 -11.86515 -11.72935 -11.54592 -11.40918 -11.31605 -11.18869 -10.60881 -10.55878 -10.13732 -9.75239 -8.19800 -6.31985 0.99629 1.09227 1.40231 1.41910 1.44334 1.52753 1.88040 2.29080 2.40207 2.91599 3.13423 3.14222 3.19701 3.49567 3.58997 3.76912 3.89243 3.94964 4.05715 4.10099 4.11001 4.14743 4.24207 4.27932 4.32706 4.38362 4.49460 4.54292 4.59457 4.63395 4.66381 4.72814 4.74561 4.78531 4.81292 4.98171 5.03999 5.09869 5.18158 5.31114 5.44778 5.45863 5.69668 5.72672 5.80027 6.04914 6.08239 6.26574 6.60476 6.75177 6.85532 7.37446 8.92312 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002585 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.949765 B =10827.742186 C =12614.861664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 C -0.144 4.144 4 O -0.352 6.352 5 C 0.443 3.557 6 O -0.532 6.532 7 C 0.117 3.883 8 N -0.586 5.586 9 C 0.107 3.893 10 C 0.079 3.921 11 C -0.016 4.016 12 N -0.489 5.489 13 C 0.045 3.955 14 C 0.041 3.959 15 C -0.545 4.545 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.260 1.260 23 C 0.026 3.974 24 O -0.341 6.341 25 C 0.052 3.948 26 C 0.497 3.503 27 O -0.572 6.572 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.049 0.951 43 H -0.007 1.007 44 H -0.015 1.015 45 H 0.264 0.736 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.153 0.847 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 26.702 9.761 29.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.201 4.201 4 O -0.269 6.269 5 C 0.286 3.714 6 O -0.421 6.421 7 C -0.007 4.007 8 N -0.318 5.318 9 C -0.015 4.015 10 C 0.037 3.963 11 C -0.145 4.145 12 N -0.212 5.212 13 C -0.083 4.083 14 C 0.004 3.996 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.184 1.184 23 C -0.103 4.103 24 O -0.259 6.259 25 C -0.027 4.027 26 C 0.286 3.714 27 O -0.453 6.453 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.004 0.996 45 H 0.072 0.928 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.170 0.830 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.846 26.002 9.221 28.972 hybrid contribution -1.286 0.047 -0.984 1.620 sum 7.560 26.049 8.238 28.348 Atomic orbital electron populations 1.22189 0.93136 1.02377 1.04529 1.22966 0.95535 0.94008 0.85783 1.21902 1.01899 0.91745 1.04573 1.86543 1.76839 1.21549 1.41924 1.24794 0.73768 0.81918 0.90947 1.90684 1.48852 1.70683 1.31897 1.21245 1.06893 0.79334 0.93223 1.47233 1.12920 1.08721 1.62940 1.22210 0.88679 0.87704 1.02917 1.22407 0.84875 0.93893 0.95080 1.24313 1.00656 0.91841 0.97719 1.69030 1.22618 1.23578 1.05936 1.22558 0.88768 0.98400 0.98558 1.18779 0.94369 0.91401 0.95059 1.21635 1.03687 0.93148 1.39847 0.92009 1.25995 1.02062 0.95660 0.96086 1.70125 1.40110 0.98971 1.47964 0.85423 0.78940 0.78065 0.78452 1.20035 1.20669 1.18427 1.23898 0.96532 0.97778 0.92062 1.88149 1.13361 1.43723 1.80623 1.22859 0.94606 0.84516 1.00702 1.21194 0.82079 0.91935 0.76197 1.90713 1.42243 1.56228 1.56089 0.93751 0.90180 0.89191 0.91903 0.92077 0.88616 0.90261 0.81410 0.84795 0.87908 0.86231 0.90597 0.89682 0.92649 0.93302 0.98861 0.99648 0.92757 0.87492 0.89068 0.82973 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.55 71.98 0.69 -1.49 16 2 C 0.07 1.14 3.18 30.59 0.10 1.23 16 3 C -0.14 -1.46 9.57 71.98 0.69 -0.77 16 4 O -0.35 -6.28 9.88 -51.44 -0.51 -6.79 16 5 C 0.44 9.02 7.99 71.24 0.57 9.58 16 6 O -0.53 -14.66 15.65 21.97 0.34 -14.32 16 7 C 0.12 1.68 5.92 85.63 0.51 2.19 16 8 N -0.59 -11.08 2.33 -830.03 -1.93 -13.01 16 9 C 0.11 1.75 5.90 86.24 0.51 2.26 16 10 C 0.08 1.87 1.22 -11.06 -0.01 1.86 16 11 C -0.02 -0.47 6.86 83.69 0.57 0.11 16 12 N -0.49 -17.72 6.33 -928.83 -5.88 -23.60 16 13 C 0.05 1.88 4.75 86.30 0.41 2.29 16 14 C 0.04 2.24 5.30 29.85 0.16 2.40 16 15 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 16 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 19 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 23 C 0.03 0.73 7.15 83.68 0.60 1.33 16 24 O -0.34 -8.82 10.68 -148.98 -1.59 -10.42 16 25 C 0.05 1.17 6.69 71.07 0.48 1.64 16 26 C 0.50 11.92 7.57 87.65 0.66 12.58 16 27 O -0.57 -16.75 16.28 -3.03 -0.05 -16.80 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.27 7.16 -2.39 -0.02 1.25 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.17 0.91 8.04 -2.39 -0.02 0.89 16 36 H 0.13 1.95 7.19 -2.39 -0.02 1.93 16 37 H 0.10 1.48 7.86 -2.39 -0.02 1.46 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 2.30 7.10 -2.38 -0.02 2.29 16 40 H 0.09 2.32 7.67 -2.39 -0.02 2.31 16 41 H 0.05 2.33 8.08 -2.38 -0.02 2.31 16 42 H 0.05 1.86 7.30 -2.39 -0.02 1.84 16 43 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 44 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 46 H 0.11 2.52 7.38 -2.39 -0.02 2.50 16 47 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.09 2.13 7.24 -2.38 -0.02 2.11 16 Total: -1.00 -78.86 402.13 0.25 -78.61 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.93 Total: 12.49 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.62 Total: 4.78 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -7.53 Total: -93.81 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.80 Total: -48.32 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.86 0.25 -78.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.929 kcal (2) G-P(sol) polarization free energy of solvation -78.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds