Wall clock time and date at job start Tue Mar 31 2020 23:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47196 * 239.99840 * 2 1 3 5 5 C 1.53006 * 109.47011 * 174.99937 * 4 2 1 6 6 C 1.52999 * 109.47011 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47423 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00154 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99934 * 359.97438 * 8 7 6 10 10 C 1.38810 * 119.99685 * 180.02562 * 8 7 6 11 11 N 1.31624 * 120.00222 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99882 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47016 * 59.99825 * 12 10 8 14 14 H 1.48501 * 109.47243 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47004 * 299.99872 * 12 10 8 16 16 N 1.46500 * 109.47377 * 119.99324 * 2 1 3 17 17 C 1.34769 * 120.00612 * 275.00291 * 16 2 1 18 18 O 1.21284 * 119.99943 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00514 * 179.97438 * 17 16 2 20 20 H 1.08996 * 109.47377 * 300.00838 * 19 17 16 21 21 C 1.53008 * 109.46796 * 60.00407 * 19 17 16 22 22 C 1.50703 * 109.47341 * 180.02562 * 19 17 16 23 23 C 1.38262 * 119.96338 * 300.02299 * 22 19 17 24 24 C 1.38209 * 120.06589 * 179.97438 * 23 22 19 25 25 C 1.38411 * 120.00568 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.04187 * 180.02562 * 25 24 23 27 27 C 1.38656 * 119.92371 * 359.71630 * 25 24 23 28 28 F 1.35104 * 120.03237 * 180.29742 * 27 25 24 29 29 C 1.38212 * 119.96274 * 120.00577 * 22 19 17 30 30 H 1.09006 * 109.47335 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47248 * 60.00399 * 1 2 3 32 32 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46882 * 294.99462 * 4 2 1 34 34 H 1.08994 * 109.47216 * 55.00198 * 4 2 1 35 35 H 1.09000 * 109.46910 * 299.99508 * 5 4 2 36 36 H 1.08993 * 109.47302 * 59.99711 * 5 4 2 37 37 H 1.08999 * 109.47361 * 300.00124 * 6 5 4 38 38 H 1.09001 * 109.47075 * 59.99583 * 6 5 4 39 39 H 0.97004 * 119.99238 * 359.97438 * 7 6 5 40 40 H 0.96998 * 119.99922 * 180.02562 * 11 10 8 41 41 H 0.97006 * 119.99854 * 95.00194 * 16 2 1 42 42 H 1.08995 * 109.46795 * 180.02562 * 21 19 17 43 43 H 1.09001 * 109.46717 * 299.99968 * 21 19 17 44 44 H 1.08997 * 109.47069 * 59.99608 * 21 19 17 45 45 H 1.07999 * 119.96365 * 359.97438 * 23 22 19 46 46 H 1.07998 * 119.99822 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99812 * 359.97109 * 29 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2301 -2.6253 8 6 6.2186 -1.8043 -3.6635 9 1 5.6815 -2.3341 -4.4364 10 6 7.6019 -1.7062 -3.7219 11 7 8.2564 -1.0610 -2.7797 12 14 8.5347 -2.4889 -5.1386 13 1 8.0784 -1.8939 -6.4204 14 1 9.9894 -2.2429 -4.9695 15 1 8.2778 -3.9514 -5.1525 16 7 2.0183 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3571 18 8 1.8590 1.1587 2.4115 19 6 2.6489 -0.7285 3.5878 20 1 1.9762 -1.5504 3.8326 21 6 4.0515 -1.2794 3.3223 22 6 2.6991 0.2397 4.7415 23 6 3.4917 1.3698 4.6606 24 6 3.5389 2.2595 5.7172 25 6 2.7928 2.0195 6.8580 26 9 2.8380 2.8890 7.8910 27 6 1.9939 0.8890 6.9369 28 9 1.2600 0.6557 8.0470 29 6 1.9526 -0.0027 5.8791 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2054 34 1 1.6054 -0.2618 -2.1369 35 1 3.8531 0.4370 -1.3574 36 1 3.9995 -1.0727 -0.4259 37 1 3.7864 -2.3843 -2.5200 38 1 3.6401 -0.8742 -3.4507 39 1 6.0171 -0.7546 -1.9308 40 1 9.2231 -0.9922 -2.8208 41 1 2.2491 -1.6317 1.1527 42 1 4.4143 -1.7936 4.2122 43 1 4.0147 -1.9799 2.4879 44 1 4.7243 -0.4576 3.0773 45 1 4.0744 1.5574 3.7709 46 1 4.1586 3.1416 5.6530 47 1 1.3333 -0.8854 5.9407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277362378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:51 Heat of formation + Delta-G solvation = -112.507653 kcal Electronic energy + Delta-G solvation = -28870.431089 eV Core-core repulsion = 24495.669522 eV Total energy + Delta-G solvation = -4374.761567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.71583 -48.79347 -40.65725 -39.00508 -36.82117 -34.87896 -34.41562 -32.55266 -31.28437 -31.05384 -29.52837 -29.09658 -25.76876 -25.11426 -23.59910 -23.28185 -22.55222 -20.99264 -20.78174 -20.31852 -18.24366 -17.81158 -17.35430 -17.04660 -16.76813 -16.54336 -16.27712 -15.57753 -15.20867 -14.89245 -14.76311 -14.71540 -14.46457 -14.23923 -14.15436 -13.87704 -13.53037 -13.33268 -13.15794 -13.03644 -12.83878 -12.60799 -12.34791 -12.16758 -12.11678 -11.92752 -11.81018 -11.37855 -11.33641 -11.19531 -10.87098 -10.83507 -10.51457 -10.44818 -10.06351 -9.91634 -9.70935 -9.36713 -9.16883 -8.90963 -8.88602 -6.94105 -5.78450 -3.07174 0.58703 0.70633 2.47047 2.84976 3.21412 3.42187 3.46549 3.47700 3.48759 3.96433 4.09538 4.24004 4.49393 4.56323 4.67962 4.69704 4.76249 4.77355 4.88700 5.00318 5.10392 5.29110 5.37556 5.42990 5.45245 5.48627 5.52043 5.55092 5.58541 5.60422 5.72245 5.75785 5.87393 5.91108 6.01973 6.04957 6.07437 6.16631 6.31803 6.37057 6.42136 6.43220 6.82772 6.86290 7.35530 7.67218 8.06986 8.40777 9.51543 10.10206 10.44479 11.44445 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002078 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.821840 B =13474.265199 C =14708.936918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.152 3.848 7 N -0.734 5.734 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.718 5.718 17 C 0.519 3.481 18 O -0.533 6.533 19 C -0.072 4.072 20 H 0.108 0.892 21 C -0.146 4.146 22 C -0.047 4.047 23 C -0.063 4.063 24 C -0.125 4.125 25 C 0.066 3.934 26 F -0.131 7.131 27 C 0.063 3.937 28 F -0.131 7.131 29 C -0.119 4.119 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.401 0.599 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.141 0.859 46 H 0.147 0.853 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 1.129 18.018 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.162 4.162 5 C -0.162 4.162 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.370 5.370 17 C 0.304 3.696 18 O -0.410 6.410 19 C -0.094 4.094 20 H 0.127 0.873 21 C -0.203 4.203 22 C -0.047 4.047 23 C -0.081 4.081 24 C -0.143 4.143 25 C 0.046 3.954 26 F -0.110 7.110 27 C 0.043 3.957 28 F -0.110 7.110 29 C -0.137 4.137 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.216 0.784 40 H 0.065 0.935 41 H 0.236 0.764 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.936 1.927 17.968 24.094 hybrid contribution 0.658 -0.610 -0.191 0.917 sum -15.278 1.317 17.777 23.477 Atomic orbital electron populations 1.22171 0.95476 1.01978 1.02429 1.21052 0.93569 0.97810 0.83845 0.89295 1.21856 0.96918 1.00769 0.96620 1.21725 0.93590 1.01431 0.99500 1.20649 0.86207 0.96428 0.94232 1.42365 1.00179 1.66233 1.29042 1.19193 0.89438 1.27183 1.01353 0.91282 1.24749 0.96455 1.01213 0.98647 1.69649 1.07282 1.46933 1.34435 0.86263 0.78987 0.78960 0.81949 1.21266 1.21660 1.21268 1.46076 1.67123 1.14205 1.09551 1.20323 0.77565 0.87334 0.84339 1.90732 1.49653 1.15731 1.84841 1.20328 1.00448 0.97372 0.91217 0.87349 1.21858 0.93296 1.02003 1.03144 1.19212 0.96177 0.95702 0.93640 1.20940 0.97179 0.92198 0.97786 1.21089 1.00033 1.01557 0.91670 1.17718 1.01132 0.89351 0.87228 1.91523 1.95296 1.67659 1.56472 1.17555 0.96312 0.96196 0.85654 1.91525 1.74961 1.94350 1.50127 1.20892 1.00989 0.99810 0.92057 0.92364 0.91548 0.92542 0.91418 0.90285 0.91987 0.92038 0.96595 0.96546 0.78354 0.93458 0.76404 0.90912 0.90897 0.91209 0.84155 0.83531 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.15 0.35 -1.11 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.31 4.75 -26.73 -0.13 -1.44 16 5 C -0.12 -1.81 5.22 -26.73 -0.14 -1.95 16 6 C 0.15 2.92 6.26 -4.04 -0.03 2.90 16 7 N -0.73 -18.37 5.60 -59.91 -0.34 -18.71 16 8 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 12 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 N -0.72 -6.50 4.42 -53.81 -0.24 -6.74 16 17 C 0.52 5.33 6.99 -10.99 -0.08 5.26 16 18 O -0.53 -7.41 14.77 5.55 0.08 -7.33 16 19 C -0.07 -0.54 2.90 -92.92 -0.27 -0.81 16 20 H 0.11 0.56 7.87 -51.93 -0.41 0.15 16 21 C -0.15 -1.02 8.90 37.16 0.33 -0.69 16 22 C -0.05 -0.41 4.40 -104.62 -0.46 -0.87 16 23 C -0.06 -0.60 7.92 -39.58 -0.31 -0.91 16 24 C -0.12 -1.16 10.02 -39.53 -0.40 -1.56 16 25 C 0.07 0.70 7.31 -39.36 -0.29 0.41 16 26 F -0.13 -1.50 17.18 2.25 0.04 -1.47 16 27 C 0.06 0.65 7.31 -39.36 -0.29 0.36 16 28 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 29 C -0.12 -1.02 9.65 -39.53 -0.38 -1.40 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 10.07 7.67 -40.82 -0.31 9.75 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.40 2.85 8.02 -40.82 -0.33 2.53 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.48 7.56 -51.93 -0.39 0.08 16 44 H 0.07 0.57 7.39 -51.93 -0.38 0.18 16 45 H 0.14 1.31 7.51 -52.49 -0.39 0.92 16 46 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.14 0.90 7.94 -52.49 -0.42 0.48 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -33.23 399.04 -8.41 -41.64 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.21 Total: 6.09 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.50 Total: -7.94 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.15 Total: -52.78 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.08 Total: -7.33 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.23 -8.41 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.865 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds