Wall clock time and date at job start Tue Mar 31 2020 23:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47196 * 239.99840 * 2 1 3 5 5 C 1.53006 * 109.47011 * 174.99937 * 4 2 1 6 6 C 1.52999 * 109.47011 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47423 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00154 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99934 * 359.97438 * 8 7 6 10 10 C 1.38810 * 119.99685 * 180.02562 * 8 7 6 11 11 N 1.31624 * 120.00222 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99882 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47016 * 59.99825 * 12 10 8 14 14 H 1.48501 * 109.47243 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47004 * 299.99872 * 12 10 8 16 16 N 1.46500 * 109.47377 * 119.99324 * 2 1 3 17 17 C 1.34769 * 120.00612 * 275.00291 * 16 2 1 18 18 O 1.21284 * 119.99943 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00514 * 179.97438 * 17 16 2 20 20 H 1.08996 * 109.47377 * 300.00838 * 19 17 16 21 21 C 1.53008 * 109.46796 * 60.00407 * 19 17 16 22 22 C 1.50703 * 109.47341 * 180.02562 * 19 17 16 23 23 C 1.38262 * 119.96338 * 300.02299 * 22 19 17 24 24 C 1.38209 * 120.06589 * 179.97438 * 23 22 19 25 25 C 1.38411 * 120.00568 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.04187 * 180.02562 * 25 24 23 27 27 C 1.38656 * 119.92371 * 359.71630 * 25 24 23 28 28 F 1.35104 * 120.03237 * 180.29742 * 27 25 24 29 29 C 1.38212 * 119.96274 * 120.00577 * 22 19 17 30 30 H 1.09006 * 109.47335 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47248 * 60.00399 * 1 2 3 32 32 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46882 * 294.99462 * 4 2 1 34 34 H 1.08994 * 109.47216 * 55.00198 * 4 2 1 35 35 H 1.09000 * 109.46910 * 299.99508 * 5 4 2 36 36 H 1.08993 * 109.47302 * 59.99711 * 5 4 2 37 37 H 1.08999 * 109.47361 * 300.00124 * 6 5 4 38 38 H 1.09001 * 109.47075 * 59.99583 * 6 5 4 39 39 H 0.97004 * 119.99238 * 359.97438 * 7 6 5 40 40 H 0.96998 * 119.99922 * 180.02562 * 11 10 8 41 41 H 0.97006 * 119.99854 * 95.00194 * 16 2 1 42 42 H 1.08995 * 109.46795 * 180.02562 * 21 19 17 43 43 H 1.09001 * 109.46717 * 299.99968 * 21 19 17 44 44 H 1.08997 * 109.47069 * 59.99608 * 21 19 17 45 45 H 1.07999 * 119.96365 * 359.97438 * 23 22 19 46 46 H 1.07998 * 119.99822 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99812 * 359.97109 * 29 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0748 -1.3340 -2.5632 7 7 5.5348 -1.2301 -2.6253 8 6 6.2186 -1.8043 -3.6635 9 1 5.6815 -2.3341 -4.4364 10 6 7.6019 -1.7062 -3.7219 11 7 8.2564 -1.0610 -2.7797 12 14 8.5347 -2.4889 -5.1386 13 1 8.0784 -1.8939 -6.4204 14 1 9.9894 -2.2429 -4.9695 15 1 8.2778 -3.9514 -5.1525 16 7 2.0183 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3571 18 8 1.8590 1.1587 2.4115 19 6 2.6489 -0.7285 3.5878 20 1 1.9762 -1.5504 3.8326 21 6 4.0515 -1.2794 3.3223 22 6 2.6991 0.2397 4.7415 23 6 3.4917 1.3698 4.6606 24 6 3.5389 2.2595 5.7172 25 6 2.7928 2.0195 6.8580 26 9 2.8380 2.8890 7.8910 27 6 1.9939 0.8890 6.9369 28 9 1.2600 0.6557 8.0470 29 6 1.9526 -0.0027 5.8791 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2054 34 1 1.6054 -0.2618 -2.1369 35 1 3.8531 0.4370 -1.3574 36 1 3.9995 -1.0727 -0.4259 37 1 3.7864 -2.3843 -2.5200 38 1 3.6401 -0.8742 -3.4507 39 1 6.0171 -0.7546 -1.9308 40 1 9.2231 -0.9922 -2.8208 41 1 2.2491 -1.6317 1.1527 42 1 4.4143 -1.7936 4.2122 43 1 4.0147 -1.9799 2.4879 44 1 4.7243 -0.4576 3.0773 45 1 4.0744 1.5574 3.7709 46 1 4.1586 3.1416 5.6530 47 1 1.3333 -0.8854 5.9407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277362378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:51 Heat of formation + Delta-G solvation = -131.955925 kcal Electronic energy + Delta-G solvation = -28871.274429 eV Core-core repulsion = 24495.669522 eV Total energy + Delta-G solvation = -4375.604907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.53993 -49.62453 -41.42678 -39.77451 -37.88809 -36.46071 -35.14120 -34.07953 -32.40909 -31.92639 -30.84218 -29.84083 -27.20995 -25.84651 -24.79178 -24.31841 -23.55863 -22.33763 -21.69554 -21.09505 -19.11014 -19.02684 -18.56698 -18.12051 -17.57358 -17.36542 -17.10776 -16.60106 -16.32062 -16.05147 -15.94288 -15.56165 -15.41703 -15.29746 -15.22762 -15.02690 -14.87707 -14.45232 -14.08729 -13.86373 -13.74615 -13.46422 -13.31941 -13.13416 -13.00305 -12.92063 -12.72794 -12.60916 -12.49200 -12.34846 -12.24481 -12.03690 -12.02582 -11.81663 -11.66658 -11.45621 -10.90315 -10.74005 -10.09291 -9.98646 -9.68010 -8.98124 -7.94176 -5.22900 -0.17129 -0.00862 1.48327 1.51240 1.57429 1.68885 2.11035 2.49044 2.57228 2.75036 3.23742 3.38240 3.39479 3.54753 3.66958 3.86026 4.00252 4.03730 4.09122 4.15479 4.19135 4.26324 4.34128 4.45627 4.62653 4.66788 4.73477 4.76054 4.80579 4.85766 4.88969 4.91796 4.93293 4.97797 5.02381 5.05403 5.17372 5.29589 5.34973 5.38125 5.42663 5.46737 5.53415 5.65294 5.69998 6.28616 6.63132 7.32267 7.34442 8.12347 8.34040 9.29244 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002078 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.821840 B =13474.265199 C =14708.936918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.149 3.851 7 N -0.749 5.749 8 C -0.247 4.247 9 H 0.076 0.924 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.973 3.027 13 H -0.279 1.279 14 H -0.296 1.296 15 H -0.275 1.275 16 N -0.710 5.710 17 C 0.516 3.484 18 O -0.575 6.575 19 C -0.063 4.063 20 H 0.142 0.858 21 C -0.145 4.145 22 C -0.049 4.049 23 C -0.072 4.072 24 C -0.126 4.126 25 C 0.048 3.952 26 F -0.141 7.141 27 C 0.049 3.951 28 F -0.138 7.138 29 C -0.110 4.110 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.016 0.984 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.414 0.586 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.137 0.863 46 H 0.160 0.840 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.022 -0.920 17.406 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.149 4.149 6 C 0.023 3.977 7 N -0.392 5.392 8 C -0.379 4.379 9 H 0.094 0.906 10 C -0.270 4.270 11 N -0.621 5.621 12 Si 0.802 3.198 13 H -0.205 1.205 14 H -0.222 1.222 15 H -0.201 1.201 16 N -0.362 5.362 17 C 0.303 3.697 18 O -0.454 6.454 19 C -0.084 4.084 20 H 0.160 0.840 21 C -0.202 4.202 22 C -0.050 4.050 23 C -0.090 4.090 24 C -0.145 4.145 25 C 0.028 3.972 26 F -0.120 7.120 27 C 0.029 3.971 28 F -0.117 7.117 29 C -0.129 4.129 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.251 0.749 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.155 0.845 46 H 0.177 0.823 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.259 -0.162 17.338 24.465 hybrid contribution 1.007 0.040 -0.035 1.008 sum -16.253 -0.123 17.303 23.739 Atomic orbital electron populations 1.22092 0.94116 1.02969 1.02107 1.20908 0.94500 0.96521 0.84002 0.91860 1.21749 0.93657 1.02253 0.97160 1.21579 0.96352 0.99614 0.97363 1.20868 0.83115 0.97451 0.96288 1.42631 1.02550 1.65867 1.28144 1.19625 0.89987 1.26386 1.01869 0.90626 1.25586 0.97538 1.02474 1.01354 1.69808 1.07091 1.48775 1.36422 0.85215 0.77083 0.78465 0.79032 1.20515 1.22221 1.20134 1.46020 1.66508 1.14733 1.08965 1.20797 0.76807 0.86913 0.85203 1.90721 1.51538 1.17595 1.85522 1.20355 1.01335 0.97530 0.89207 0.83996 1.21868 0.92569 1.01608 1.04145 1.19421 0.95692 0.95679 0.94205 1.21055 0.97549 0.92766 0.97649 1.21235 0.99950 1.02054 0.91257 1.17945 1.02087 0.89734 0.87464 1.91490 1.95463 1.68064 1.56949 1.17790 0.96579 0.96673 0.86044 1.91501 1.75176 1.94416 1.50613 1.21145 1.00571 1.00139 0.91014 0.93803 0.90812 0.90814 0.89283 0.89627 0.93735 0.91766 0.95584 0.96637 0.79606 0.94011 0.74940 0.89496 0.90088 0.92902 0.84489 0.82261 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.48 71.98 0.68 -1.77 16 2 C 0.15 2.71 2.57 44.99 0.12 2.83 16 3 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.11 -2.07 4.75 30.60 0.15 -1.93 16 5 C -0.11 -3.09 5.22 30.60 0.16 -2.94 16 6 C 0.15 5.51 6.26 86.38 0.54 6.05 16 7 N -0.75 -37.35 5.60 -343.46 -1.92 -39.27 16 8 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 9 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 11 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 12 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 N -0.71 -11.43 4.42 -442.55 -1.96 -13.39 16 17 C 0.52 9.91 6.99 87.66 0.61 10.52 16 18 O -0.57 -15.86 14.77 -3.04 -0.04 -15.91 16 19 C -0.06 -0.81 2.90 -12.28 -0.04 -0.85 16 20 H 0.14 0.90 7.87 -2.39 -0.02 0.88 16 21 C -0.14 -1.75 8.90 71.98 0.64 -1.11 16 22 C -0.05 -0.81 4.40 -19.86 -0.09 -0.90 16 23 C -0.07 -1.36 7.92 22.27 0.18 -1.19 16 24 C -0.13 -2.39 10.02 22.30 0.22 -2.17 16 25 C 0.05 1.02 7.31 22.41 0.16 1.19 16 26 F -0.14 -3.33 17.18 44.97 0.77 -2.56 16 27 C 0.05 0.99 7.31 22.41 0.16 1.15 16 28 F -0.14 -3.03 17.18 44.97 0.77 -2.25 16 29 C -0.11 -1.71 9.65 22.30 0.22 -1.49 16 30 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.37 19.82 7.67 -92.71 -0.71 19.11 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.41 4.63 8.02 -92.70 -0.74 3.88 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.85 7.56 -2.39 -0.02 0.84 16 44 H 0.05 0.83 7.39 -2.39 -0.02 0.81 16 45 H 0.14 2.64 7.51 -2.91 -0.02 2.62 16 46 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 47 H 0.17 1.59 7.94 -2.91 -0.02 1.57 16 Total: -1.00 -72.32 399.04 4.49 -67.83 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.46 Total: 26.01 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 5.02 Total: -9.31 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.60 Total: -111.26 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.04 Total: -15.91 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.55 Total: -4.81 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.32 4.49 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.127 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds