Wall clock time and date at job start Tue Mar 31 2020 23:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47436 * 2 1 4 4 C 1.50701 * 109.47143 * 120.00389 * 2 1 3 5 5 O 1.21283 * 120.00052 * 120.00054 * 4 2 1 6 6 N 1.34770 * 119.99922 * 299.99875 * 4 2 1 7 7 C 1.46500 * 120.00256 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.46596 * 325.00243 * 7 6 4 9 9 C 1.53006 * 109.47249 * 84.99846 * 7 6 4 10 10 C 1.52997 * 109.47473 * 205.00145 * 7 6 4 11 11 C 1.53001 * 109.47049 * 64.99864 * 10 7 6 12 12 C 1.53002 * 109.46964 * 180.02562 * 11 10 7 13 13 N 1.46504 * 109.46727 * 180.02562 * 12 11 10 14 14 C 1.36940 * 119.99562 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99899 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99952 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99993 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47280 * 89.99597 * 18 16 14 20 20 H 1.48499 * 109.46811 * 209.99599 * 18 16 14 21 21 H 1.48501 * 109.47190 * 329.99205 * 18 16 14 22 22 C 1.50705 * 109.47358 * 240.00543 * 2 1 3 23 23 C 1.38255 * 119.96796 * 119.99800 * 22 2 1 24 24 C 1.38213 * 120.07071 * 180.02562 * 23 22 2 25 25 C 1.38418 * 119.99800 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.03088 * 180.02562 * 25 24 23 27 27 C 1.38644 * 119.93210 * 0.02562 * 25 24 23 28 28 F 1.35099 * 120.03595 * 179.97438 * 27 25 24 29 29 C 1.38216 * 119.95927 * 299.72871 * 22 2 1 30 30 H 1.08992 * 109.47027 * 299.99853 * 1 2 3 31 31 H 1.09000 * 109.47080 * 60.00255 * 1 2 3 32 32 H 1.08999 * 109.46639 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47002 * 60.00085 * 9 7 6 35 35 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.47050 * 300.00351 * 9 7 6 37 37 H 1.08998 * 109.47192 * 185.00019 * 10 7 6 38 38 H 1.08998 * 109.46934 * 304.99865 * 10 7 6 39 39 H 1.08998 * 109.47250 * 300.00119 * 11 10 7 40 40 H 1.08998 * 109.47252 * 60.00195 * 11 10 7 41 41 H 1.09002 * 109.46615 * 299.99612 * 12 11 10 42 42 H 1.08998 * 109.47254 * 59.99857 * 12 11 10 43 43 H 0.96997 * 120.00417 * 0.02562 * 13 12 11 44 44 H 0.96997 * 119.99979 * 180.02562 * 17 16 14 45 45 H 1.07999 * 119.96152 * 359.97438 * 23 22 2 46 46 H 1.07998 * 120.00085 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00526 * 359.97046 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1955 -0.9404 3.6507 8 1 2.2326 -2.0132 3.4613 9 6 3.5980 -0.4344 3.9943 10 6 1.2516 -0.6616 4.8220 11 6 -0.1184 -1.2774 4.5307 12 6 -1.0626 -0.9980 5.7018 13 7 -2.3742 -1.5882 5.4231 14 6 -3.3878 -1.4658 6.3356 15 1 -3.2205 -0.9339 7.2605 16 6 -4.6308 -2.0245 6.0713 17 7 -5.6049 -1.9074 6.9486 18 14 -4.9203 -2.9439 4.4712 19 1 -4.5911 -4.3797 4.6587 20 1 -6.3452 -2.8104 4.0746 21 1 -4.0551 -2.3723 3.4083 22 6 2.0324 -0.7103 -1.2306 23 6 2.8272 -0.0377 -2.1401 24 6 3.2887 -0.6869 -3.2696 25 6 2.9556 -2.0120 -3.4909 26 9 3.4068 -2.6474 -4.5945 27 6 2.1586 -2.6866 -2.5788 28 9 1.8318 -3.9799 -2.7929 29 6 1.7027 -2.0352 -1.4457 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.1488 0.5384 2.5436 34 1 3.5610 0.6384 4.1835 35 1 3.9618 -0.9484 4.8839 36 1 4.2705 -0.6331 3.1598 37 1 1.6614 -1.1009 5.7314 38 1 1.1452 0.4151 4.9545 39 1 -0.5283 -0.8381 3.6212 40 1 -0.0121 -2.3540 4.3981 41 1 -0.6528 -1.4371 6.6114 42 1 -1.1688 0.0787 5.8339 43 1 -2.5244 -2.0662 4.5925 44 1 -6.4733 -2.2982 6.7641 45 1 3.0870 0.9964 -1.9682 46 1 3.9091 -0.1602 -3.9796 47 1 1.0857 -2.5610 -0.7321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277362379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:53 Heat of formation + Delta-G solvation = -130.087436 kcal Electronic energy + Delta-G solvation = -29107.564348 eV Core-core repulsion = 24732.040464 eV Total energy + Delta-G solvation = -4375.523883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.55525 -49.64291 -41.43354 -39.77873 -37.97263 -36.59453 -35.15685 -34.16006 -32.68685 -31.83365 -31.11707 -29.91763 -27.36555 -25.88986 -24.57349 -24.22555 -23.44565 -22.49174 -21.71342 -21.12457 -19.61967 -19.03462 -18.56898 -18.13230 -17.63267 -17.37074 -17.26344 -16.59576 -16.08496 -16.07229 -15.98423 -15.79198 -15.59181 -15.31327 -15.10303 -14.94043 -14.81275 -14.57703 -14.36435 -13.85200 -13.64853 -13.58368 -13.48769 -13.35949 -13.06409 -12.96734 -12.85070 -12.68263 -12.48117 -12.27808 -12.17532 -12.03647 -12.01190 -11.86531 -11.72939 -11.51461 -10.97625 -10.73944 -10.07404 -10.00849 -9.69187 -9.29749 -8.04055 -5.37240 -0.17025 0.00907 1.36245 1.40039 1.47218 1.67636 2.11638 2.47022 2.49710 2.75796 3.24828 3.27664 3.38730 3.51009 3.57040 3.81953 3.93087 3.99465 4.06907 4.12010 4.16932 4.22439 4.34237 4.42578 4.57875 4.66130 4.68046 4.79396 4.82719 4.83922 4.87188 4.88114 4.93093 4.95640 5.02319 5.03993 5.15562 5.25942 5.33493 5.36680 5.38555 5.44608 5.63533 5.71894 5.75274 6.20697 6.62311 7.07468 7.31751 7.84908 8.02626 9.17528 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002488 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.915295 B =11250.789542 C =12812.981014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 H 0.153 0.847 4 C 0.513 3.487 5 O -0.578 6.578 6 N -0.710 5.710 7 C 0.145 3.855 8 H 0.062 0.938 9 C -0.155 4.155 10 C -0.111 4.111 11 C -0.117 4.117 12 C 0.151 3.849 13 N -0.762 5.762 14 C -0.236 4.236 15 H 0.057 0.943 16 C -0.066 4.066 17 N -0.984 5.984 18 Si 0.955 3.045 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.249 1.249 22 C -0.052 4.052 23 C -0.078 4.078 24 C -0.118 4.118 25 C 0.046 3.954 26 F -0.142 7.142 27 C 0.036 3.964 28 F -0.148 7.148 29 C -0.104 4.104 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.020 0.980 42 H 0.031 0.969 43 H 0.365 0.635 44 H 0.258 0.742 45 H 0.184 0.816 46 H 0.177 0.823 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.918 10.709 -20.934 32.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 H 0.170 0.830 4 C 0.300 3.700 5 O -0.457 6.457 6 N -0.362 5.362 7 C 0.040 3.960 8 H 0.080 0.920 9 C -0.213 4.213 10 C -0.150 4.150 11 C -0.155 4.155 12 C 0.026 3.974 13 N -0.408 5.408 14 C -0.367 4.367 15 H 0.075 0.925 16 C -0.257 4.257 17 N -0.635 5.635 18 Si 0.782 3.218 19 H -0.209 1.209 20 H -0.221 1.221 21 H -0.173 1.173 22 C -0.053 4.053 23 C -0.095 4.095 24 C -0.136 4.136 25 C 0.026 3.974 26 F -0.121 7.121 27 C 0.016 3.984 28 F -0.127 7.127 29 C -0.123 4.123 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.197 0.803 44 H 0.067 0.933 45 H 0.201 0.799 46 H 0.194 0.806 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.338 10.010 -20.836 32.848 hybrid contribution -1.056 -1.461 -0.619 1.905 sum 22.282 8.549 -21.455 32.092 Atomic orbital electron populations 1.21888 0.90770 1.02776 1.04981 1.20402 0.98437 1.01645 0.87873 0.82988 1.20906 0.79463 0.84084 0.85515 1.90737 1.39715 1.27987 1.87251 1.46025 1.53128 1.32275 1.04797 1.20907 0.93944 0.96861 0.84284 0.91969 1.22087 0.95110 1.02494 1.01585 1.21750 0.92804 1.02754 0.97660 1.21659 0.95243 1.00695 0.97879 1.20859 0.83785 0.96103 0.96697 1.42795 1.09883 1.67359 1.20756 1.19075 0.90684 1.28158 0.98744 0.92490 1.25532 0.95802 1.02544 1.01830 1.69884 1.03636 1.52052 1.37893 0.85404 0.77065 0.78703 0.80580 1.20921 1.22066 1.17347 1.19505 0.97207 0.92315 0.96243 1.21426 0.94407 1.02141 0.91546 1.21417 1.01280 0.90705 1.00245 1.18045 1.00692 0.93397 0.85259 1.91489 1.87505 1.82397 1.50671 1.17991 1.02856 0.79667 0.97899 1.91474 1.91388 1.34884 1.94960 1.20903 1.00752 0.95954 0.94669 0.89795 0.89235 0.93686 0.74808 0.90694 0.90966 0.93773 0.89633 0.89133 0.91241 0.93111 0.96185 0.95103 0.80256 0.93322 0.79859 0.80557 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.91 71.98 0.64 -0.84 16 2 C -0.06 -0.66 2.90 -12.28 -0.04 -0.69 16 3 H 0.15 0.39 7.87 -2.39 -0.02 0.37 16 4 C 0.51 9.04 6.98 87.66 0.61 9.65 16 5 O -0.58 -15.58 14.75 -3.04 -0.04 -15.63 16 6 N -0.71 -10.07 4.42 -442.53 -1.96 -12.03 16 7 C 0.14 2.48 2.57 44.99 0.12 2.60 16 8 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 9 C -0.15 -2.25 9.48 71.98 0.68 -1.57 16 10 C -0.11 -1.91 4.75 30.59 0.15 -1.77 16 11 C -0.12 -2.92 5.22 30.60 0.16 -2.76 16 12 C 0.15 5.30 6.26 86.38 0.54 5.84 16 13 N -0.76 -35.02 5.41 -343.44 -1.86 -36.87 16 14 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 15 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.98 -63.16 13.97 21.65 0.30 -62.86 16 18 Si 0.96 45.45 27.73 68.60 1.90 47.35 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 21 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 22 C -0.05 -0.75 4.40 -19.86 -0.09 -0.84 16 23 C -0.08 -0.72 9.67 22.27 0.22 -0.51 16 24 C -0.12 -1.41 10.02 22.31 0.22 -1.19 16 25 C 0.05 0.92 7.31 22.41 0.16 1.08 16 26 F -0.14 -3.19 17.18 44.97 0.77 -2.41 16 27 C 0.04 0.85 7.31 22.41 0.16 1.01 16 28 F -0.15 -4.14 17.18 44.97 0.77 -3.37 16 29 C -0.10 -2.19 7.90 22.31 0.18 -2.01 16 30 H 0.08 0.66 7.56 -2.39 -0.02 0.65 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.66 7.40 -2.39 -0.02 0.65 16 33 H 0.41 3.67 8.02 -92.70 -0.74 2.93 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.62 7.75 -2.39 -0.02 1.61 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.36 16.01 5.53 -92.71 -0.51 15.50 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.18 0.13 7.94 -2.91 -0.02 0.11 16 46 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 47 H 0.13 2.98 7.51 -2.91 -0.02 2.96 16 Total: -1.00 -79.70 395.91 4.63 -75.07 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.32 Total: 18.70 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.06 Total: -7.96 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.51 Total: -111.76 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.04 Total: -15.63 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.55 Total: -5.78 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -79.70 4.63 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.020 kcal (2) G-P(sol) polarization free energy of solvation -79.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds