Wall clock time and date at job start Tue Mar 31 2020 23:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46853 * 2 1 4 4 C 1.52998 * 109.47045 * 120.00267 * 2 1 3 5 5 C 1.53000 * 109.46615 * 184.99631 * 4 2 1 6 6 C 1.53005 * 109.46843 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47312 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00471 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99561 * 0.02562 * 8 7 6 10 10 C 1.38808 * 120.00283 * 179.97438 * 8 7 6 11 11 N 1.31616 * 119.99911 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99948 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47280 * 89.99457 * 12 10 8 14 14 H 1.48499 * 109.46851 * 209.99582 * 12 10 8 15 15 H 1.48503 * 109.47060 * 329.99446 * 12 10 8 16 16 N 1.46500 * 109.46781 * 240.00655 * 2 1 3 17 17 C 1.34769 * 120.00612 * 84.99827 * 16 2 1 18 18 O 1.21284 * 119.99943 * 359.97438 * 17 16 2 19 19 C 1.50700 * 120.00514 * 179.97438 * 17 16 2 20 20 H 1.08996 * 109.47377 * 300.00838 * 19 17 16 21 21 C 1.53008 * 109.46796 * 60.00407 * 19 17 16 22 22 C 1.50703 * 109.47341 * 180.02562 * 19 17 16 23 23 C 1.38262 * 119.96338 * 300.02299 * 22 19 17 24 24 C 1.38209 * 120.06589 * 179.97438 * 23 22 19 25 25 C 1.38411 * 120.00568 * 0.02562 * 24 23 22 26 26 F 1.35097 * 120.04187 * 180.02562 * 25 24 23 27 27 C 1.38656 * 119.92371 * 359.71630 * 25 24 23 28 28 F 1.35104 * 120.03237 * 180.29742 * 27 25 24 29 29 C 1.38212 * 119.96274 * 120.00577 * 22 19 17 30 30 H 1.08996 * 109.47382 * 59.99885 * 1 2 3 31 31 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46954 * 299.99594 * 1 2 3 33 33 H 1.08991 * 109.47591 * 304.99963 * 4 2 1 34 34 H 1.09001 * 109.47222 * 65.00317 * 4 2 1 35 35 H 1.08994 * 109.47816 * 300.00121 * 5 4 2 36 36 H 1.08999 * 109.47260 * 60.00560 * 5 4 2 37 37 H 1.09002 * 109.46904 * 300.00198 * 6 5 4 38 38 H 1.09001 * 109.47204 * 60.00557 * 6 5 4 39 39 H 0.97008 * 119.99569 * 359.97438 * 7 6 5 40 40 H 0.97006 * 119.99813 * 180.02562 * 11 10 8 41 41 H 0.97006 * 119.99854 * 264.99730 * 16 2 1 42 42 H 1.08997 * 109.47069 * 59.99608 * 21 19 17 43 43 H 1.08995 * 109.46795 * 180.02562 * 21 19 17 44 44 H 1.09001 * 109.46717 * 299.99968 * 21 19 17 45 45 H 1.07999 * 119.96365 * 359.97438 * 23 22 19 46 46 H 1.07998 * 119.99822 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99812 * 359.97109 * 29 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3135 6 6 4.0749 -1.3352 2.5624 7 7 5.5349 -1.2314 2.6244 8 6 6.2188 -1.8056 3.6626 9 1 5.6818 -2.3353 4.4355 10 6 7.6022 -1.7076 3.7210 11 7 8.2594 -2.2599 4.7186 12 14 8.5310 -0.7919 2.3837 13 1 8.6620 0.6380 2.7623 14 1 9.8819 -1.3873 2.2230 15 1 7.7874 -0.8987 1.1027 16 7 2.0183 -0.6905 -1.1963 17 6 2.1469 -0.0182 -2.3572 18 8 1.8581 1.1585 -2.4117 19 6 2.6497 -0.7283 -3.5876 20 1 3.6490 -1.1203 -3.3981 21 6 1.7060 -1.8825 -3.9316 22 6 2.7009 0.2402 -4.7410 23 6 1.5454 0.8693 -5.1662 24 6 1.5900 1.7584 -6.2235 25 6 2.7920 2.0193 -6.8582 26 9 2.8364 2.8886 -7.8914 27 6 3.9516 1.3924 -6.4283 28 9 5.1271 1.6501 -7.0424 29 6 3.9028 0.4988 -5.3725 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -0.2619 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.9994 -1.0728 0.4258 36 1 3.8532 0.4369 1.3572 37 1 3.6403 -0.8761 3.4504 38 1 3.7866 -2.3855 2.5182 39 1 6.0172 -0.7559 1.9299 40 1 9.2262 -2.1912 4.7596 41 1 2.2490 -1.6317 -1.1528 42 1 0.7067 -1.4907 -4.1211 43 1 2.0699 -2.3965 -4.8213 44 1 1.6695 -2.5829 -3.0972 45 1 0.6072 0.6658 -4.6716 46 1 0.6867 2.2489 -6.5550 47 1 4.8048 0.0073 -5.0389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277362380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:56 Heat of formation + Delta-G solvation = -129.442031 kcal Electronic energy + Delta-G solvation = -28926.814210 eV Core-core repulsion = 24551.318314 eV Total energy + Delta-G solvation = -4375.495896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.55454 -49.64085 -41.43189 -39.78161 -37.96031 -36.58361 -35.13993 -34.14894 -32.66868 -31.94730 -31.08674 -29.86390 -27.34912 -25.81154 -24.51085 -24.32703 -23.50922 -22.48236 -21.71383 -21.09005 -19.61921 -19.04829 -18.57375 -18.13754 -17.58461 -17.38585 -17.10529 -16.57811 -16.28918 -16.07027 -15.90936 -15.79848 -15.59468 -15.50195 -15.03464 -14.95573 -14.78775 -14.50151 -14.19437 -13.89171 -13.75626 -13.54491 -13.50444 -13.29443 -13.06946 -12.92357 -12.84317 -12.61521 -12.47614 -12.44310 -12.07427 -12.01462 -11.99911 -11.86030 -11.72279 -11.49772 -10.97362 -10.74251 -10.09467 -9.99924 -9.68612 -9.29680 -8.03916 -5.37190 -0.17762 -0.01994 1.36618 1.40425 1.47678 1.68861 2.10078 2.47291 2.48371 2.74876 3.23460 3.27767 3.37521 3.51535 3.54670 3.81781 3.92804 4.02645 4.08164 4.13523 4.18198 4.23545 4.26181 4.44156 4.59188 4.67546 4.69200 4.75617 4.81080 4.85387 4.89041 4.90792 4.93865 4.97020 5.02262 5.05103 5.16796 5.28728 5.35605 5.36711 5.39908 5.45495 5.64802 5.69368 5.75345 6.20807 6.62814 7.07595 7.31754 7.85052 8.02741 9.17636 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.002463 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.272165 B =11367.592041 C =13305.278636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.057 0.943 10 C -0.066 4.066 11 N -0.984 5.984 12 Si 0.956 3.044 13 H -0.282 1.282 14 H -0.294 1.294 15 H -0.249 1.249 16 N -0.710 5.710 17 C 0.517 3.483 18 O -0.573 6.573 19 C -0.070 4.070 20 H 0.127 0.873 21 C -0.139 4.139 22 C -0.049 4.049 23 C -0.066 4.066 24 C -0.123 4.123 25 C 0.047 3.953 26 F -0.141 7.141 27 C 0.044 3.956 28 F -0.142 7.142 29 C -0.119 4.119 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.021 0.979 38 H 0.030 0.970 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.414 0.586 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.150 0.850 46 H 0.166 0.834 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 2.381 -24.702 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.155 4.155 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.367 4.367 9 H 0.075 0.925 10 C -0.258 4.258 11 N -0.635 5.635 12 Si 0.783 3.217 13 H -0.208 1.208 14 H -0.221 1.221 15 H -0.174 1.174 16 N -0.363 5.363 17 C 0.304 3.696 18 O -0.452 6.452 19 C -0.091 4.091 20 H 0.145 0.855 21 C -0.196 4.196 22 C -0.050 4.050 23 C -0.084 4.084 24 C -0.141 4.141 25 C 0.027 3.973 26 F -0.120 7.120 27 C 0.025 3.975 28 F -0.121 7.121 29 C -0.138 4.138 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.168 0.832 46 H 0.184 0.816 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.967 3.132 -24.588 32.466 hybrid contribution 1.633 0.548 -0.546 1.807 sum -19.334 3.680 -25.134 31.923 Atomic orbital electron populations 1.22085 0.93967 1.02997 1.02203 1.20913 0.94657 0.96492 0.83871 0.91764 1.21754 0.93570 1.02390 0.97309 1.21661 0.96700 0.99977 0.97158 1.20866 0.81968 0.97958 0.96697 1.42802 1.03856 1.66690 1.27489 1.19072 0.90181 1.26358 1.01082 0.92513 1.25542 0.97347 1.02253 1.00619 1.69887 1.07512 1.51599 1.34476 0.85395 0.77887 0.78191 0.80209 1.20806 1.22099 1.17388 1.46031 1.66564 1.14720 1.08953 1.20747 0.76915 0.86812 0.85132 1.90725 1.51493 1.17491 1.85522 1.20387 1.04261 0.95405 0.89042 0.85472 1.21850 0.98266 0.95441 1.04071 1.19439 0.92308 0.97418 0.95843 1.21077 0.99408 0.93915 0.93984 1.21294 0.96521 0.99756 0.96564 1.17987 0.94782 0.94503 0.90061 1.91491 1.97221 1.67240 1.56054 1.17873 0.80494 1.01832 0.97349 1.91497 1.45288 1.93219 1.82074 1.21157 1.00359 0.97705 0.94542 0.93451 0.90842 0.90980 0.89577 0.89256 0.91377 0.92977 0.96114 0.95200 0.80244 0.93321 0.74917 0.91557 0.89913 0.89623 0.83225 0.81606 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.48 71.98 0.68 -1.38 16 2 C 0.15 2.35 2.57 44.99 0.12 2.47 16 3 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 4 C -0.11 -1.87 4.75 30.59 0.15 -1.72 16 5 C -0.12 -2.89 5.22 30.60 0.16 -2.73 16 6 C 0.15 5.27 6.26 86.38 0.54 5.81 16 7 N -0.76 -35.01 5.41 -343.44 -1.86 -36.87 16 8 C -0.24 -13.44 10.47 84.03 0.88 -12.56 16 9 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 10 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 11 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 12 Si 0.96 45.36 27.74 68.60 1.90 47.27 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 15 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 16 N -0.71 -9.64 4.42 -442.55 -1.96 -11.60 16 17 C 0.52 8.66 6.99 87.66 0.61 9.28 16 18 O -0.57 -14.34 14.77 -3.04 -0.04 -14.38 16 19 C -0.07 -0.76 2.90 -12.28 -0.04 -0.80 16 20 H 0.13 1.03 7.87 -2.39 -0.02 1.01 16 21 C -0.14 -0.78 8.90 71.98 0.64 -0.14 16 22 C -0.05 -0.73 4.40 -19.86 -0.09 -0.82 16 23 C -0.07 -0.96 7.92 22.27 0.18 -0.78 16 24 C -0.12 -1.89 10.02 22.30 0.22 -1.66 16 25 C 0.05 0.94 7.31 22.41 0.16 1.10 16 26 F -0.14 -3.18 17.18 44.97 0.77 -2.41 16 27 C 0.04 0.92 7.31 22.41 0.16 1.09 16 28 F -0.14 -3.36 17.18 44.97 0.77 -2.59 16 29 C -0.12 -1.96 9.65 22.30 0.22 -1.75 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.59 7.75 -2.39 -0.02 1.57 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.36 15.99 5.53 -92.70 -0.51 15.47 16 40 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 41 H 0.41 3.60 8.02 -92.70 -0.74 2.86 16 42 H 0.07 0.38 7.39 -2.39 -0.02 0.37 16 43 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 0.24 7.56 -2.39 -0.02 0.22 16 45 H 0.15 1.78 7.51 -2.91 -0.02 1.76 16 46 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.16 2.04 7.94 -2.91 -0.02 2.02 16 Total: -1.00 -76.61 395.93 4.63 -71.98 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.32 Total: 19.48 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.06 Total: -8.05 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.51 Total: -111.31 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.04 Total: -14.38 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 1.55 Total: -5.00 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Total: -76.61 4.63 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.462 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds