Wall clock time and date at job start Wed Apr 1 2020 00:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.46989 * 2 1 4 4 C 1.36942 * 119.99754 * 264.28694 * 3 2 1 5 5 H 1.08001 * 120.00063 * 188.63730 * 4 3 2 6 6 C 1.38808 * 119.99811 * 8.64143 * 4 3 2 7 7 N 1.31620 * 120.00511 * 24.60440 * 6 4 3 8 8 Si 1.86804 * 119.99928 * 204.60246 * 6 4 3 9 9 H 1.48495 * 109.47315 * 85.02547 * 8 6 4 10 10 H 1.48500 * 109.46994 * 205.02590 * 8 6 4 11 11 H 1.48502 * 109.47060 * 325.02561 * 8 6 4 12 12 C 1.46495 * 120.00525 * 84.28812 * 3 2 1 13 13 C 1.52996 * 109.47257 * 270.00196 * 12 3 2 14 14 C 1.53006 * 109.47111 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46968 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99832 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99736 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00209 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.47090 * 59.99581 * 18 16 15 20 20 C 1.53004 * 109.47085 * 300.00094 * 18 16 15 21 21 C 1.50700 * 109.47448 * 180.02562 * 18 16 15 22 22 C 1.38422 * 120.02411 * 239.99894 * 21 18 16 23 23 F 1.35099 * 120.01284 * 359.97438 * 22 21 18 24 24 C 1.38467 * 119.97239 * 179.97438 * 22 21 18 25 25 C 1.38215 * 120.02720 * 0.27000 * 24 22 21 26 26 C 1.38209 * 120.04419 * 359.45081 * 25 24 22 27 27 C 1.38411 * 120.02462 * 59.97473 * 21 18 16 28 28 F 1.35109 * 120.01543 * 0.02562 * 27 21 18 29 29 H 1.08991 * 109.47072 * 60.00096 * 1 2 3 30 30 H 1.09000 * 109.46730 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46947 * 300.00204 * 1 2 3 32 32 H 1.08998 * 109.46947 * 239.99796 * 2 1 3 33 33 H 1.08999 * 109.46770 * 119.99754 * 2 1 3 34 34 H 0.96994 * 120.00781 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47528 * 149.99773 * 12 3 2 36 36 H 1.09009 * 109.46623 * 29.99940 * 12 3 2 37 37 H 1.08994 * 109.47247 * 59.99607 * 13 12 3 38 38 H 1.08995 * 109.47016 * 299.99471 * 13 12 3 39 39 H 1.08994 * 109.47359 * 59.99709 * 14 13 12 40 40 H 1.09003 * 109.47002 * 299.99397 * 14 13 12 41 41 H 0.96999 * 120.00123 * 0.02562 * 15 14 13 42 42 H 1.08995 * 109.47680 * 179.97438 * 20 18 16 43 43 H 1.08998 * 109.47259 * 300.00200 * 20 18 16 44 44 H 1.09003 * 109.47076 * 59.99855 * 20 18 16 45 45 H 1.08001 * 119.98582 * 180.02562 * 24 22 21 46 46 H 1.08001 * 119.97439 * 179.71067 * 25 24 22 47 47 H 1.08006 * 119.98005 * 180.24964 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9873 -1.1801 5 1 2.8471 2.9502 -1.1714 6 6 2.0732 1.3643 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0771 1.7729 -3.9088 9 1 4.3047 0.9376 -3.9309 10 1 2.2689 1.4973 -5.1238 11 1 3.4557 3.2085 -3.8812 12 6 2.1435 2.1140 1.2623 13 6 0.8339 2.8474 1.5583 14 6 0.9644 3.6123 2.8770 15 7 -0.2895 4.3151 3.1600 16 6 -0.4076 5.0588 4.2778 17 8 0.5240 5.1458 5.0495 18 6 -1.6975 5.7813 4.5693 19 1 -2.5094 5.0582 4.6471 20 6 -1.9980 6.7655 3.4370 21 6 -1.5690 6.5347 5.8681 22 6 -2.4205 6.2495 6.9215 23 9 -3.3676 5.2958 6.7856 24 6 -2.3010 6.9420 8.1146 25 6 -1.3357 7.9216 8.2521 26 6 -0.4813 8.2032 7.2029 27 6 -0.5990 7.5121 6.0088 28 9 0.2328 7.7916 4.9814 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.8972 0.0500 -3.3037 35 1 2.9553 2.8372 1.1838 36 1 2.3580 1.4133 2.0694 37 1 0.0222 2.1243 1.6368 38 1 0.6195 3.5480 0.7513 39 1 1.7762 4.3354 2.7989 40 1 1.1785 2.9113 3.6839 41 1 -1.0349 4.2446 2.5434 42 1 -2.9312 7.2878 3.6475 43 1 -1.1861 7.4886 3.3591 44 1 -2.0908 6.2209 2.4974 45 1 -2.9650 6.7193 8.9368 46 1 -1.2464 8.4645 9.1814 47 1 0.2753 8.9661 7.3128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316899055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:43 Heat of formation + Delta-G solvation = -81.622156 kcal Electronic energy + Delta-G solvation = -29577.376279 eV Core-core repulsion = 25203.954008 eV Total energy + Delta-G solvation = -4373.422271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.33690 -49.15162 -40.13328 -38.80509 -36.57912 -34.92022 -34.57859 -32.05129 -30.60498 -30.49634 -29.75590 -28.75902 -25.67867 -24.76800 -23.44970 -23.16766 -22.30962 -21.09715 -20.38168 -19.78363 -18.41808 -17.90003 -17.00037 -16.73754 -16.40873 -16.04025 -15.82676 -15.60914 -15.52967 -15.40152 -14.86355 -14.68115 -14.41946 -14.04657 -13.82159 -13.49193 -13.16657 -13.05547 -12.79756 -12.65758 -12.53108 -12.41846 -12.22187 -11.88830 -11.81621 -11.60043 -11.40389 -11.31237 -11.18484 -10.85551 -10.70778 -10.39015 -10.30931 -9.86820 -9.74810 -9.56363 -9.33092 -9.19352 -9.02828 -8.92132 -8.34407 -6.88257 -5.75529 -3.06463 0.62453 0.69187 2.64091 2.95460 3.30932 3.40437 3.47947 3.48742 3.60291 3.98589 4.10933 4.30323 4.43936 4.51561 4.71713 4.78982 4.83610 4.94512 5.24972 5.33419 5.35911 5.42205 5.45037 5.51857 5.57774 5.63984 5.70006 5.81070 5.81394 5.86976 5.91043 6.12565 6.22553 6.42234 6.43959 6.57603 6.63637 6.77005 6.88861 6.94567 7.12409 7.19276 7.55850 7.68285 7.78803 8.10485 8.24105 8.38158 9.25971 9.89165 10.34149 11.28402 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.002151 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.581464 B =13014.031585 C =13511.952082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.598 5.598 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.154 4.154 14 C 0.120 3.880 15 N -0.721 5.721 16 C 0.517 3.483 17 O -0.536 6.536 18 C -0.074 4.074 19 H 0.113 0.887 20 C -0.148 4.148 21 C -0.139 4.139 22 C 0.135 3.865 23 F -0.130 7.130 24 C -0.169 4.169 25 C -0.062 4.062 26 C -0.168 4.168 27 C 0.164 3.836 28 F -0.120 7.120 29 H 0.090 0.910 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 14.245 19.920 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.544 5.544 8 Si 0.726 3.274 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.195 4.195 14 C -0.003 4.003 15 N -0.372 5.372 16 C 0.302 3.698 17 O -0.412 6.412 18 C -0.095 4.095 19 H 0.131 0.869 20 C -0.205 4.205 21 C -0.141 4.141 22 C 0.115 3.885 23 F -0.108 7.108 24 C -0.188 4.188 25 C -0.080 4.080 26 C -0.187 4.187 27 C 0.144 3.856 28 F -0.099 7.099 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.803 14.159 20.246 26.227 hybrid contribution -0.105 -0.037 -1.338 1.342 sum -8.907 14.122 18.908 25.225 Atomic orbital electron populations 1.22414 0.99397 0.98133 1.00989 1.20803 0.92450 0.84518 0.98157 1.44261 1.75758 1.10229 1.01600 1.19285 1.31141 1.03579 0.83586 0.90907 1.24716 0.98020 1.00103 0.97298 1.70148 1.27348 1.32000 1.24856 0.86384 0.80364 0.77824 0.82787 1.21649 1.22029 1.20808 1.20665 0.93646 0.94149 0.88726 1.22717 1.02877 0.99701 0.94226 1.21523 0.85129 0.95318 0.98360 1.46089 1.17637 1.49863 1.23658 1.20226 0.88928 0.79206 0.81469 1.90703 1.40489 1.62582 1.47457 1.20190 0.98127 0.98153 0.93035 0.86918 1.21873 1.03066 0.99053 0.96520 1.19370 0.98476 0.99936 0.96296 1.17153 0.88422 0.88972 0.93947 1.91514 1.61738 1.61417 1.96169 1.21137 1.02065 0.98722 0.96857 1.20834 0.92940 0.95721 0.98499 1.21216 1.02555 1.02689 0.92283 1.17088 0.88489 0.94643 0.85358 1.91532 1.69275 1.92121 1.56933 0.89164 0.96333 0.96851 0.89499 0.97989 0.93865 0.93547 0.94245 0.91609 0.91435 0.91786 0.91981 0.76512 0.91156 0.91027 0.90874 0.84008 0.83943 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.58 37.16 0.36 -3.04 16 2 C 0.17 3.97 5.64 -4.04 -0.02 3.94 16 3 N -0.60 -14.47 2.54 -173.24 -0.44 -14.91 16 4 C -0.25 -6.56 9.70 -15.06 -0.15 -6.70 16 5 H 0.07 1.91 7.93 -52.49 -0.42 1.50 16 6 C 0.00 -0.12 4.91 -17.43 -0.09 -0.21 16 7 N -0.90 -24.73 8.54 55.49 0.47 -24.26 16 8 Si 0.90 21.43 29.62 -169.99 -5.03 16.40 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.16 3.11 5.71 -4.05 -0.02 3.08 16 13 C -0.15 -2.67 5.53 -26.73 -0.15 -2.82 16 14 C 0.12 1.83 5.67 -4.04 -0.02 1.81 16 15 N -0.72 -9.70 5.45 -60.29 -0.33 -10.02 16 16 C 0.52 7.35 6.59 -10.99 -0.07 7.27 16 17 O -0.54 -9.46 14.56 5.56 0.08 -9.38 16 18 C -0.07 -0.81 2.79 -92.92 -0.26 -1.07 16 19 H 0.11 1.10 7.13 -51.93 -0.37 0.73 16 20 C -0.15 -1.35 8.88 37.16 0.33 -1.02 16 21 C -0.14 -1.57 4.40 -104.49 -0.46 -2.03 16 22 C 0.13 1.36 7.25 -39.43 -0.29 1.07 16 23 F -0.13 -1.36 16.19 2.25 0.04 -1.32 16 24 C -0.17 -1.30 10.02 -39.51 -0.40 -1.70 16 25 C -0.06 -0.42 10.04 -39.60 -0.40 -0.82 16 26 C -0.17 -1.45 10.02 -39.51 -0.40 -1.85 16 27 C 0.16 1.88 6.13 -39.43 -0.24 1.64 16 28 F -0.12 -1.60 13.81 2.25 0.03 -1.56 16 29 H 0.09 2.32 6.28 -51.93 -0.33 1.99 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.01 0.27 5.98 -51.93 -0.31 -0.04 16 32 H 0.09 2.32 5.87 -51.93 -0.31 2.01 16 33 H 0.00 0.04 7.97 -51.93 -0.41 -0.37 16 34 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.04 0.73 7.95 -51.92 -0.41 0.32 16 37 H 0.07 1.18 5.93 -51.93 -0.31 0.87 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.40 4.53 7.89 -40.82 -0.32 4.21 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.74 6.31 -51.93 -0.33 0.41 16 44 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 47 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -31.02 382.94 -8.52 -39.54 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.84 Total: 2.18 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.27 Total: -2.43 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.29 Total: -49.19 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.07 Total: -2.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.02 -8.52 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316899055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.082 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds