Wall clock time and date at job start Wed Apr 1 2020 00:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.46855 * 2 1 4 4 C 1.36939 * 120.00035 * 275.30114 * 3 2 1 5 5 H 1.08003 * 119.99306 * 37.58851 * 4 3 2 6 6 C 1.38803 * 120.00392 * 217.58772 * 4 3 2 7 7 N 1.31618 * 119.99917 * 21.42370 * 6 4 3 8 8 Si 1.86801 * 120.00246 * 201.42814 * 6 4 3 9 9 H 1.48506 * 109.47076 * 59.99663 * 8 6 4 10 10 H 1.48495 * 109.47443 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46976 * 299.99994 * 8 6 4 12 12 C 1.46495 * 119.99845 * 95.31585 * 3 2 1 13 13 C 1.53007 * 109.46889 * 269.98919 * 12 3 2 14 14 C 1.53002 * 109.47329 * 180.02562 * 13 12 3 15 15 N 1.46498 * 109.47115 * 180.02562 * 14 13 12 16 16 C 1.34766 * 120.00164 * 179.72522 * 15 14 13 17 17 O 1.21285 * 119.99760 * 0.27340 * 16 15 14 18 18 C 1.50697 * 120.00273 * 180.27528 * 16 15 14 19 19 H 1.08994 * 109.47451 * 300.00080 * 18 16 15 20 20 C 1.53001 * 109.47284 * 60.00126 * 18 16 15 21 21 C 1.50707 * 109.47146 * 179.97438 * 18 16 15 22 22 C 1.38414 * 120.02553 * 299.72358 * 21 18 16 23 23 F 1.35100 * 120.01550 * 0.02562 * 22 21 18 24 24 C 1.38479 * 119.97262 * 179.74381 * 22 21 18 25 25 C 1.38215 * 120.02045 * 0.53544 * 24 22 21 26 26 C 1.38204 * 120.05287 * 359.73873 * 25 24 22 27 27 C 1.38423 * 120.01778 * 119.99983 * 21 18 16 28 28 F 1.35093 * 120.02124 * 0.02562 * 27 21 18 29 29 H 1.09004 * 109.46914 * 300.00447 * 1 2 3 30 30 H 1.08999 * 109.46800 * 60.00011 * 1 2 3 31 31 H 1.08999 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46798 * 239.99476 * 2 1 3 33 33 H 1.08999 * 109.46800 * 119.99989 * 2 1 3 34 34 H 0.97003 * 120.00026 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47243 * 149.99934 * 12 3 2 36 36 H 1.08994 * 109.47787 * 29.98925 * 12 3 2 37 37 H 1.09007 * 109.46479 * 60.00043 * 13 12 3 38 38 H 1.08999 * 109.47052 * 300.00988 * 13 12 3 39 39 H 1.08997 * 109.46721 * 60.00199 * 14 13 12 40 40 H 1.09001 * 109.46863 * 300.00321 * 14 13 12 41 41 H 0.97005 * 119.99568 * 0.02562 * 15 14 13 42 42 H 1.09003 * 109.47171 * 59.99480 * 20 18 16 43 43 H 1.09001 * 109.47717 * 179.97438 * 20 18 16 44 44 H 1.09004 * 109.46850 * 300.00406 * 20 18 16 45 45 H 1.07997 * 119.98749 * 180.27350 * 24 22 21 46 46 H 1.08002 * 119.97058 * 179.76551 * 25 24 22 47 47 H 1.08002 * 119.98654 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0997 4.2793 -2.6586 9 1 1.9630 5.1785 -2.3345 10 1 4.3621 5.0612 -2.6662 11 1 2.8847 3.6723 -3.9967 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5134 3.4192 3.1556 15 7 0.3350 4.0944 3.7047 16 6 0.4234 4.7610 4.8726 17 8 1.4799 4.8062 5.4666 18 6 -0.7904 5.4503 5.4406 19 1 -1.1452 6.2014 4.7350 20 6 -1.8941 4.4196 5.6861 21 6 -0.4267 6.1159 6.7429 22 6 0.0462 5.3576 7.7999 23 9 0.1825 4.0203 7.6645 24 6 0.3851 5.9710 8.9943 25 6 0.2408 7.3384 9.1347 26 6 -0.2366 8.0957 8.0819 27 6 -0.5707 7.4853 6.8847 28 9 -1.0379 8.2258 5.8559 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7830 35 1 3.1617 2.7641 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3542 2.0069 2.0138 38 1 0.7904 3.4876 1.1276 39 1 2.3018 4.1507 2.9778 40 1 1.8659 2.6701 3.8646 41 1 -0.5101 4.0579 3.2298 42 1 -1.5393 3.6684 6.3918 43 1 -2.7719 4.9180 6.0974 44 1 -2.1572 3.9377 4.7444 45 1 0.7583 5.3801 9.8177 46 1 0.5018 7.8154 10.0679 47 1 -0.3494 9.1641 8.1929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316899058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:45 Heat of formation + Delta-G solvation = -93.329322 kcal Electronic energy + Delta-G solvation = -29722.562494 eV Core-core repulsion = 25348.632562 eV Total energy + Delta-G solvation = -4373.929932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.29593 -49.12273 -40.06571 -38.74905 -36.44766 -34.77423 -34.53263 -31.85510 -31.27858 -30.56296 -29.74758 -28.45306 -25.65402 -24.76667 -23.65466 -23.13467 -22.30342 -21.02915 -20.34463 -19.76105 -18.38042 -17.85459 -16.93179 -16.68782 -16.30509 -15.99322 -15.78779 -15.55022 -15.46135 -15.29176 -14.88952 -14.64748 -14.28795 -14.07194 -13.87720 -13.46822 -13.40279 -13.01981 -12.84582 -12.61845 -12.44751 -12.39422 -12.35122 -12.18423 -11.77878 -11.58444 -11.43246 -11.19220 -11.10843 -11.00652 -10.73067 -10.56384 -10.47433 -10.04535 -9.77790 -9.62178 -9.52585 -9.14803 -8.98995 -8.81993 -8.46003 -6.55458 -5.77579 -3.36923 0.66453 0.72901 2.72108 2.99923 3.35457 3.39376 3.43400 3.44460 3.64395 4.02277 4.14796 4.34538 4.47472 4.48177 4.76353 4.82670 4.86624 4.98722 5.25694 5.32587 5.41545 5.44231 5.48051 5.61136 5.67020 5.68169 5.72564 5.84683 5.86105 5.88228 5.99804 6.10044 6.29931 6.36579 6.44188 6.47671 6.49181 6.59658 6.76145 6.79903 6.91990 7.10456 7.18657 7.64477 7.69118 7.82970 8.32834 8.53501 9.20775 9.83160 10.42127 11.21891 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.002518 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.008636 B =11117.643123 C =11907.221841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.721 5.721 16 C 0.515 3.485 17 O -0.534 6.534 18 C -0.074 4.074 19 H 0.113 0.887 20 C -0.147 4.147 21 C -0.138 4.138 22 C 0.164 3.836 23 F -0.121 7.121 24 C -0.168 4.168 25 C -0.062 4.062 26 C -0.169 4.169 27 C 0.135 3.865 28 F -0.130 7.130 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.398 0.602 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 7.572 19.639 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.372 5.372 16 C 0.300 3.700 17 O -0.411 6.411 18 C -0.095 4.095 19 H 0.131 0.869 20 C -0.204 4.204 21 C -0.140 4.140 22 C 0.144 3.856 23 F -0.099 7.099 24 C -0.187 4.187 25 C -0.080 4.080 26 C -0.188 4.188 27 C 0.115 3.885 28 F -0.108 7.108 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.232 0.768 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.160 7.623 19.974 24.595 hybrid contribution -0.512 0.727 -1.179 1.477 sum -12.672 8.350 18.795 24.157 Atomic orbital electron populations 1.22372 1.00194 0.98872 1.01087 1.20846 0.91658 0.87406 0.98710 1.43738 1.76068 1.08179 1.02491 1.18930 1.04648 1.21333 0.94174 0.92393 1.25186 0.94207 1.01289 0.98061 1.69990 1.03171 1.37290 1.42369 0.86493 0.76935 0.82407 0.81672 1.20933 1.21592 1.20724 1.20789 0.94429 0.96633 0.85742 1.22540 1.02382 0.99861 0.93877 1.21492 0.86992 0.96099 0.95616 1.46096 1.14581 1.53702 1.22819 1.20206 0.89505 0.79028 0.81248 1.90713 1.30028 1.60626 1.59687 1.20192 0.95867 0.99144 0.94332 0.86949 1.21865 0.96828 0.98229 1.03489 1.19373 1.06057 0.92477 0.96121 1.17084 0.97362 0.77796 0.93372 1.91523 1.92805 1.29429 1.96132 1.21212 1.04317 0.95947 0.97246 1.20829 0.96020 0.92556 0.98616 1.21136 1.03926 1.01486 0.92215 1.17158 0.98379 0.87621 0.85342 1.91513 1.85825 1.76180 1.57308 0.93823 0.93277 0.94640 0.93896 0.94852 0.93450 0.88766 0.95690 0.93049 0.91727 0.91531 0.91961 0.76754 0.91045 0.91217 0.90988 0.83998 0.83954 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.21 37.16 0.38 -2.58 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.27 2.43 -173.24 -0.42 -14.70 16 4 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 5 H 0.06 1.56 7.92 -52.48 -0.42 1.15 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.41 11.47 55.49 0.64 -24.78 16 8 Si 0.90 21.45 29.60 -169.99 -5.03 16.42 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.45 5.33 -4.04 -0.02 3.42 16 13 C -0.15 -2.72 5.65 -26.73 -0.15 -2.87 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 N -0.72 -10.39 5.45 -60.30 -0.33 -10.72 16 16 C 0.52 7.82 6.60 -10.99 -0.07 7.75 16 17 O -0.53 -10.10 14.59 5.55 0.08 -10.02 16 18 C -0.07 -0.86 2.79 -92.92 -0.26 -1.12 16 19 H 0.11 1.17 7.13 -51.93 -0.37 0.80 16 20 C -0.15 -1.35 8.87 37.16 0.33 -1.02 16 21 C -0.14 -1.65 4.40 -104.49 -0.46 -2.11 16 22 C 0.16 1.95 6.14 -39.43 -0.24 1.71 16 23 F -0.12 -1.64 13.81 2.25 0.03 -1.61 16 24 C -0.17 -1.53 10.03 -39.50 -0.40 -1.93 16 25 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 26 C -0.17 -1.40 10.02 -39.51 -0.40 -1.80 16 27 C 0.13 1.45 7.25 -39.43 -0.29 1.16 16 28 F -0.13 -1.45 16.19 2.25 0.04 -1.41 16 29 H 0.04 0.75 6.64 -51.93 -0.34 0.41 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 35 H 0.09 2.46 5.52 -51.93 -0.29 2.18 16 36 H 0.02 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.05 0.89 6.64 -51.92 -0.34 0.55 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.40 4.68 7.89 -40.82 -0.32 4.36 16 42 H 0.07 0.73 6.29 -51.93 -0.33 0.41 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 45 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -31.98 389.42 -8.36 -40.33 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.98 Total: 2.74 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.25 Total: -2.13 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.11 Total: -50.19 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.98 -8.36 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316899058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.995 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds