Wall clock time and date at job start Tue Mar 31 2020 23:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.52995 * 109.47435 * 120.00111 * 2 1 3 5 5 O 1.42906 * 109.47024 * 55.00251 * 4 2 1 6 6 C 1.42894 * 113.99974 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.75505 * 32.01112 * 6 5 4 8 8 C 1.55302 * 110.84892 * 155.71417 * 6 5 4 9 9 C 1.54949 * 100.94264 * 152.32226 * 8 6 5 10 10 O 1.43646 * 105.13502 * 323.55347 * 9 8 6 11 11 C 1.43233 * 109.97190 * 24.42591 * 10 9 8 12 12 N 1.46504 * 109.47092 * 240.00148 * 2 1 3 13 13 C 1.34779 * 119.99771 * 85.00001 * 12 2 1 14 14 O 1.21345 * 120.00263 * 359.97438 * 13 12 2 15 15 C 1.49457 * 119.99809 * 180.02562 * 13 12 2 16 16 O 1.21340 * 119.99864 * 5.08623 * 15 13 12 17 17 N 1.34773 * 119.99770 * 185.08971 * 15 13 12 18 18 C 1.46499 * 120.00072 * 185.00703 * 17 15 13 19 19 C 1.53000 * 109.47568 * 184.77088 * 18 17 15 20 20 C 1.50699 * 115.55169 * 294.82822 * 19 18 17 21 21 H 1.07996 * 120.00355 * 99.44295 * 20 19 18 22 22 C 1.37874 * 119.99684 * 279.43992 * 20 19 18 23 23 N 1.31523 * 120.00135 * 5.14854 * 22 20 19 24 24 Si 1.86801 * 120.00109 * 185.14981 * 22 20 19 25 25 H 1.48502 * 109.47011 * 270.00159 * 24 22 20 26 26 H 1.48502 * 109.47012 * 29.99917 * 24 22 20 27 27 H 1.48495 * 109.47305 * 149.99978 * 24 22 20 28 28 C 1.53007 * 117.51310 * 80.52608 * 19 18 17 29 29 C 1.53002 * 59.99998 * 107.48119 * 28 19 18 30 30 H 1.08993 * 109.46899 * 299.99418 * 1 2 3 31 31 H 1.08997 * 109.46955 * 60.00170 * 1 2 3 32 32 H 1.08998 * 109.46518 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47300 * 175.00098 * 4 2 1 34 34 H 1.08997 * 109.46943 * 295.00110 * 4 2 1 35 35 H 1.09004 * 111.12556 * 270.23828 * 8 6 5 36 36 H 1.09003 * 111.12812 * 34.39829 * 8 6 5 37 37 H 1.09006 * 110.30890 * 204.64113 * 9 8 6 38 38 H 1.08996 * 110.30952 * 82.46907 * 9 8 6 39 39 H 1.08997 * 109.83898 * 238.77386 * 11 10 9 40 40 H 1.09008 * 109.83196 * 117.80042 * 11 10 9 41 41 H 0.96995 * 120.00114 * 264.99443 * 12 2 1 42 42 H 0.97002 * 120.00399 * 5.00826 * 17 15 13 43 43 H 1.09007 * 109.46807 * 64.77149 * 18 17 15 44 44 H 1.08994 * 109.47371 * 304.77867 * 18 17 15 45 45 H 0.97000 * 119.99622 * 174.99957 * 23 22 20 46 46 H 1.09002 * 117.49349 * 214.97184 * 28 19 18 47 47 H 1.09000 * 117.49979 * 359.97438 * 28 19 18 48 48 H 1.08996 * 117.49484 * 252.50633 * 29 28 19 49 49 H 1.09002 * 117.49449 * 107.48670 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.4704 -2.0304 1.3093 6 6 1.8838 -2.7926 2.4451 7 1 2.0667 -2.1425 3.3007 8 6 0.8348 -3.8849 2.7894 9 6 1.7331 -4.9542 3.4605 10 8 2.9702 -4.9162 2.7313 11 6 3.1362 -3.6333 2.1163 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8580 1.1591 -2.4117 15 6 2.6447 -0.7228 -3.5776 16 8 2.8450 -1.9192 -3.5482 17 7 2.8710 -0.0293 -4.7109 18 6 3.2530 -0.7342 -5.9371 19 6 3.5641 0.2847 -7.0353 20 6 2.3979 1.1211 -7.4952 21 1 2.2709 2.1248 -7.1174 22 6 1.4932 0.6049 -8.3984 23 7 1.5891 -0.6497 -8.7813 24 14 0.1311 1.6874 -9.0784 25 1 -1.0639 1.5881 -8.2024 26 1 0.5955 3.0971 -9.1243 27 1 -0.2212 1.2374 -10.4490 28 6 4.9437 0.9461 -7.0156 29 6 4.6126 -0.1013 -8.0806 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1264 -0.7994 1.2055 34 1 1.7517 -0.1583 2.1369 35 1 0.0875 -3.5060 3.4866 36 1 0.3648 -4.2765 1.8872 37 1 1.2749 -5.9398 3.3769 38 1 1.9031 -4.7027 4.5073 39 1 3.2302 -3.7500 1.0367 40 1 4.0250 -3.1442 2.5152 41 1 2.2491 -1.6317 -1.1527 42 1 2.7811 0.9365 -4.7147 43 1 2.4321 -1.3754 -6.2583 44 1 4.1364 -1.3434 -5.7458 45 1 0.9114 -1.0334 -9.3597 46 1 5.0077 1.9862 -7.3354 47 1 5.6298 0.6557 -6.2200 48 1 5.0809 -1.0809 -7.9857 49 1 4.4588 0.2497 -9.1010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323630267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:52 Heat of formation + Delta-G solvation = -161.854508 kcal Electronic energy + Delta-G solvation = -29756.622109 eV Core-core repulsion = 25490.808217 eV Total energy + Delta-G solvation = -4265.813891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71223 -40.66716 -39.82614 -38.57707 -38.44947 -36.45191 -34.98441 -34.00815 -32.67624 -31.75162 -29.69541 -28.70471 -27.55392 -27.38988 -25.12398 -23.50217 -22.97568 -22.52769 -21.97300 -21.40592 -21.20339 -19.57690 -18.46483 -18.05684 -17.90159 -17.53962 -17.08626 -16.90202 -16.57570 -16.30878 -16.23699 -16.01602 -15.71997 -15.31237 -15.16081 -14.88470 -14.74687 -14.43528 -14.20861 -14.08421 -13.65129 -13.53065 -13.36029 -13.20604 -12.95699 -12.86825 -12.85775 -12.61958 -12.54925 -12.38877 -12.35893 -12.04634 -12.01186 -11.67865 -11.51643 -10.89068 -10.75689 -10.63312 -10.51039 -10.49477 -10.33793 -10.12928 -9.95744 -8.12135 -6.24834 0.38803 1.38537 1.41001 1.43639 1.51930 2.17737 2.39316 2.41566 2.73014 3.00715 3.16147 3.42177 3.44305 3.59276 3.70996 3.88588 3.99791 4.02431 4.17606 4.19546 4.28192 4.39198 4.44339 4.51370 4.54393 4.62637 4.67983 4.69186 4.73869 4.77113 4.82397 4.92242 4.94176 4.94410 4.99972 5.06931 5.24115 5.25469 5.35034 5.37636 5.53809 5.62573 5.76669 5.97183 6.00453 6.14947 6.34826 6.46790 6.78231 6.82968 7.01901 7.44852 8.95272 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002204 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.410449 B =12698.425971 C =13232.191061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.108 0.892 4 C 0.055 3.945 5 O -0.382 6.382 6 C 0.059 3.941 7 H 0.106 0.894 8 C -0.150 4.150 9 C 0.045 3.955 10 O -0.408 6.408 11 C 0.021 3.979 12 N -0.683 5.683 13 C 0.516 3.484 14 O -0.538 6.538 15 C 0.493 3.507 16 O -0.559 6.559 17 N -0.668 5.668 18 C 0.174 3.826 19 C 0.001 3.999 20 C -0.507 4.507 21 H 0.059 0.941 22 C 0.027 3.973 23 N -0.905 5.905 24 Si 0.947 3.053 25 H -0.281 1.281 26 H -0.266 1.266 27 H -0.286 1.286 28 C -0.178 4.178 29 C -0.156 4.156 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.417 0.583 42 H 0.415 0.585 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.260 0.740 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -2.110 27.504 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.126 0.874 4 C -0.022 4.022 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.124 0.876 8 C -0.187 4.187 9 C -0.030 4.030 10 O -0.328 6.328 11 C -0.056 4.056 12 N -0.337 5.337 13 C 0.296 3.704 14 O -0.416 6.416 15 C 0.273 3.727 16 O -0.439 6.439 17 N -0.318 5.318 18 C 0.051 3.949 19 C 0.000 4.000 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.174 4.174 23 N -0.542 5.542 24 Si 0.773 3.227 25 H -0.207 1.207 26 H -0.190 1.190 27 H -0.212 1.212 28 C -0.215 4.215 29 C -0.195 4.195 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.254 0.746 42 H 0.251 0.749 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.014 -2.458 27.147 27.258 hybrid contribution -0.752 0.384 -0.945 1.267 sum -0.766 -2.074 26.201 26.295 Atomic orbital electron populations 1.22050 0.94027 1.02775 1.02587 1.21410 0.95640 0.97150 0.82146 0.87441 1.22980 0.98164 0.83737 0.97306 1.87970 1.69661 1.26874 1.45581 1.23775 0.93372 0.93439 0.89280 0.87610 1.23318 0.98282 0.94883 1.02257 1.23556 0.83001 1.00425 0.96042 1.88417 1.41377 1.33726 1.69315 1.23761 0.99127 0.84147 0.98522 1.45849 1.64331 1.15183 1.08328 1.19964 0.79010 0.86587 0.84798 1.90741 1.49955 1.15996 1.84866 1.20441 0.79672 0.87240 0.85331 1.90700 1.52807 1.15364 1.84992 1.45788 1.65011 1.12226 1.08741 1.20793 0.98006 0.93942 0.82157 1.19057 0.88910 0.96888 0.95158 1.20656 1.09336 0.99756 1.24694 0.92275 1.25657 0.99689 0.96034 0.95977 1.70073 1.34780 1.13648 1.35736 0.85726 0.79694 0.79724 0.77558 1.20706 1.19028 1.21183 1.22994 0.99544 0.97525 1.01431 1.22492 1.04328 0.97839 0.94815 0.88932 0.94361 0.91898 0.91318 0.88022 0.87070 0.90614 0.88718 0.90040 0.91788 0.89993 0.74568 0.74887 0.93860 0.93043 0.93086 0.89654 0.89146 0.90558 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.29 71.98 0.67 -2.18 16 2 C 0.14 2.48 2.98 44.99 0.13 2.62 16 3 H 0.11 1.92 7.58 -2.39 -0.02 1.90 16 4 C 0.05 0.62 5.55 71.98 0.40 1.02 16 5 O -0.38 -5.53 8.93 -148.98 -1.33 -6.86 16 6 C 0.06 0.67 3.45 31.86 0.11 0.78 16 7 H 0.11 0.64 7.89 -2.39 -0.02 0.62 16 8 C -0.15 -1.56 6.89 32.05 0.22 -1.34 16 9 C 0.05 0.52 7.78 72.65 0.56 1.08 16 10 O -0.41 -7.70 11.36 -148.98 -1.69 -9.39 16 11 C 0.02 0.33 7.58 72.45 0.55 0.88 16 12 N -0.68 -16.82 5.05 -443.85 -2.24 -19.06 16 13 C 0.52 16.71 7.85 87.27 0.69 17.39 16 14 O -0.54 -19.17 16.16 -3.23 -0.05 -19.22 16 15 C 0.49 18.89 7.88 87.27 0.69 19.58 16 16 O -0.56 -23.44 16.47 -3.22 -0.05 -23.49 16 17 N -0.67 -27.31 5.46 -464.42 -2.54 -29.84 16 18 C 0.17 7.98 5.53 86.38 0.48 8.46 16 19 C 0.00 0.03 1.32 -52.92 -0.07 -0.04 16 20 C -0.51 -26.39 8.57 25.60 0.22 -26.17 16 21 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 22 C 0.03 1.47 5.42 84.65 0.46 1.93 16 23 N -0.90 -51.03 13.09 21.45 0.28 -50.75 16 24 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 28 C -0.18 -7.09 9.96 30.60 0.30 -6.79 16 29 C -0.16 -7.00 9.66 30.60 0.30 -6.70 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.23 7.56 -2.39 -0.02 1.21 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.57 8.11 -2.39 -0.02 0.55 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.42 10.16 7.86 -92.71 -0.73 9.43 16 42 H 0.41 16.61 7.84 -92.71 -0.73 15.89 16 43 H 0.04 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.05 2.25 8.05 -2.39 -0.02 2.24 16 45 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 46 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 47 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 49 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -66.48 412.01 -0.39 -66.87 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.49 Total: 36.19 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.71 Total: 10.50 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.50 Total: -99.65 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -3.13 Total: -58.97 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.48 -0.39 -66.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323630267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.983 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds