Wall clock time and date at job start Tue Mar 31 2020 23:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47595 * 2 1 4 4 C 1.53093 * 109.47953 * 239.98432 * 2 1 3 5 5 C 1.53178 * 109.16124 * 182.40574 * 4 2 1 6 6 H 1.08992 * 109.54437 * 297.01809 * 5 4 2 7 7 C 1.53003 * 109.54058 * 176.84203 * 5 4 2 8 8 N 1.46503 * 109.47053 * 175.17784 * 7 5 4 9 9 C 1.34774 * 120.00240 * 180.02562 * 8 7 5 10 10 O 1.21355 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.49444 * 119.99983 * 179.97438 * 9 8 7 12 12 O 1.21355 * 120.00183 * 0.02562 * 11 9 8 13 13 N 1.34784 * 119.99977 * 180.02562 * 11 9 8 14 14 C 1.47426 * 125.64612 * 0.02562 * 13 11 9 15 15 C 1.54910 * 104.83073 * 204.09218 * 14 13 11 16 16 C 1.55159 * 101.58155 * 322.99503 * 15 14 13 17 17 O 1.42899 * 110.71627 * 276.95824 * 16 15 14 18 18 C 1.50698 * 110.72034 * 153.86959 * 16 15 14 19 19 H 1.08000 * 119.99829 * 359.97438 * 18 16 15 20 20 C 1.37875 * 120.00036 * 179.97438 * 18 16 15 21 21 N 1.31518 * 120.00057 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 120.00071 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46842 * 59.99850 * 22 20 18 24 24 H 1.48503 * 109.46934 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46983 * 299.99701 * 22 20 18 26 26 C 1.47019 * 125.64840 * 179.71693 * 13 11 9 27 27 C 1.53177 * 109.10793 * 56.93669 * 5 4 2 28 28 C 1.53103 * 109.15379 * 303.14915 * 27 5 4 29 29 O 1.42896 * 109.49070 * 57.48066 * 28 27 5 30 30 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47197 * 300.02019 * 1 2 3 32 32 H 1.09000 * 109.47289 * 60.01915 * 1 2 3 33 33 H 1.09002 * 109.52547 * 62.49786 * 4 2 1 34 34 H 1.09003 * 109.51949 * 302.31190 * 4 2 1 35 35 H 1.09004 * 109.47174 * 55.18181 * 7 5 4 36 36 H 1.08997 * 109.47475 * 295.17681 * 7 5 4 37 37 H 0.97005 * 119.99897 * 0.02562 * 8 7 5 38 38 H 1.09002 * 110.36613 * 322.93126 * 14 13 11 39 39 H 1.08998 * 110.36249 * 85.14655 * 14 13 11 40 40 H 1.08997 * 111.00440 * 81.06524 * 15 14 13 41 41 H 1.08998 * 111.00397 * 204.88045 * 15 14 13 42 42 H 0.96698 * 114.00388 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00252 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.88426 * 298.39753 * 26 13 11 45 45 H 1.09007 * 109.88165 * 59.55764 * 26 13 11 46 46 H 1.08993 * 109.52893 * 62.96629 * 27 5 4 47 47 H 1.08999 * 109.52080 * 183.16005 * 27 5 4 48 48 H 1.09006 * 109.41050 * 297.49213 * 28 27 5 49 49 H 1.09009 * 109.49108 * 177.51363 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 3.5711 -0.7705 -1.2124 6 1 3.9689 0.2437 -1.2425 7 6 4.0877 -1.5590 -2.4175 8 7 5.5516 -1.5072 -2.4439 9 6 6.2306 -2.1354 -3.4240 10 8 5.6294 -2.7437 -4.2850 11 6 7.7239 -2.0821 -3.4512 12 8 8.3251 -1.4735 -2.5904 13 7 8.4029 -2.7100 -4.4316 14 6 7.8020 -3.4813 -5.5349 15 6 8.9116 -4.4662 -5.9806 16 6 10.1846 -3.5932 -5.8229 17 8 10.3765 -2.7668 -6.9728 18 6 11.3961 -4.4561 -5.5808 19 1 11.2942 -5.5304 -5.5384 20 6 12.6347 -3.8740 -5.4133 21 7 12.7590 -2.5658 -5.4654 22 14 14.1365 -4.9436 -5.1125 23 1 14.3256 -5.8655 -6.2612 24 1 15.3370 -4.0816 -4.9673 25 1 13.9406 -5.7337 -3.8706 26 6 9.8653 -2.7337 -4.5815 27 6 4.0195 -1.4588 0.0805 28 6 3.4307 -0.7094 1.2788 29 8 2.0066 -0.6743 1.1663 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 1.7148 -0.1839 -2.1400 34 1 1.6443 -1.7372 -1.2713 35 1 3.6922 -1.1218 -3.3344 36 1 3.7622 -2.5963 -2.3398 37 1 6.0321 -1.0207 -1.7559 38 1 6.9277 -4.0289 -5.1828 39 1 7.5284 -2.8187 -6.3560 40 1 8.9498 -5.3350 -5.3235 41 1 8.7711 -4.7695 -7.0181 42 1 11.1591 -2.2009 -6.9243 43 1 13.6304 -2.1562 -5.3480 44 1 10.2398 -1.7200 -4.7237 45 1 10.3214 -3.1790 -3.6973 46 1 3.6645 -2.4893 0.0868 47 1 5.1078 -1.4470 0.1409 48 1 3.8193 0.3089 1.2958 49 1 3.7100 -1.2204 2.2003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326125102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:57 Heat of formation + Delta-G solvation = -173.909762 kcal Electronic energy + Delta-G solvation = -30201.686697 eV Core-core repulsion = 25935.350051 eV Total energy + Delta-G solvation = -4266.336646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54630 -39.88149 -38.47908 -37.23404 -36.09627 -34.38660 -33.36606 -32.89419 -32.20033 -30.17575 -28.85411 -27.98910 -27.03782 -25.60735 -23.95271 -23.48584 -22.16284 -21.38080 -20.70487 -19.79790 -19.40603 -17.36050 -17.23104 -16.77265 -16.60111 -16.22977 -15.93788 -15.65002 -15.33676 -15.07363 -14.86671 -14.49418 -14.45487 -14.03990 -13.95174 -13.15001 -13.03234 -13.00126 -12.94024 -12.79042 -12.64652 -12.43719 -12.36709 -12.26269 -11.78296 -11.54855 -11.53026 -11.36050 -11.14248 -11.07518 -11.02495 -10.79734 -10.66968 -10.58967 -10.53795 -10.18696 -9.86013 -9.37628 -9.28897 -9.14639 -8.68620 -8.36928 -8.04810 -6.33256 -4.41885 1.74371 2.58458 3.20474 3.25880 3.28110 3.39247 3.55267 3.83306 4.17647 4.23516 4.25733 4.37117 4.51534 4.67234 4.76588 4.83763 4.94757 4.97479 5.06444 5.11008 5.19518 5.27938 5.34825 5.42808 5.47805 5.48998 5.59209 5.63004 5.70053 5.77926 5.82311 5.85642 5.92289 6.02823 6.13989 6.34142 6.49169 6.73722 6.77561 6.81157 6.87372 7.13796 7.19439 7.30711 7.69422 7.82939 7.97855 7.99878 8.39401 8.61561 9.27180 9.40524 10.74530 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.002065 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.572643 B =13555.361480 C =14115.758664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.142 4.142 5 C -0.103 4.103 6 H 0.081 0.919 7 C 0.126 3.874 8 N -0.707 5.707 9 C 0.511 3.489 10 O -0.516 6.516 11 C 0.506 3.494 12 O -0.540 6.540 13 N -0.574 5.574 14 C 0.099 3.901 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.098 3.902 27 C -0.155 4.155 28 C 0.062 3.938 29 O -0.381 6.381 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.386 0.614 43 H 0.272 0.728 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.051 0.949 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.341 5.138 9.747 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.180 4.180 5 C -0.122 4.122 6 H 0.099 0.901 7 C 0.002 3.998 8 N -0.362 5.362 9 C 0.292 3.708 10 O -0.392 6.392 11 C 0.288 3.712 12 O -0.419 6.419 13 N -0.306 5.306 14 C -0.023 4.023 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.023 4.023 27 C -0.193 4.193 28 C -0.014 4.014 29 O -0.300 6.300 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.238 0.762 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.019 4.815 9.563 23.588 hybrid contribution 1.887 0.203 0.507 1.964 sum -19.132 5.018 10.070 22.195 Atomic orbital electron populations 1.21769 0.92965 1.03057 1.02477 1.22077 0.95127 0.94973 0.84950 0.92395 1.22210 0.94281 1.02636 0.98869 1.21468 0.96189 1.00112 0.94406 0.90069 1.21449 0.79101 1.01076 0.98151 1.45758 1.07223 1.53910 1.29294 1.20410 0.88987 0.79517 0.81864 1.90705 1.70402 1.41001 1.37053 1.19573 0.87332 0.81535 0.82791 1.90720 1.69893 1.43375 1.37913 1.48692 1.09926 1.47680 1.24294 1.22644 0.96939 0.94048 0.88700 1.22828 0.94320 0.97195 1.01546 1.19494 0.91848 0.86511 0.81381 1.86094 1.51638 1.59054 1.42674 1.21498 0.91763 0.93803 1.50436 0.91398 1.25091 0.99469 0.95283 0.93482 1.69563 1.25484 1.09071 1.49520 0.86420 0.81193 0.80108 0.78971 1.19933 1.21051 1.19995 1.23276 0.74895 1.02129 1.02002 1.22309 1.01646 1.00843 0.94469 1.22562 0.80835 0.99663 0.98375 1.87939 1.21100 1.77979 1.42994 0.91716 0.91837 0.91003 0.90366 0.90442 0.90887 0.90894 0.75268 0.89530 0.91358 0.90518 0.90263 0.76212 0.91795 0.91198 0.90969 0.90531 0.90356 0.93099 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.56 37.16 0.36 -0.48 16 2 C 0.09 0.60 3.26 -26.68 -0.09 0.51 16 3 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 4 C -0.14 -0.93 4.71 -26.59 -0.13 -1.05 16 5 C -0.10 -0.76 2.31 -90.43 -0.21 -0.96 16 6 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 7 C 0.13 1.21 5.07 -4.04 -0.02 1.18 16 8 N -0.71 -8.70 5.31 -60.73 -0.32 -9.02 16 9 C 0.51 8.36 7.86 -11.59 -0.09 8.27 16 10 O -0.52 -9.13 13.78 5.49 0.08 -9.05 16 11 C 0.51 9.95 7.91 -11.58 -0.09 9.86 16 12 O -0.54 -11.52 16.80 5.49 0.09 -11.42 16 13 N -0.57 -12.09 3.33 -171.02 -0.57 -12.65 16 14 C 0.10 1.91 6.05 -2.53 -0.02 1.90 16 15 C -0.12 -2.48 6.23 -24.58 -0.15 -2.63 16 16 C 0.25 6.00 0.86 -89.93 -0.08 5.93 16 17 O -0.58 -14.78 13.08 -35.23 -0.46 -15.24 16 18 C -0.54 -13.87 8.11 -34.44 -0.28 -14.14 16 19 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 20 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 21 N -0.90 -23.47 10.97 55.43 0.61 -22.86 16 22 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 C 0.10 2.34 5.54 -3.06 -0.02 2.32 16 27 C -0.15 -1.16 5.26 -26.59 -0.14 -1.30 16 28 C 0.06 0.46 6.84 37.21 0.25 0.71 16 29 O -0.38 -3.39 10.41 -35.23 -0.37 -3.76 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.41 4.66 7.16 -40.82 -0.29 4.37 16 38 H 0.09 1.57 6.16 -51.93 -0.32 1.25 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.39 9.98 6.98 45.56 0.32 10.30 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 44 H 0.07 1.79 8.07 -51.93 -0.42 1.38 16 45 H 0.07 1.83 7.81 -51.93 -0.41 1.43 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.59 7.29 -51.93 -0.38 0.21 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -29.42 390.95 -8.24 -37.66 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.37 Total: 13.48 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.79 Total: 11.81 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.28 Total: -44.53 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.66 Total: -39.47 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.42 -8.24 -37.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326125102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.252 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds