Wall clock time and date at job start Tue Mar 31 2020 23:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 O 1.42892 * 109.47270 * 239.99327 * 2 1 3 5 5 C 1.53002 * 109.46873 * 119.99203 * 2 1 3 6 6 H 1.09000 * 109.50146 * 305.00249 * 5 2 1 7 7 C 1.53043 * 109.52252 * 184.91983 * 5 2 1 8 8 C 1.53042 * 109.53908 * 178.66962 * 7 5 2 9 9 C 1.53199 * 109.31082 * 61.36599 * 8 7 5 10 10 N 1.46923 * 108.77583 * 305.36530 * 9 8 7 11 11 C 1.34778 * 120.63317 * 233.63311 * 10 9 8 12 12 O 1.21341 * 120.00321 * 171.38967 * 11 10 9 13 13 C 1.49450 * 119.99524 * 351.39194 * 11 10 9 14 14 O 1.21345 * 120.00323 * 353.29313 * 13 11 10 15 15 N 1.34780 * 119.99710 * 173.29654 * 13 11 10 16 16 C 1.47419 * 125.64856 * 359.69069 * 15 13 11 17 17 C 1.55129 * 104.72288 * 155.81528 * 16 15 13 18 18 C 1.55156 * 101.48561 * 37.29793 * 17 16 15 19 19 O 1.42898 * 110.72375 * 82.69509 * 18 17 16 20 20 C 1.50706 * 110.72129 * 205.97319 * 18 17 16 21 21 H 1.07995 * 119.99861 * 354.97124 * 20 18 17 22 22 C 1.37875 * 119.99776 * 174.97677 * 20 18 17 23 23 N 1.31512 * 120.00522 * 359.97438 * 22 20 18 24 24 Si 1.86799 * 119.99625 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47064 * 89.99899 * 24 22 20 26 26 H 1.48504 * 109.47093 * 209.99544 * 24 22 20 27 27 H 1.48495 * 109.47321 * 329.99632 * 24 22 20 28 28 C 1.47023 * 125.64792 * 179.97438 * 15 13 11 29 29 C 1.46927 * 118.73793 * 53.60803 * 10 9 8 30 30 H 1.08995 * 109.47420 * 300.00464 * 1 2 3 31 31 H 1.08999 * 109.46712 * 60.00616 * 1 2 3 32 32 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00211 * 300.00012 * 4 2 1 34 34 H 1.09002 * 109.46326 * 298.69103 * 7 5 2 35 35 H 1.09000 * 109.46045 * 58.64601 * 7 5 2 36 36 H 1.09001 * 109.49746 * 301.41823 * 8 7 5 37 37 H 1.08991 * 109.52559 * 181.33247 * 8 7 5 38 38 H 1.08997 * 109.58322 * 185.58054 * 9 8 7 39 39 H 1.09000 * 109.70310 * 65.22582 * 9 8 7 40 40 H 1.08990 * 110.37108 * 274.74443 * 16 15 13 41 41 H 1.08998 * 110.36819 * 37.07448 * 16 15 13 42 42 H 1.09005 * 111.19453 * 279.19611 * 17 16 15 43 43 H 1.08996 * 110.94379 * 155.29036 * 17 16 15 44 44 H 0.96699 * 114.00241 * 185.03148 * 19 18 17 45 45 H 0.96992 * 120.00430 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.88562 * 300.44488 * 28 15 13 47 47 H 1.09005 * 109.87919 * 61.45450 * 28 15 13 48 48 H 1.09003 * 109.58823 * 186.60583 * 29 10 9 49 49 H 1.09005 * 109.70485 * 66.25091 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.0399 -0.7211 1.2494 6 1 1.6055 -0.2619 2.1374 7 6 3.5653 -0.6156 1.3140 8 6 4.0731 -1.3081 2.5808 9 6 3.6926 -2.7914 2.5344 10 7 2.2423 -2.9013 2.3267 11 6 1.4820 -3.6331 3.1650 12 8 0.2723 -3.5920 3.0793 13 6 2.1289 -4.4953 4.2002 14 8 3.3346 -4.6321 4.2089 15 7 1.3730 -5.1210 5.1242 16 6 -0.0948 -5.0379 5.2331 17 6 -0.5097 -6.3379 5.9708 18 6 0.6524 -6.5015 6.9857 19 8 0.4296 -5.6947 8.1439 20 6 0.8268 -7.9489 7.3679 21 1 0.1313 -8.6909 7.0045 22 6 1.8742 -8.3256 8.1814 23 7 2.7214 -7.4221 8.6236 24 14 2.0900 -10.1195 8.6556 25 1 2.9510 -10.7964 7.6529 26 1 2.7281 -10.2044 9.9939 27 1 0.7625 -10.7836 8.6972 28 6 1.8764 -5.9949 6.1940 29 6 1.6365 -2.1977 1.1880 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5953 -1.2327 34 1 4.0001 -1.0968 0.4379 35 1 3.8562 0.4347 1.3329 36 1 3.6195 -0.8434 3.4562 37 1 5.1573 -1.2123 2.6386 38 1 3.9639 -3.2677 3.4765 39 1 4.2175 -3.2799 1.7135 40 1 -0.3831 -4.1614 5.8132 41 1 -0.5474 -5.0037 4.2421 42 1 -0.5514 -7.1841 5.2849 43 1 -1.4619 -6.2072 6.4849 44 1 1.1625 -5.7010 8.7747 45 1 3.4585 -7.6872 9.1956 46 1 2.4135 -6.8390 5.7614 47 1 2.5388 -5.4319 6.8516 48 1 0.5511 -2.2823 1.2416 49 1 1.9914 -2.6350 0.2547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326215370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:01 Heat of formation + Delta-G solvation = -155.682912 kcal Electronic energy + Delta-G solvation = -31419.050558 eV Core-core repulsion = 27153.504287 eV Total energy + Delta-G solvation = -4265.546271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90222 -39.44179 -38.21623 -37.42645 -36.56094 -34.39424 -33.02807 -32.28317 -32.04278 -30.21467 -29.57429 -27.96457 -26.74055 -25.33536 -24.48710 -23.37201 -21.89952 -21.69495 -20.22872 -19.63822 -18.96692 -17.28944 -17.21926 -16.76991 -16.59221 -16.13118 -15.75655 -15.57972 -15.17484 -14.76328 -14.57867 -14.36305 -14.30840 -14.12004 -13.96882 -13.24943 -13.06910 -13.05287 -12.90315 -12.84549 -12.51257 -12.40742 -12.28928 -11.89143 -11.71388 -11.56243 -11.32924 -11.27467 -11.12216 -11.11128 -10.92166 -10.76976 -10.67768 -10.52786 -10.41808 -10.21303 -10.11304 -9.33645 -8.92378 -8.78452 -8.68628 -8.37857 -8.05765 -6.33431 -4.41924 1.68896 2.47613 3.18552 3.26312 3.29359 3.47051 3.67425 3.99840 4.23116 4.26602 4.44386 4.53616 4.55174 4.84369 4.87606 4.94153 4.94964 5.06198 5.09286 5.34180 5.40363 5.45463 5.48313 5.57516 5.61763 5.71143 5.77036 5.79512 5.81901 5.84494 5.88211 5.99548 6.05348 6.17185 6.23598 6.38370 6.48014 6.72515 6.78230 6.81844 7.10779 7.16129 7.27025 7.28103 7.67909 7.75100 7.97525 7.99809 8.36339 8.62192 9.24213 9.33137 10.74418 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.002628 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.205022 B =10653.096175 C =11207.706887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 H 0.101 0.899 4 O -0.562 6.562 5 C -0.135 4.135 6 H 0.084 0.916 7 C -0.111 4.111 8 C -0.136 4.136 9 C 0.068 3.932 10 N -0.585 5.585 11 C 0.513 3.487 12 O -0.520 6.520 13 C 0.507 3.493 14 O -0.529 6.529 15 N -0.572 5.572 16 C 0.094 3.906 17 C -0.120 4.120 18 C 0.248 3.752 19 O -0.583 6.583 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.100 3.900 29 C 0.109 3.891 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.373 0.627 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.382 0.618 45 H 0.270 0.730 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 13.161 -14.516 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.051 3.949 3 H 0.119 0.881 4 O -0.368 6.368 5 C -0.154 4.154 6 H 0.102 0.898 7 C -0.149 4.149 8 C -0.174 4.174 9 C -0.053 4.053 10 N -0.319 5.319 11 C 0.297 3.703 12 O -0.396 6.396 13 C 0.290 3.710 14 O -0.409 6.409 15 N -0.303 5.303 16 C -0.028 4.028 17 C -0.158 4.158 18 C 0.207 3.793 19 O -0.391 6.391 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.021 4.021 29 C -0.014 4.014 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.221 0.779 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.232 0.768 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.114 0.886 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.544 13.834 -14.875 20.321 hybrid contribution 0.592 -1.451 0.675 1.706 sum 0.048 12.383 -14.199 18.841 Atomic orbital electron populations 1.22567 0.96231 1.03059 1.02891 1.21901 0.92900 0.96403 0.83658 0.88100 1.86578 1.77191 1.29194 1.43884 1.22238 0.97534 0.95967 0.99664 0.89751 1.21534 0.94010 1.00875 0.98481 1.21964 1.01422 0.95833 0.98158 1.22911 0.78330 0.96703 1.07405 1.47860 1.09262 1.47589 1.27141 1.20373 0.86864 0.80713 0.82352 1.90666 1.13640 1.64361 1.70936 1.19563 0.86636 0.82249 0.82509 1.90443 1.13580 1.63141 1.73778 1.48752 1.09144 1.44311 1.28063 1.22753 0.79041 0.99212 1.01776 1.22853 0.99719 0.95610 0.97596 1.19518 0.87707 0.89385 0.82665 1.86133 1.47674 1.71247 1.34084 1.21503 1.12285 0.92428 1.31269 0.91399 1.25080 0.94909 0.98476 0.94833 1.69685 1.15610 1.33747 1.34321 0.86386 0.78478 0.84047 0.77926 1.20415 1.20968 1.19657 1.23265 0.99853 0.92007 0.86985 1.21712 1.00103 0.91111 0.88432 0.91345 0.91718 0.91860 0.77856 0.91099 0.91782 0.91710 0.90433 0.83815 0.91543 0.91429 0.89098 0.90387 0.90325 0.76814 0.91957 0.90808 0.90972 0.88594 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 9.30 37.16 0.35 -0.97 16 2 C 0.11 0.83 3.34 -26.73 -0.09 0.74 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 4 O -0.56 -4.65 12.80 -35.23 -0.45 -5.10 16 5 C -0.13 -1.16 2.17 -90.50 -0.20 -1.35 16 6 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.11 -0.96 5.05 -26.69 -0.13 -1.09 16 8 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 9 C 0.07 0.84 5.98 -3.71 -0.02 0.82 16 10 N -0.58 -7.80 2.97 -173.27 -0.51 -8.31 16 11 C 0.51 8.55 7.69 -11.58 -0.09 8.46 16 12 O -0.52 -9.13 13.19 5.50 0.07 -9.06 16 13 C 0.51 9.82 7.77 -11.58 -0.09 9.73 16 14 O -0.53 -10.79 13.51 5.50 0.07 -10.72 16 15 N -0.57 -11.78 3.32 -170.89 -0.57 -12.35 16 16 C 0.09 1.79 6.18 -2.41 -0.01 1.78 16 17 C -0.12 -2.42 6.24 -24.46 -0.15 -2.57 16 18 C 0.25 5.88 0.85 -89.93 -0.08 5.80 16 19 O -0.58 -14.35 13.08 -35.23 -0.46 -14.81 16 20 C -0.54 -13.74 8.12 -34.44 -0.28 -14.02 16 21 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 22 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 23 N -0.89 -23.16 10.98 55.43 0.61 -22.55 16 24 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.10 2.33 5.23 -3.06 -0.02 2.31 16 29 C 0.11 1.11 5.06 -3.71 -0.02 1.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 6.70 -51.93 -0.35 0.10 16 33 H 0.37 2.21 7.08 45.56 0.32 2.53 16 34 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.15 2.20 4.31 -54.80 -0.24 1.96 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.63 5.98 -51.93 -0.31 1.32 16 42 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.38 9.53 7.47 45.56 0.34 9.88 16 45 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.07 1.86 7.81 -51.93 -0.41 1.45 16 47 H 0.07 1.81 7.93 -51.93 -0.41 1.40 16 48 H 0.10 1.05 5.72 -51.93 -0.30 0.75 16 49 H 0.07 0.59 6.45 -51.93 -0.33 0.25 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -28.31 377.90 -7.93 -36.25 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -6.28 Total: 14.98 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.09 Total: 10.91 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.47 Total: -43.21 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.76 Total: -39.68 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.31 -7.93 -36.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326215370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.436 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds