Wall clock time and date at job start Tue Mar 31 2020 23:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49797 * 2 1 4 4 C 1.53038 * 109.49827 * 239.93155 * 2 1 3 5 5 C 1.53038 * 109.53642 * 178.68674 * 4 2 1 6 6 H 1.09002 * 109.49388 * 301.41001 * 5 4 2 7 7 C 1.53001 * 109.52229 * 181.33378 * 5 4 2 8 8 O 1.42909 * 109.47124 * 175.14216 * 7 5 4 9 9 C 1.53187 * 109.31582 * 61.36478 * 5 4 2 10 10 N 1.46921 * 108.77613 * 305.36600 * 9 5 4 11 11 C 1.34782 * 120.63025 * 233.58687 * 10 9 5 12 12 O 1.21346 * 120.00014 * 7.14622 * 11 10 9 13 13 C 1.49454 * 119.99726 * 187.14435 * 11 10 9 14 14 O 1.21342 * 120.00376 * 6.84705 * 13 11 10 15 15 N 1.34775 * 119.99651 * 186.84788 * 13 11 10 16 16 C 1.47424 * 125.65117 * 0.02562 * 15 13 11 17 17 C 1.54912 * 104.83116 * 155.83801 * 16 15 13 18 18 C 1.55155 * 101.58150 * 37.01353 * 17 16 15 19 19 O 1.42909 * 110.71812 * 83.03720 * 18 17 16 20 20 C 1.50703 * 110.72195 * 206.13306 * 18 17 16 21 21 H 1.08000 * 119.99571 * 4.42383 * 20 18 17 22 22 C 1.37879 * 120.00224 * 184.42489 * 20 18 17 23 23 N 1.31517 * 119.99428 * 4.77934 * 22 20 18 24 24 Si 1.86793 * 119.99975 * 184.77488 * 22 20 18 25 25 H 1.48493 * 109.47387 * 265.00198 * 24 22 20 26 26 H 1.48505 * 109.46827 * 144.99965 * 24 22 20 27 27 H 1.48504 * 109.47317 * 25.00347 * 24 22 20 28 28 C 1.47029 * 125.64595 * 179.97438 * 15 13 11 29 29 C 1.46928 * 118.74140 * 53.85899 * 10 9 5 30 30 H 1.09005 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47640 * 300.06814 * 1 2 3 32 32 H 1.08996 * 109.47450 * 60.07175 * 1 2 3 33 33 H 1.09000 * 109.46141 * 58.66254 * 4 2 1 34 34 H 1.09000 * 109.46141 * 298.70300 * 4 2 1 35 35 H 1.09003 * 109.47000 * 295.13922 * 7 5 4 36 36 H 1.08995 * 109.47198 * 55.14646 * 7 5 4 37 37 H 0.96693 * 113.99880 * 179.97438 * 8 7 5 38 38 H 1.09009 * 109.58899 * 185.57623 * 9 5 4 39 39 H 1.09005 * 109.58824 * 65.15360 * 9 5 4 40 40 H 1.09001 * 110.36473 * 37.00474 * 16 15 13 41 41 H 1.09001 * 110.46390 * 274.72824 * 16 15 13 42 42 H 1.08994 * 111.00576 * 278.93470 * 17 16 15 43 43 H 1.09002 * 111.00065 * 155.08535 * 17 16 15 44 44 H 0.96707 * 113.99071 * 177.59976 * 19 18 17 45 45 H 0.97008 * 119.99234 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.88227 * 61.67705 * 28 15 13 47 47 H 1.08997 * 109.88232 * 300.51009 * 28 15 13 48 48 H 1.09002 * 109.58377 * 65.92558 * 29 10 9 49 49 H 1.09002 * 109.58727 * 186.35365 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6948 -1.2660 6 1 3.9159 0.3391 -1.2539 7 6 4.0804 -1.3884 -2.5310 8 8 5.5022 -1.2628 -2.6033 9 6 4.1052 -1.4267 -0.0310 10 7 3.5045 -0.8295 1.1694 11 6 4.2811 -0.3870 2.1783 12 8 5.4873 -0.3596 2.0485 13 6 3.6565 0.0701 3.4568 14 8 2.4646 -0.0722 3.6347 15 7 4.4171 0.6404 4.4122 16 6 5.8702 0.8740 4.3280 17 6 6.1410 2.0444 5.3060 18 6 5.1497 1.7250 6.4560 19 8 5.7109 0.7673 7.3560 20 6 4.7632 2.9823 7.1915 21 1 5.1159 3.9418 6.8430 22 6 3.9594 2.9078 8.3093 23 7 3.6072 1.7349 8.7888 24 14 3.3709 4.4726 9.1425 25 1 4.2876 4.8132 10.2600 26 1 1.9994 4.2652 9.6729 27 1 3.3578 5.5834 8.1570 28 6 3.9347 1.1335 5.7106 29 6 2.0410 -0.7292 1.2519 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.6582 -0.2240 -2.1389 34 1 1.6967 -1.7570 -1.2357 35 1 3.8100 -2.4439 -2.5007 36 1 3.6297 -0.9227 -3.4074 37 1 5.8948 -1.6808 -3.3818 38 1 5.1896 -1.3247 0.0136 39 1 3.8375 -2.4819 -0.0872 40 1 6.1510 1.1552 3.3130 41 1 6.4179 -0.0154 4.6397 42 1 5.9066 3.0028 4.8429 43 1 7.1712 2.0258 5.6618 44 1 5.1457 0.5607 8.1130 45 1 3.0420 1.6825 9.5755 46 1 3.5119 0.3100 6.2860 47 1 3.1816 1.9063 5.5571 48 1 1.6084 -1.7287 1.2981 49 1 1.7629 -0.1668 2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326229542.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:22 Heat of formation + Delta-G solvation = -156.059678 kcal Electronic energy + Delta-G solvation = -31349.880109 eV Core-core repulsion = 27084.317500 eV Total energy + Delta-G solvation = -4265.562609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.80144 -39.16418 -37.91549 -37.38230 -36.73338 -34.48740 -33.52428 -32.76320 -32.11845 -30.18709 -28.06095 -27.10797 -26.59530 -25.97188 -25.24730 -23.23968 -21.81139 -20.94438 -20.31551 -19.56827 -18.90513 -17.63569 -17.29474 -16.80902 -16.72948 -15.97262 -15.76939 -15.63394 -15.13604 -14.69074 -14.62140 -14.26818 -14.25058 -13.98720 -13.76938 -13.16329 -13.01683 -12.99817 -12.83633 -12.75784 -12.67563 -12.28304 -12.16625 -11.73967 -11.65049 -11.48536 -11.31496 -11.13034 -11.11089 -10.92313 -10.83509 -10.77751 -10.57524 -10.50125 -10.40401 -10.31447 -10.09744 -9.41729 -8.85377 -8.71307 -8.62240 -8.32007 -8.04973 -6.34385 -4.42211 1.76521 2.56005 3.18469 3.26457 3.29889 3.52209 3.72877 3.82459 4.23215 4.44305 4.52696 4.56803 4.72295 4.73965 4.93624 4.93984 5.13736 5.18469 5.23630 5.34008 5.41021 5.46947 5.50407 5.52674 5.64310 5.78619 5.86270 5.88256 5.91237 5.91777 6.00174 6.04536 6.09127 6.22401 6.30284 6.43869 6.49250 6.75426 6.79085 6.83677 7.15618 7.22024 7.31080 7.31420 7.71045 7.79806 7.97807 8.04073 8.40264 8.60877 9.26999 9.56374 10.73200 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.002839 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.691007 B = 9860.412544 C =10773.268833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.102 4.102 6 H 0.083 0.917 7 C 0.084 3.916 8 O -0.570 6.570 9 C 0.118 3.882 10 N -0.588 5.588 11 C 0.511 3.489 12 O -0.516 6.516 13 C 0.508 3.492 14 O -0.530 6.530 15 N -0.570 5.570 16 C 0.101 3.899 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.587 6.587 20 C -0.535 4.535 21 H 0.069 0.931 22 C 0.069 3.931 23 N -0.898 5.898 24 Si 0.907 3.093 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.271 1.271 28 C 0.093 3.907 29 C 0.068 3.932 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.390 0.610 45 H 0.273 0.727 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -6.305 -20.750 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.121 4.121 6 H 0.101 0.899 7 C 0.006 3.994 8 O -0.375 6.375 9 C -0.004 4.004 10 N -0.322 5.322 11 C 0.294 3.706 12 O -0.391 6.391 13 C 0.292 3.708 14 O -0.412 6.412 15 N -0.300 5.300 16 C -0.021 4.021 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.400 6.400 20 C -0.573 4.573 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.539 5.539 24 Si 0.734 3.266 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.028 4.028 29 C -0.053 4.053 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.226 0.774 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.246 0.754 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.138 -6.141 -20.442 21.574 hybrid contribution -0.917 0.263 0.174 0.970 sum -4.055 -5.878 -20.268 21.489 Atomic orbital electron populations 1.21727 0.94092 1.02049 1.02185 1.21584 0.96192 1.00117 0.94609 0.90764 1.21611 0.93505 1.01199 0.98341 1.21515 0.95679 1.01304 0.93652 0.89864 1.22150 0.81343 0.98946 0.96985 1.86546 1.20368 1.81072 1.49536 1.21650 1.00417 0.95779 0.82567 1.47920 1.07823 1.59454 1.16958 1.20306 0.86840 0.78537 0.84876 1.90709 1.14007 1.52970 1.81457 1.19632 0.86383 0.80275 0.84548 1.90389 1.14466 1.57611 1.78697 1.48687 1.10256 1.54295 1.16795 1.22612 0.79497 0.99270 1.00705 1.22852 1.00972 0.96570 0.95605 1.19470 0.86303 0.87133 0.86331 1.86076 1.50507 1.63063 1.40309 1.21577 1.31107 0.93088 1.11498 0.91303 1.25085 0.94793 0.96991 0.96431 1.69301 1.37048 1.23492 1.24033 0.86334 0.78133 0.82650 0.79507 1.20405 1.20879 1.19590 1.23353 1.00561 0.98551 0.80310 1.23169 0.77804 1.02463 1.01899 0.92516 0.91873 0.92544 0.91537 0.91531 0.93460 0.93340 0.77450 0.88111 0.91569 0.89902 0.91091 0.90604 0.90193 0.75415 0.91692 0.91357 0.90917 0.91653 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.16 0.34 -0.87 16 2 C -0.11 -1.07 2.89 -90.27 -0.26 -1.33 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -0.90 4.45 -26.69 -0.12 -1.02 16 5 C -0.10 -1.00 2.58 -90.50 -0.23 -1.23 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.08 0.64 6.43 37.16 0.24 0.88 16 8 O -0.57 -5.09 13.30 -35.23 -0.47 -5.56 16 9 C 0.12 1.44 5.56 -3.72 -0.02 1.42 16 10 N -0.59 -8.54 2.97 -173.00 -0.51 -9.05 16 11 C 0.51 9.11 7.69 -11.58 -0.09 9.02 16 12 O -0.52 -9.92 13.32 5.50 0.07 -9.84 16 13 C 0.51 10.15 7.78 -11.58 -0.09 10.06 16 14 O -0.53 -10.95 13.46 5.50 0.07 -10.88 16 15 N -0.57 -12.07 3.33 -171.02 -0.57 -12.64 16 16 C 0.10 2.01 5.96 -2.53 -0.02 1.99 16 17 C -0.12 -2.53 6.23 -24.58 -0.15 -2.69 16 18 C 0.25 6.05 0.88 -89.94 -0.08 5.97 16 19 O -0.59 -15.15 13.10 -35.23 -0.46 -15.61 16 20 C -0.53 -13.81 8.09 -34.44 -0.28 -14.09 16 21 H 0.07 1.75 7.74 -52.49 -0.41 1.34 16 22 C 0.07 1.78 5.32 -17.82 -0.09 1.69 16 23 N -0.90 -23.47 10.87 55.43 0.60 -22.87 16 24 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 C 0.09 2.21 5.94 -3.06 -0.02 2.19 16 29 C 0.07 0.87 5.34 -3.48 -0.02 0.86 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.38 1.56 9.12 45.56 0.42 1.98 16 38 H 0.10 1.44 6.84 -51.92 -0.36 1.09 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.55 6.36 -51.93 -0.33 1.22 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.50 8.00 -51.93 -0.42 1.08 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.39 10.37 6.43 45.56 0.29 10.66 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 46 H 0.07 1.74 8.07 -51.93 -0.42 1.32 16 47 H 0.07 1.79 7.81 -51.93 -0.41 1.39 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.15 2.32 4.21 -55.34 -0.23 2.09 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -29.64 384.28 -7.87 -37.51 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.49 Total: 15.22 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.89 Total: 12.83 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.48 Total: -44.56 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.78 Total: -41.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.64 -7.87 -37.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229542.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.549 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds