Wall clock time and date at job start Tue Mar 31 2020 22:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46798 * 2 1 4 4 O 1.42896 * 109.47173 * 120.00374 * 2 1 3 5 5 C 1.42898 * 113.99968 * 89.99586 * 4 2 1 6 6 H 1.08998 * 110.78700 * 328.21646 * 5 4 2 7 7 C 1.55162 * 110.71807 * 204.97458 * 5 4 2 8 8 C 1.55134 * 101.48514 * 205.97136 * 7 5 4 9 9 N 1.47426 * 104.72168 * 37.29665 * 8 7 5 10 10 C 1.34771 * 125.65024 * 155.81605 * 9 8 7 11 11 O 1.21352 * 120.00633 * 179.69206 * 10 9 8 12 12 C 1.49451 * 119.99977 * 359.69331 * 10 9 8 13 13 O 1.21357 * 120.00020 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00401 * 180.02562 * 12 10 9 15 15 C 1.47026 * 125.64902 * 0.02562 * 14 12 10 16 16 C 1.54317 * 107.27526 * 178.89602 * 15 14 12 17 17 C 1.55163 * 102.94196 * 337.80656 * 16 15 14 18 18 O 1.42905 * 111.00253 * 277.43043 * 17 16 15 19 19 C 1.50696 * 111.00667 * 153.61609 * 17 16 15 20 20 H 1.07999 * 119.99916 * 3.17446 * 19 17 16 21 21 C 1.37871 * 120.00059 * 183.18317 * 19 17 16 22 22 N 1.31517 * 120.00374 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00145 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47266 * 59.99184 * 23 21 19 25 25 H 1.48500 * 109.47498 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47064 * 299.99761 * 23 21 19 27 27 C 1.47423 * 125.65303 * 179.97438 * 14 12 10 28 28 C 1.47029 * 108.70267 * 335.55320 * 9 8 7 29 29 H 1.08996 * 109.47095 * 299.99920 * 1 2 3 30 30 H 1.08999 * 109.47116 * 59.99594 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46783 * 240.00010 * 2 1 3 33 33 H 1.09010 * 109.46770 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47618 * 300.00098 * 3 2 1 35 35 H 1.09004 * 109.47446 * 60.00415 * 3 2 1 36 36 H 1.09000 * 111.00530 * 324.21394 * 7 5 4 37 37 H 1.08998 * 111.00066 * 88.02881 * 7 5 4 38 38 H 1.08996 * 110.49814 * 278.45977 * 8 7 5 39 39 H 1.08989 * 110.34272 * 156.06043 * 8 7 5 40 40 H 1.09000 * 109.88278 * 59.47197 * 15 14 12 41 41 H 1.09007 * 109.88018 * 298.31392 * 15 14 12 42 42 H 1.08999 * 110.72159 * 219.44499 * 16 15 14 43 43 H 1.08998 * 110.72631 * 96.16634 * 16 15 14 44 44 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 45 45 H 0.96998 * 120.00413 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.36368 * 85.33294 * 27 14 12 47 47 H 1.09006 * 110.36594 * 323.01500 * 27 14 12 48 48 H 1.09005 * 109.88153 * 120.70133 * 28 9 8 49 49 H 1.08999 * 109.87982 * 241.86692 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9885 6 1 1.4827 -2.4799 0.2729 7 6 2.0974 -2.8231 2.3457 8 6 2.9638 -4.0810 2.0741 9 7 4.0778 -3.5955 1.2393 10 6 5.2895 -4.1754 1.1318 11 8 6.1328 -3.6895 0.4069 12 6 5.5949 -5.4172 1.9053 13 8 4.7519 -5.9030 2.6306 14 7 6.8068 -5.9970 1.7983 15 6 7.9160 -5.5158 0.9618 16 6 9.1044 -6.4758 1.1798 17 6 8.7851 -7.1169 2.5563 18 8 9.2051 -6.2680 3.6265 19 6 9.4128 -8.4818 2.6751 20 1 10.0357 -8.8609 1.8785 21 6 9.1918 -9.2465 3.8008 22 7 8.4335 -8.7848 4.7711 23 14 9.9704 -10.9381 3.9484 24 1 11.4486 -10.8098 3.8863 25 1 9.5812 -11.5509 5.2438 26 1 9.5010 -11.7982 2.8325 27 6 7.2403 -7.2181 2.5013 28 6 3.6457 -2.3773 0.5386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.5164 -2.2229 3.1534 37 1 1.0657 -3.1001 2.5622 38 1 2.3867 -4.8331 1.5363 39 1 3.3421 -4.4900 3.0108 40 1 8.1954 -4.5058 1.2617 41 1 7.6200 -5.5246 -0.0873 42 1 10.0436 -5.9240 1.2200 43 1 9.1352 -7.2353 0.3986 44 1 9.0260 -6.6267 4.5064 45 1 8.2783 -9.3227 5.5632 46 1 6.9378 -8.1045 1.9437 47 1 6.8257 -7.2431 3.5091 48 1 4.2968 -1.5450 0.8061 49 1 3.6724 -2.5402 -0.5388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326229999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:20 Heat of formation + Delta-G solvation = -152.583259 kcal Electronic energy + Delta-G solvation = -30659.432464 eV Core-core repulsion = 26394.020605 eV Total energy + Delta-G solvation = -4265.411860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61367 -39.38331 -38.29496 -37.20949 -36.78938 -34.29191 -33.07684 -32.21610 -30.81297 -30.22897 -28.92820 -27.90170 -27.62098 -25.95971 -24.46594 -22.88642 -21.81169 -21.66273 -20.84676 -19.66647 -18.94118 -17.63272 -17.27754 -17.01630 -16.55384 -16.05412 -15.35672 -15.31881 -15.18390 -15.01845 -14.80421 -14.44865 -14.07233 -13.56907 -13.40378 -13.19613 -13.08486 -13.02606 -12.91509 -12.84607 -12.59663 -12.48848 -12.25037 -12.09965 -11.95677 -11.66471 -11.55873 -11.54188 -11.27002 -11.05098 -10.98684 -10.84484 -10.65356 -10.56008 -10.52135 -10.21157 -9.96765 -9.38366 -9.06486 -8.79742 -8.70752 -8.43615 -7.88464 -6.31807 -4.41707 1.80009 2.43744 3.20273 3.25065 3.26375 3.28542 3.59813 3.76732 4.18690 4.24544 4.32968 4.51964 4.62562 4.65417 4.72734 4.80654 4.95757 4.99945 5.12487 5.20505 5.29735 5.41723 5.42550 5.46825 5.49211 5.60606 5.63927 5.77506 5.79865 5.80989 5.83342 5.85332 5.91730 6.05489 6.12982 6.31555 6.51353 6.72988 6.79941 6.84478 6.90972 7.17918 7.22784 7.30234 7.70783 7.77748 7.97196 8.04734 8.45494 8.62345 9.27781 9.39458 10.75244 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002250 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.746570 B =12439.024263 C =12952.150462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 C -0.151 4.151 4 O -0.365 6.365 5 C 0.078 3.922 6 H 0.080 0.920 7 C -0.130 4.130 8 C 0.099 3.901 9 N -0.595 5.595 10 C 0.524 3.476 11 O -0.517 6.517 12 C 0.512 3.488 13 O -0.534 6.534 14 N -0.573 5.573 15 C 0.111 3.889 16 C -0.122 4.122 17 C 0.249 3.751 18 O -0.582 6.582 19 C -0.538 4.538 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.895 5.895 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.092 3.908 28 C 0.086 3.914 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.272 0.728 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 14.274 -8.623 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.019 3.981 3 C -0.208 4.208 4 O -0.283 6.283 5 C 0.019 3.981 6 H 0.098 0.902 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.331 5.331 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.294 3.706 13 O -0.413 6.413 14 N -0.305 5.305 15 C -0.012 4.012 16 C -0.160 4.160 17 C 0.208 3.792 18 O -0.391 6.391 19 C -0.576 4.576 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.533 5.533 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.028 4.028 28 C -0.037 4.037 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.235 0.765 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.810 14.704 -8.781 22.642 hybrid contribution 0.015 -1.377 0.266 1.402 sum -14.795 13.327 -8.516 21.657 Atomic orbital electron populations 1.22314 0.95842 1.02405 1.02671 1.22181 0.93700 0.94027 0.88186 1.21870 1.02049 0.94327 1.02534 1.88018 1.86004 1.19007 1.35289 1.23133 0.94449 0.82182 0.98344 0.90192 1.23006 1.01210 0.95785 0.96777 1.22713 0.86701 0.95479 0.97433 1.48061 1.12657 1.26762 1.45649 1.20158 0.80922 0.85364 0.82759 1.90731 1.45400 1.64257 1.38820 1.19407 0.82736 0.84754 0.83677 1.90667 1.45996 1.64517 1.40147 1.48634 1.10939 1.27452 1.43433 1.22148 0.86600 0.98587 0.93816 1.22720 0.96735 0.97992 0.98525 1.19617 0.87162 0.88591 0.83825 1.86105 1.85173 1.49216 1.18656 1.21445 1.31431 1.00298 1.04406 0.91373 1.25098 0.94056 0.98811 0.95336 1.69636 1.37159 1.38611 1.07944 0.86428 0.79757 0.83049 0.77482 1.19959 1.21071 1.19995 1.23492 0.99106 0.82909 0.97318 1.22483 0.96230 0.88034 0.96981 0.91672 0.91635 0.92440 0.92011 0.91807 0.91234 0.91724 0.89291 0.89127 0.90754 0.87167 0.91177 0.91790 0.90490 0.90372 0.76505 0.91815 0.91439 0.89276 0.90063 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.53 37.16 0.35 -0.70 16 2 C 0.08 0.56 3.20 -26.73 -0.09 0.48 16 3 C -0.15 -0.99 9.56 37.16 0.36 -0.63 16 4 O -0.36 -3.53 9.72 -35.23 -0.34 -3.87 16 5 C 0.08 0.72 3.18 -24.89 -0.08 0.64 16 6 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 7 C -0.13 -1.22 6.82 -24.46 -0.17 -1.39 16 8 C 0.10 1.22 6.08 -2.41 -0.01 1.20 16 9 N -0.59 -8.67 3.32 -170.88 -0.57 -9.24 16 10 C 0.52 9.47 7.88 -11.59 -0.09 9.38 16 11 O -0.52 -10.01 14.45 5.49 0.08 -9.93 16 12 C 0.51 10.47 7.88 -11.59 -0.09 10.38 16 13 O -0.53 -11.42 14.03 5.49 0.08 -11.35 16 14 N -0.57 -12.31 3.33 -171.02 -0.57 -12.88 16 15 C 0.11 2.20 5.49 -3.07 -0.02 2.18 16 16 C -0.12 -2.50 6.13 -24.90 -0.15 -2.66 16 17 C 0.25 6.03 0.89 -89.62 -0.08 5.95 16 18 O -0.58 -14.96 13.19 -35.23 -0.46 -15.43 16 19 C -0.54 -13.79 8.26 -34.44 -0.28 -14.07 16 20 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 21 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 22 N -0.89 -23.40 10.68 55.43 0.59 -22.81 16 23 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 C 0.09 2.20 5.51 -2.53 -0.01 2.18 16 28 C 0.09 1.01 6.64 -3.06 -0.02 0.99 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.01 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 33 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.60 6.14 -51.94 -0.32 1.28 16 40 H 0.07 1.41 7.58 -51.93 -0.39 1.02 16 41 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 44 H 0.38 10.08 7.18 45.56 0.33 10.40 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 47 H 0.09 2.33 7.48 -51.93 -0.39 1.95 16 48 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -29.23 393.18 -8.19 -37.42 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.42 Total: 11.49 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -0.48 Total: 15.63 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.55 Total: -44.93 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.65 Total: -40.57 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.23 -8.19 -37.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.159 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds