Wall clock time and date at job start Tue Mar 31 2020 22:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46798 * 2 1 4 4 O 1.42896 * 109.47173 * 120.00374 * 2 1 3 5 5 C 1.42898 * 113.99968 * 89.99586 * 4 2 1 6 6 H 1.08998 * 110.78700 * 328.21646 * 5 4 2 7 7 C 1.55162 * 110.71807 * 204.97458 * 5 4 2 8 8 C 1.55134 * 101.48514 * 205.97136 * 7 5 4 9 9 N 1.47426 * 104.72168 * 37.29665 * 8 7 5 10 10 C 1.34771 * 125.65024 * 155.81605 * 9 8 7 11 11 O 1.21352 * 120.00633 * 179.69206 * 10 9 8 12 12 C 1.49451 * 119.99977 * 359.69331 * 10 9 8 13 13 O 1.21357 * 120.00020 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00401 * 180.02562 * 12 10 9 15 15 C 1.47026 * 125.64902 * 0.02562 * 14 12 10 16 16 C 1.54317 * 107.27526 * 178.89602 * 15 14 12 17 17 C 1.55163 * 102.94196 * 337.80656 * 16 15 14 18 18 O 1.42905 * 111.00253 * 277.43043 * 17 16 15 19 19 C 1.50696 * 111.00667 * 153.61609 * 17 16 15 20 20 H 1.07999 * 119.99916 * 3.17446 * 19 17 16 21 21 C 1.37871 * 120.00059 * 183.18317 * 19 17 16 22 22 N 1.31517 * 120.00374 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00145 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47266 * 59.99184 * 23 21 19 25 25 H 1.48500 * 109.47498 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47064 * 299.99761 * 23 21 19 27 27 C 1.47423 * 125.65303 * 179.97438 * 14 12 10 28 28 C 1.47029 * 108.70267 * 335.55320 * 9 8 7 29 29 H 1.08996 * 109.47095 * 299.99920 * 1 2 3 30 30 H 1.08999 * 109.47116 * 59.99594 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46783 * 240.00010 * 2 1 3 33 33 H 1.09010 * 109.46770 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47618 * 300.00098 * 3 2 1 35 35 H 1.09004 * 109.47446 * 60.00415 * 3 2 1 36 36 H 1.09000 * 111.00530 * 324.21394 * 7 5 4 37 37 H 1.08998 * 111.00066 * 88.02881 * 7 5 4 38 38 H 1.08996 * 110.49814 * 278.45977 * 8 7 5 39 39 H 1.08989 * 110.34272 * 156.06043 * 8 7 5 40 40 H 1.09000 * 109.88278 * 59.47197 * 15 14 12 41 41 H 1.09007 * 109.88018 * 298.31392 * 15 14 12 42 42 H 1.08999 * 110.72159 * 219.44499 * 16 15 14 43 43 H 1.08998 * 110.72631 * 96.16634 * 16 15 14 44 44 H 0.96696 * 114.00036 * 179.97438 * 18 17 16 45 45 H 0.96998 * 120.00413 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.36368 * 85.33294 * 27 14 12 47 47 H 1.09006 * 110.36594 * 323.01500 * 27 14 12 48 48 H 1.09005 * 109.88153 * 120.70133 * 28 9 8 49 49 H 1.08999 * 109.87982 * 241.86692 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9885 6 1 1.4827 -2.4799 0.2729 7 6 2.0974 -2.8231 2.3457 8 6 2.9638 -4.0810 2.0741 9 7 4.0778 -3.5955 1.2393 10 6 5.2895 -4.1754 1.1318 11 8 6.1328 -3.6895 0.4069 12 6 5.5949 -5.4172 1.9053 13 8 4.7519 -5.9030 2.6306 14 7 6.8068 -5.9970 1.7983 15 6 7.9160 -5.5158 0.9618 16 6 9.1044 -6.4758 1.1798 17 6 8.7851 -7.1169 2.5563 18 8 9.2051 -6.2680 3.6265 19 6 9.4128 -8.4818 2.6751 20 1 10.0357 -8.8609 1.8785 21 6 9.1918 -9.2465 3.8008 22 7 8.4335 -8.7848 4.7711 23 14 9.9704 -10.9381 3.9484 24 1 11.4486 -10.8098 3.8863 25 1 9.5812 -11.5509 5.2438 26 1 9.5010 -11.7982 2.8325 27 6 7.2403 -7.2181 2.5013 28 6 3.6457 -2.3773 0.5386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.5164 -2.2229 3.1534 37 1 1.0657 -3.1001 2.5622 38 1 2.3867 -4.8331 1.5363 39 1 3.3421 -4.4900 3.0108 40 1 8.1954 -4.5058 1.2617 41 1 7.6200 -5.5246 -0.0873 42 1 10.0436 -5.9240 1.2200 43 1 9.1352 -7.2353 0.3986 44 1 9.0260 -6.6267 4.5064 45 1 8.2783 -9.3227 5.5632 46 1 6.9378 -8.1045 1.9437 47 1 6.8257 -7.2431 3.5091 48 1 4.2968 -1.5450 0.8061 49 1 3.6724 -2.5402 -0.5388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326229999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:19 Heat of formation + Delta-G solvation = -172.983465 kcal Electronic energy + Delta-G solvation = -30660.317084 eV Core-core repulsion = 26394.020605 eV Total energy + Delta-G solvation = -4266.296479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99449 -40.57091 -39.55136 -38.88752 -37.86298 -36.10791 -34.20646 -33.77682 -31.97847 -31.76670 -29.98555 -29.62239 -28.09934 -27.67649 -25.93257 -24.30961 -23.02525 -22.33377 -21.83682 -21.49246 -20.34489 -19.18635 -18.49005 -18.38910 -18.03597 -17.36422 -17.08880 -16.69016 -16.40321 -16.21030 -15.94322 -15.78990 -15.28535 -14.89037 -14.75942 -14.69782 -14.41016 -14.23518 -14.03067 -13.92577 -13.61364 -13.53236 -13.46374 -13.33678 -13.08407 -12.88062 -12.80853 -12.69637 -12.59868 -12.43634 -12.33868 -12.25655 -12.17712 -12.13057 -11.79865 -11.49518 -11.22370 -10.75693 -10.65277 -10.51209 -10.34508 -10.01215 -9.61522 -8.26147 -6.43425 0.28392 1.08982 1.45438 1.46347 1.54226 2.04560 2.24553 2.39585 2.67788 2.99394 3.06914 3.44857 3.47471 3.75542 3.96050 4.00525 4.05478 4.13389 4.14958 4.19609 4.24464 4.29804 4.31757 4.54031 4.56733 4.64159 4.69851 4.77380 4.78705 4.85806 4.90974 4.94988 4.95663 4.97612 5.04093 5.05008 5.10464 5.18052 5.32069 5.32629 5.36621 5.41905 5.73881 5.93819 6.01367 6.25040 6.27840 6.49193 6.65174 6.86411 7.27754 7.35254 8.79444 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.002250 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.746570 B =12439.024263 C =12952.150462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.151 4.151 4 O -0.380 6.380 5 C 0.088 3.912 6 H 0.107 0.893 7 C -0.119 4.119 8 C 0.094 3.906 9 N -0.588 5.588 10 C 0.525 3.475 11 O -0.535 6.535 12 C 0.505 3.495 13 O -0.549 6.549 14 N -0.582 5.582 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.590 6.590 19 C -0.556 4.556 20 H 0.071 0.929 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 0.967 3.033 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.107 3.893 28 C 0.082 3.918 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.377 0.623 45 H 0.272 0.728 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.337 14.787 -10.229 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 C -0.208 4.208 4 O -0.299 6.299 5 C 0.030 3.970 6 H 0.125 0.875 7 C -0.157 4.157 8 C -0.028 4.028 9 N -0.323 5.323 10 C 0.308 3.692 11 O -0.412 6.412 12 C 0.289 3.711 13 O -0.429 6.429 14 N -0.314 5.314 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.399 6.399 19 C -0.594 4.594 20 H 0.090 0.910 21 C -0.174 4.174 22 N -0.555 5.555 23 Si 0.792 3.208 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.015 4.015 28 C -0.040 4.040 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.227 0.773 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.179 15.253 -10.401 24.548 hybrid contribution 0.351 -1.462 0.789 1.698 sum -15.828 13.791 -9.612 23.089 Atomic orbital electron populations 1.22285 0.94649 1.02813 1.03122 1.22405 0.94674 0.94096 0.87681 1.21894 1.01388 0.94262 1.03238 1.88012 1.86162 1.19096 1.36633 1.23100 0.93080 0.82399 0.98458 0.87524 1.22964 1.02003 0.94041 0.96720 1.22844 0.86384 0.97377 0.96156 1.48153 1.11847 1.27051 1.45202 1.19598 0.82126 0.84775 0.82746 1.90714 1.46239 1.64564 1.39694 1.19986 0.82152 0.85451 0.83530 1.90656 1.46382 1.65136 1.40701 1.48674 1.11888 1.27081 1.43788 1.22143 0.85756 0.97873 0.94503 1.22732 0.97439 0.98437 0.96668 1.19869 0.87328 0.88665 0.84924 1.86099 1.85365 1.49723 1.18700 1.21731 1.31777 1.01104 1.04767 0.91035 1.25832 0.94419 1.02064 0.95071 1.69747 1.37883 1.39640 1.08218 0.85468 0.78868 0.79063 0.77394 1.19634 1.21049 1.19389 1.23072 0.98942 0.83799 0.95647 1.22731 0.97758 0.86127 0.97397 0.92254 0.90190 0.92045 0.91158 0.92859 0.89375 0.92212 0.90312 0.86180 0.89251 0.89684 0.91661 0.89820 0.89700 0.88729 0.77311 0.91897 0.92255 0.92502 0.91241 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.53 71.99 0.69 -0.90 16 2 C 0.07 0.84 3.20 30.60 0.10 0.94 16 3 C -0.15 -1.72 9.56 71.98 0.69 -1.03 16 4 O -0.38 -6.55 9.72 -148.98 -1.45 -8.00 16 5 C 0.09 1.40 3.18 31.78 0.10 1.51 16 6 H 0.11 1.19 7.77 -2.39 -0.02 1.17 16 7 C -0.12 -2.00 6.82 32.07 0.22 -1.78 16 8 C 0.09 2.21 6.08 86.93 0.53 2.74 16 9 N -0.59 -16.62 3.32 -812.91 -2.70 -19.33 16 10 C 0.52 18.85 7.88 87.27 0.69 19.54 16 11 O -0.53 -20.43 14.45 -3.25 -0.05 -20.47 16 12 C 0.51 20.97 7.88 87.27 0.69 21.66 16 13 O -0.55 -24.05 14.03 -3.27 -0.05 -24.09 16 14 N -0.58 -25.36 3.33 -813.35 -2.71 -28.06 16 15 C 0.12 4.66 5.49 86.73 0.48 5.13 16 16 C -0.12 -4.65 6.13 31.78 0.19 -4.46 16 17 C 0.23 11.41 0.89 -10.15 -0.01 11.40 16 18 O -0.59 -31.04 13.19 -148.98 -1.96 -33.01 16 19 C -0.56 -28.60 8.26 25.60 0.21 -28.39 16 20 H 0.07 3.55 7.78 -2.91 -0.02 3.52 16 21 C 0.03 1.39 5.27 84.65 0.45 1.84 16 22 N -0.92 -48.89 10.68 21.45 0.23 -48.66 16 23 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 C 0.11 5.24 5.51 86.86 0.48 5.72 16 28 C 0.08 1.79 6.64 86.73 0.58 2.36 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.53 8.01 -2.39 -0.02 0.51 16 32 H 0.07 0.75 7.82 -2.39 -0.02 0.73 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 2.48 6.14 -2.39 -0.01 2.47 16 40 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 41 H 0.08 2.94 7.70 -2.38 -0.02 2.92 16 42 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 43 H 0.09 3.48 8.03 -2.39 -0.02 3.47 16 44 H 0.38 20.53 7.18 -74.06 -0.53 20.00 16 45 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.06 2.93 8.03 -2.38 -0.02 2.91 16 47 H 0.06 3.11 7.48 -2.38 -0.02 3.09 16 48 H 0.07 1.71 8.06 -2.38 -0.02 1.69 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -63.51 393.18 -0.17 -63.68 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.42 Total: 38.61 kcal Atomic # 6 Polarization: 30.20 SS G_CDS: 6.07 Total: 36.27 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -5.18 Total: -96.05 kcal Atomic # 8 Polarization: -82.07 SS G_CDS: -3.50 Total: -85.57 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.51 -0.17 -63.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326229999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.306 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds