Wall clock time and date at job start Tue Mar 31 2020 23:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99630 * 2 1 4 4 H 1.08989 * 109.46602 * 29.97074 * 3 2 1 5 5 C 1.53048 * 109.45489 * 269.99671 * 3 2 1 6 6 C 1.53194 * 109.30894 * 178.62026 * 5 3 2 7 7 N 1.46924 * 108.78004 * 54.63144 * 6 5 3 8 8 C 1.34775 * 120.62752 * 126.36391 * 7 6 5 9 9 O 1.21349 * 119.99950 * 188.71428 * 8 7 6 10 10 C 1.49458 * 120.00048 * 8.72577 * 8 7 6 11 11 O 1.21346 * 119.99887 * 6.83032 * 10 8 7 12 12 N 1.34778 * 119.99588 * 186.82873 * 10 8 7 13 13 C 1.47420 * 125.65274 * 359.69561 * 12 10 8 14 14 C 1.54906 * 104.83422 * 156.13415 * 13 12 10 15 15 C 1.55155 * 101.58315 * 37.00735 * 14 13 12 16 16 O 1.42901 * 110.87398 * 82.93122 * 15 14 13 17 17 C 1.50701 * 110.71971 * 206.13678 * 15 14 13 18 18 H 1.08006 * 119.99794 * 352.08221 * 17 15 14 19 19 C 1.37879 * 120.00093 * 172.08310 * 17 15 14 20 20 N 1.31515 * 119.99511 * 6.22590 * 19 17 15 21 21 Si 1.86801 * 120.00083 * 186.22870 * 19 17 15 22 22 H 1.48497 * 109.47242 * 94.97642 * 21 19 17 23 23 H 1.48498 * 109.46851 * 214.97697 * 21 19 17 24 24 H 1.48505 * 109.46734 * 334.97636 * 21 19 17 25 25 C 1.47026 * 125.64494 * 179.97438 * 12 10 8 26 26 C 1.46921 * 118.73934 * 306.65002 * 7 6 5 27 27 C 1.52755 * 109.01222 * 53.30125 * 26 7 6 28 28 H 1.09007 * 109.38444 * 65.51749 * 27 26 7 29 29 C 1.53002 * 109.56641 * 185.55160 * 27 26 7 30 30 H 1.09010 * 109.47368 * 300.00141 * 1 2 3 31 31 H 1.08994 * 109.47110 * 60.00381 * 1 2 3 32 32 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.49526 * 58.66764 * 5 3 2 34 34 H 1.08997 * 109.52652 * 298.58161 * 5 3 2 35 35 H 1.09004 * 109.58679 * 294.84405 * 6 5 3 36 36 H 1.09001 * 109.70098 * 174.49541 * 6 5 3 37 37 H 1.09009 * 110.36125 * 274.96827 * 13 12 10 38 38 H 1.08999 * 110.37120 * 37.29028 * 13 12 10 39 39 H 1.09000 * 111.00318 * 278.92687 * 14 13 12 40 40 H 1.09001 * 111.03811 * 155.09535 * 14 13 12 41 41 H 0.96698 * 113.99737 * 184.93520 * 16 15 14 42 42 H 0.97005 * 119.99617 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.88294 * 300.21740 * 25 12 10 44 44 H 1.09000 * 109.87747 * 61.38075 * 25 12 10 45 45 H 1.09003 * 109.58763 * 173.14451 * 26 7 6 46 46 H 1.09005 * 109.58336 * 293.55763 * 26 7 6 47 47 H 1.08999 * 109.47216 * 179.97438 * 29 27 26 48 48 H 1.09001 * 109.47102 * 299.96859 * 29 27 26 49 49 H 1.08995 * 109.46787 * 59.96912 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3446 1.9993 0.5133 5 6 2.2175 1.7712 -1.4431 6 6 2.8086 3.1845 -1.4393 7 7 4.0307 3.1839 -0.6239 8 6 5.1927 3.6446 -1.1279 9 8 6.2248 3.4952 -0.5075 10 6 5.2100 4.3397 -2.4509 11 8 4.1667 4.5997 -3.0133 12 7 6.3845 4.6777 -3.0192 13 6 7.7196 4.4289 -2.4457 14 6 8.6774 4.4129 -3.6631 15 6 8.0609 5.5195 -4.5591 16 8 8.5077 6.8137 -4.1498 17 6 8.3918 5.2772 -6.0092 18 1 9.0882 4.4977 -6.2813 19 6 7.8055 6.0505 -6.9886 20 7 7.0542 7.0768 -6.6541 21 14 8.0784 5.6405 -8.7906 22 1 6.9583 4.7982 -9.2817 23 1 8.1366 6.8965 -9.5806 24 1 9.3572 4.9008 -8.9417 25 6 6.5461 5.3607 -4.3111 26 6 3.9635 2.6658 0.7493 27 6 3.3584 1.2634 0.7229 28 1 4.0328 0.5882 0.1962 29 6 3.1543 0.7664 2.1555 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.2602 1.7785 -1.9641 34 1 2.9026 1.0918 -1.9502 35 1 2.0862 3.8815 -1.0145 36 1 3.0497 3.4847 -2.4591 37 1 7.9926 5.2301 -1.7588 38 1 7.7397 3.4665 -1.9345 39 1 8.6548 3.4458 -4.1652 40 1 9.6933 4.6724 -3.3651 41 1 8.0923 7.5431 -4.6299 42 1 6.6414 7.6207 -7.3432 43 1 6.1010 4.7616 -5.1054 44 1 6.0719 6.3414 -4.2736 45 1 4.9670 2.6214 1.1726 46 1 3.3373 3.3197 1.3563 47 1 2.7221 -0.2340 2.1349 48 1 4.1148 0.7366 2.6700 49 1 2.4809 1.4425 2.6821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326265247.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:09 Heat of formation + Delta-G solvation = -145.244627 kcal Electronic energy + Delta-G solvation = -31319.517554 eV Core-core repulsion = 27054.423921 eV Total energy + Delta-G solvation = -4265.093633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87207 -39.42378 -38.30466 -37.40006 -36.53797 -34.40984 -33.46472 -32.28155 -31.62249 -30.21280 -28.04357 -27.34011 -27.32745 -25.85843 -24.83380 -23.20934 -22.55053 -21.79479 -20.40353 -19.64923 -18.97431 -17.21207 -17.10475 -16.82213 -16.69910 -16.05181 -15.71975 -15.45418 -15.28335 -15.19260 -14.70168 -14.41341 -14.33832 -13.94092 -13.66979 -13.30668 -13.11291 -13.02773 -12.93401 -12.75085 -12.46236 -12.36824 -12.25860 -11.94234 -11.78063 -11.55483 -11.47875 -11.41123 -11.19938 -11.11787 -10.91011 -10.69164 -10.65605 -10.60338 -10.50860 -10.18643 -9.78051 -9.34535 -8.91929 -8.82947 -8.66399 -8.35128 -8.07051 -6.33494 -4.40941 1.70469 2.48894 3.18803 3.27039 3.29930 3.37547 3.51981 3.69817 4.23928 4.33916 4.49078 4.57910 4.69133 4.84095 4.95260 5.00499 5.04883 5.07315 5.13246 5.22345 5.32574 5.38538 5.44012 5.45764 5.50736 5.60058 5.76183 5.77454 5.82971 5.88897 5.92284 5.99065 6.02977 6.07555 6.24388 6.36683 6.48047 6.73004 6.78449 6.80427 6.92216 7.10076 7.15037 7.30074 7.68438 7.74931 7.98562 8.00078 8.36581 8.63197 9.24964 9.36370 10.74579 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.002715 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.566380 B =10312.381835 C =11131.089687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.093 3.907 4 H 0.062 0.938 5 C -0.156 4.156 6 C 0.072 3.928 7 N -0.590 5.590 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.508 3.492 11 O -0.530 6.530 12 N -0.571 5.571 13 C 0.101 3.899 14 C -0.121 4.121 15 C 0.247 3.753 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.099 3.901 26 C 0.116 3.884 27 C -0.102 4.102 28 H 0.084 0.916 29 C -0.141 4.141 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.383 0.617 42 H 0.270 0.730 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -10.214 14.125 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.035 3.965 4 H 0.080 0.920 5 C -0.195 4.195 6 C -0.049 4.049 7 N -0.324 5.324 8 C 0.297 3.703 9 O -0.392 6.392 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.302 5.302 13 C -0.021 4.021 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.022 4.022 26 C -0.007 4.007 27 C -0.121 4.121 28 H 0.102 0.898 29 C -0.199 4.199 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.233 0.767 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.966 -10.520 14.515 21.015 hybrid contribution -0.776 0.401 -1.350 1.608 sum -11.742 -10.119 13.165 20.337 Atomic orbital electron populations 1.22774 0.81286 1.02599 0.99925 1.87911 1.19407 1.27748 1.95021 1.22206 0.94342 0.84487 0.95421 0.92024 1.22471 1.02197 0.97626 0.97180 1.22850 0.85296 0.95575 1.01205 1.47925 1.09434 1.60869 1.14160 1.20338 0.83453 0.79451 0.87047 1.90700 1.31274 1.56203 1.61058 1.19580 0.83785 0.81702 0.85829 1.90434 1.30312 1.55828 1.64513 1.48740 1.05342 1.54086 1.22062 1.22617 0.81119 1.01809 0.96586 1.22827 0.98537 0.99555 0.94967 1.19528 0.86296 0.81391 0.92095 1.86130 1.70129 1.16865 1.66123 1.21507 1.27251 1.18694 0.90094 0.91362 1.25082 0.94024 0.94178 1.00002 1.69688 1.32475 1.16593 1.34445 0.86388 0.78757 0.78044 0.83754 1.20427 1.20994 1.19623 1.23245 1.01631 0.96600 0.80692 1.21668 1.03174 0.93222 0.82619 1.21499 0.96021 0.97214 0.97410 0.89782 1.21695 1.01866 1.01847 0.94458 0.94178 0.94010 0.89766 0.90395 0.90638 0.91515 0.83439 0.91126 0.89867 0.90396 0.90248 0.76708 0.91965 0.90799 0.90955 0.88152 0.91094 0.91439 0.92225 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.86 9.62 -35.23 -0.34 -4.20 16 3 C 0.09 0.90 2.02 -26.69 -0.05 0.84 16 4 H 0.06 0.53 7.78 -51.94 -0.40 0.12 16 5 C -0.16 -1.67 5.70 -26.61 -0.15 -1.82 16 6 C 0.07 0.90 5.99 -3.71 -0.02 0.88 16 7 N -0.59 -8.09 2.98 -173.54 -0.52 -8.60 16 8 C 0.51 8.71 7.68 -11.58 -0.09 8.62 16 9 O -0.52 -9.31 13.32 5.50 0.07 -9.23 16 10 C 0.51 9.89 7.77 -11.58 -0.09 9.80 16 11 O -0.53 -10.82 13.51 5.50 0.07 -10.75 16 12 N -0.57 -11.86 3.33 -171.03 -0.57 -12.42 16 13 C 0.10 1.93 5.96 -2.53 -0.02 1.92 16 14 C -0.12 -2.45 6.23 -24.59 -0.15 -2.60 16 15 C 0.25 5.90 0.85 -89.94 -0.08 5.82 16 16 O -0.58 -14.51 13.09 -35.23 -0.46 -14.97 16 17 C -0.54 -13.78 8.13 -34.44 -0.28 -14.06 16 18 H 0.07 1.73 7.79 -52.48 -0.41 1.32 16 19 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 20 N -0.89 -23.18 11.02 55.43 0.61 -22.57 16 21 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 C 0.10 2.32 5.22 -3.06 -0.02 2.31 16 26 C 0.12 1.26 5.70 -3.94 -0.02 1.24 16 27 C -0.10 -1.00 2.61 -90.72 -0.24 -1.24 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 C -0.14 -1.12 9.04 37.16 0.34 -0.78 16 30 H 0.04 0.24 8.09 -51.92 -0.42 -0.18 16 31 H 0.04 0.28 7.85 -51.93 -0.41 -0.13 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.15 2.25 4.32 -54.76 -0.24 2.02 16 37 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 38 H 0.08 1.50 6.36 -51.93 -0.33 1.17 16 39 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.38 9.65 7.46 45.56 0.34 9.99 16 42 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 43 H 0.07 1.85 7.80 -51.93 -0.40 1.44 16 44 H 0.07 1.82 7.93 -51.93 -0.41 1.41 16 45 H 0.10 1.17 7.00 -51.93 -0.36 0.81 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.56 7.65 -51.93 -0.40 0.16 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -28.17 384.16 -7.44 -35.61 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.21 Total: 12.33 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 0.13 Total: 13.95 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.48 Total: -43.60 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.65 Total: -39.15 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.17 -7.44 -35.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326265247.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.638 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds