Wall clock time and date at job start Tue Mar 31 2020 23:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99488 * 2 1 4 4 H 1.08998 * 109.45509 * 30.03698 * 3 2 1 5 5 C 1.53042 * 109.46291 * 270.06877 * 3 2 1 6 6 C 1.53624 * 109.24426 * 178.49331 * 5 3 2 7 7 N 1.46930 * 108.54402 * 54.85668 * 6 5 3 8 8 C 1.34776 * 120.62905 * 126.36931 * 7 6 5 9 9 O 1.21348 * 119.99572 * 188.41875 * 8 7 6 10 10 C 1.49448 * 120.00191 * 8.42200 * 8 7 6 11 11 O 1.21348 * 119.99803 * 6.74158 * 10 8 7 12 12 N 1.34776 * 119.99854 * 186.75016 * 10 8 7 13 13 C 1.47022 * 125.65125 * 359.94831 * 12 10 8 14 14 C 1.54322 * 107.27311 * 181.10046 * 13 12 10 15 15 C 1.55152 * 102.94101 * 22.19694 * 14 13 12 16 16 O 1.42894 * 111.04024 * 82.58659 * 15 14 13 17 17 C 1.50705 * 111.00547 * 206.42449 * 15 14 13 18 18 H 1.08008 * 119.99489 * 353.65117 * 17 15 14 19 19 C 1.37871 * 120.00386 * 173.64900 * 17 15 14 20 20 N 1.31517 * 119.99959 * 0.27374 * 19 17 15 21 21 Si 1.86797 * 120.00288 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.47116 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47451 * 119.99965 * 21 19 17 24 24 H 1.48498 * 109.47426 * 240.00176 * 21 19 17 25 25 C 1.47422 * 125.64723 * 180.02562 * 12 10 8 26 26 C 1.46921 * 118.73465 * 306.09430 * 7 6 5 27 27 C 1.53046 * 109.45912 * 150.00434 * 3 2 1 28 28 H 1.09007 * 109.49123 * 301.33308 * 27 3 2 29 29 C 1.52991 * 109.52747 * 61.41655 * 27 3 2 30 30 H 1.09002 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47090 * 299.99445 * 1 2 3 32 32 H 1.08994 * 109.47450 * 60.00150 * 1 2 3 33 33 H 1.09007 * 109.49749 * 298.57043 * 5 3 2 34 34 H 1.09001 * 109.49481 * 58.63012 * 5 3 2 35 35 H 1.09000 * 109.74050 * 295.11833 * 6 5 3 36 36 H 1.09001 * 109.66199 * 174.55119 * 6 5 3 37 37 H 1.08997 * 109.88400 * 300.52548 * 13 12 10 38 38 H 1.09006 * 109.87793 * 61.52714 * 13 12 10 39 39 H 1.09003 * 110.71910 * 263.83613 * 14 13 12 40 40 H 1.08992 * 110.72207 * 140.55921 * 14 13 12 41 41 H 0.96701 * 114.00531 * 183.20222 * 16 15 14 42 42 H 0.96998 * 119.99774 * 359.72910 * 20 19 17 43 43 H 1.09003 * 110.37197 * 36.98721 * 25 12 10 44 44 H 1.09011 * 110.36574 * 274.66720 * 25 12 10 45 45 H 1.09002 * 109.58232 * 173.65036 * 26 7 6 46 46 H 1.08997 * 109.58979 * 293.92910 * 26 7 6 47 47 H 1.08994 * 109.47588 * 179.85702 * 29 27 3 48 48 H 1.08998 * 109.47047 * 299.85991 * 29 27 3 49 49 H 1.09005 * 109.47211 * 59.85308 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9990 0.5144 5 6 2.2159 1.7721 -1.4430 6 6 2.8056 3.1906 -1.4372 7 7 4.0300 3.1844 -0.6250 8 6 5.1912 3.6463 -1.1298 9 8 6.2239 3.4972 -0.5103 10 6 5.2068 4.3422 -2.4523 11 8 4.1628 4.6003 -3.0144 12 7 6.3804 4.6830 -3.0206 13 6 7.7127 4.4326 -2.4516 14 6 8.7483 5.0179 -3.4347 15 6 7.9220 6.0653 -4.2268 16 8 7.8300 7.2966 -3.5076 17 6 8.5041 6.2869 -5.5991 18 1 9.4407 5.8221 -5.8699 19 6 7.8411 7.0828 -6.5090 20 7 6.7033 7.6531 -6.1774 21 14 8.5630 7.3580 -8.2097 22 1 9.8440 6.6161 -8.3297 23 1 7.6096 6.8680 -9.2374 24 1 8.8093 8.8081 -8.4143 25 6 6.5408 5.3699 -4.3151 26 6 3.9630 2.6707 0.7498 27 6 3.3592 1.2631 0.7214 28 1 3.2149 0.9084 1.7420 29 6 4.3056 0.3163 -0.0192 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.9007 1.0928 -1.9508 34 1 1.2580 1.7791 -1.9631 35 1 2.0855 3.8869 -1.0074 36 1 3.0450 3.4924 -2.4569 37 1 7.8009 4.9253 -1.4833 38 1 7.8714 3.3602 -2.3373 39 1 9.1288 4.2433 -4.1005 40 1 9.5639 5.4986 -2.8947 41 1 7.2820 7.9653 -3.9409 42 1 6.3287 7.5105 -5.2942 43 1 5.7518 6.1093 -4.4526 44 1 6.5314 4.6477 -5.1316 45 1 4.9664 2.6294 1.1737 46 1 3.3375 3.3268 1.3550 47 1 5.2669 0.2886 0.4938 48 1 3.8755 -0.6851 -0.0392 49 1 4.4486 0.6706 -1.0401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326265254.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:17 Heat of formation + Delta-G solvation = -139.516750 kcal Electronic energy + Delta-G solvation = -31663.502465 eV Core-core repulsion = 27398.657212 eV Total energy + Delta-G solvation = -4264.845253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99688 -39.56655 -38.43284 -37.57212 -36.66157 -34.74445 -33.17309 -32.33019 -31.52020 -30.45319 -28.04738 -27.39218 -27.29758 -25.87922 -24.81856 -23.37784 -23.10430 -21.80728 -20.02655 -19.62047 -18.94400 -18.03987 -17.22406 -16.93790 -16.64676 -16.17874 -15.71377 -15.39107 -15.36147 -15.21359 -14.87813 -14.46352 -14.09766 -13.91135 -13.89531 -13.54029 -13.22570 -13.14368 -13.02720 -12.98533 -12.63499 -12.50358 -12.07714 -11.90062 -11.87906 -11.53787 -11.41446 -11.25151 -11.17551 -11.06717 -10.93490 -10.76314 -10.69135 -10.66343 -10.44982 -10.22893 -9.81797 -9.46825 -8.98658 -8.84894 -8.69336 -8.41703 -8.08826 -6.61575 -4.46212 1.63878 2.43128 3.33163 3.33567 3.34998 3.46372 3.49815 3.61854 4.28794 4.33800 4.47089 4.50940 4.70826 4.82135 4.93252 4.94262 5.02125 5.03547 5.13948 5.27547 5.29515 5.35316 5.37633 5.47960 5.51036 5.58155 5.61078 5.62017 5.77512 5.80619 5.86723 5.93480 5.99794 6.14826 6.19876 6.21524 6.32382 6.48832 6.60404 6.66248 6.79091 6.89306 7.00077 7.07933 7.62996 7.72774 7.89642 8.13910 8.26088 8.49684 8.88608 9.26275 10.67625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002704 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.294656 B =10350.691920 C =10956.675041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.093 3.907 4 H 0.061 0.939 5 C -0.158 4.158 6 C 0.072 3.928 7 N -0.586 5.586 8 C 0.514 3.486 9 O -0.515 6.515 10 C 0.510 3.490 11 O -0.528 6.528 12 N -0.571 5.571 13 C 0.109 3.891 14 C -0.113 4.113 15 C 0.228 3.772 16 O -0.581 6.581 17 C -0.611 4.611 18 H 0.064 0.936 19 C 0.029 3.971 20 N -0.903 5.903 21 Si 1.080 2.920 22 H -0.287 1.287 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.080 3.920 26 C 0.114 3.886 27 C -0.100 4.100 28 H 0.088 0.912 29 C -0.140 4.140 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.370 0.630 42 H 0.268 0.732 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -12.688 12.271 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.035 3.965 4 H 0.079 0.921 5 C -0.196 4.196 6 C -0.050 4.050 7 N -0.321 5.321 8 C 0.297 3.703 9 O -0.391 6.391 10 C 0.293 3.707 11 O -0.409 6.409 12 N -0.301 5.301 13 C -0.013 4.013 14 C -0.151 4.151 15 C 0.188 3.812 16 O -0.389 6.389 17 C -0.649 4.649 18 H 0.083 0.917 19 C -0.177 4.177 20 N -0.543 5.543 21 Si 0.907 3.093 22 H -0.213 1.213 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.042 4.042 26 C -0.009 4.009 27 C -0.119 4.119 28 H 0.106 0.894 29 C -0.198 4.198 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.558 -12.369 11.346 19.315 hybrid contribution -0.600 -0.340 1.193 1.378 sum -10.159 -12.709 12.539 20.541 Atomic orbital electron populations 1.22780 0.81301 1.02615 0.99935 1.87920 1.19374 1.27741 1.95066 1.22172 0.94205 0.84444 0.95692 0.92057 1.22577 1.02193 0.97575 0.97265 1.22946 0.85243 0.95587 1.01174 1.47877 1.09299 1.60741 1.14169 1.20234 0.83595 0.79560 0.86927 1.90720 1.31358 1.55813 1.61162 1.19664 0.83669 0.81528 0.85821 1.90442 1.30155 1.55696 1.64580 1.48614 1.05403 1.54243 1.21888 1.22203 0.81261 1.00140 0.97713 1.22624 0.97174 0.98071 0.97239 1.19953 0.88609 0.81783 0.90896 1.86286 1.74246 1.25820 1.52511 1.22335 1.10316 1.34994 0.97304 0.91738 1.26052 0.94657 0.92148 1.04810 1.70959 1.18334 1.41688 1.23283 0.83381 0.75242 0.76699 0.74007 1.21256 1.21059 1.21013 1.23745 1.01988 0.96437 0.81995 1.21753 1.03250 0.93252 0.82597 1.21561 0.94176 0.95715 1.00440 0.89422 1.21744 0.98330 0.99115 1.00572 0.89758 0.94168 0.94002 0.90270 0.90551 0.91445 0.83519 0.90706 0.91606 0.90067 0.90298 0.78025 0.91783 0.90223 0.90521 0.88116 0.91049 0.92618 0.91897 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.81 9.74 -35.23 -0.34 -4.15 16 3 C 0.09 0.88 2.25 -26.69 -0.06 0.82 16 4 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 5 C -0.16 -1.65 5.37 -26.39 -0.14 -1.79 16 6 C 0.07 0.89 6.01 -3.48 -0.02 0.86 16 7 N -0.59 -7.88 2.41 -173.01 -0.42 -8.30 16 8 C 0.51 8.61 7.69 -11.59 -0.09 8.53 16 9 O -0.52 -9.23 13.60 5.50 0.07 -9.15 16 10 C 0.51 9.85 7.77 -11.59 -0.09 9.76 16 11 O -0.53 -10.68 13.43 5.50 0.07 -10.61 16 12 N -0.57 -11.69 3.33 -171.04 -0.57 -12.26 16 13 C 0.11 2.07 5.51 -3.07 -0.02 2.05 16 14 C -0.11 -2.28 6.13 -24.90 -0.15 -2.44 16 15 C 0.23 5.42 0.83 -89.63 -0.07 5.34 16 16 O -0.58 -14.47 13.17 -35.23 -0.46 -14.93 16 17 C -0.61 -15.78 8.27 -34.44 -0.28 -16.06 16 18 H 0.06 1.65 7.79 -52.48 -0.41 1.25 16 19 C 0.03 0.74 5.27 -17.82 -0.09 0.65 16 20 N -0.90 -24.69 12.99 55.43 0.72 -23.97 16 21 Si 1.08 23.45 29.90 -169.99 -5.08 18.37 16 22 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.08 1.83 5.33 -2.54 -0.01 1.82 16 26 C 0.11 1.22 5.84 -3.71 -0.02 1.20 16 27 C -0.10 -0.96 2.94 -90.50 -0.27 -1.22 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 C -0.14 -1.51 8.57 37.15 0.32 -1.20 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.04 0.27 7.84 -51.93 -0.41 -0.13 16 33 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 34 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.15 2.21 4.30 -54.84 -0.24 1.97 16 37 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 38 H 0.07 1.14 7.84 -51.93 -0.41 0.73 16 39 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.37 9.26 6.63 45.56 0.30 9.56 16 42 H 0.27 7.20 3.68 -40.82 -0.15 7.05 16 43 H 0.08 1.98 6.25 -51.93 -0.32 1.66 16 44 H 0.08 1.80 8.03 -51.92 -0.42 1.38 16 45 H 0.10 1.17 7.01 -51.93 -0.36 0.80 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.67 7.73 -51.93 -0.40 0.26 16 49 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -29.44 375.92 -7.08 -36.52 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.82 Total: 13.19 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 0.09 Total: 9.63 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.27 Total: -44.52 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.66 Total: -38.85 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.44 -7.08 -36.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326265254.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.997 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds