Wall clock time and date at job start Tue Mar 31 2020 23:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58900 * 2 1 4 4 C 1.53192 * 109.58480 * 239.71337 * 2 1 3 5 5 H 1.08999 * 109.49772 * 174.89874 * 4 2 1 6 6 C 1.52997 * 109.49649 * 54.79962 * 4 2 1 7 7 O 1.42904 * 109.46754 * 175.16373 * 6 4 2 8 8 C 1.53044 * 109.31249 * 294.84882 * 4 2 1 9 9 C 1.53039 * 109.53616 * 298.63640 * 8 4 2 10 10 C 1.53188 * 109.31469 * 61.36769 * 9 8 4 11 11 N 1.46927 * 109.58521 * 120.42583 * 2 1 3 12 12 C 1.34782 * 120.63111 * 246.17560 * 11 2 1 13 13 O 1.21348 * 120.00004 * 173.08979 * 12 11 2 14 14 C 1.49450 * 119.99813 * 353.09255 * 12 11 2 15 15 O 1.21349 * 120.00009 * 353.33781 * 14 12 11 16 16 N 1.34777 * 119.99989 * 173.33911 * 14 12 11 17 17 C 1.47025 * 125.64849 * 359.68845 * 16 14 12 18 18 C 1.54331 * 107.26612 * 178.85219 * 17 16 14 19 19 C 1.55159 * 103.01883 * 338.14151 * 18 17 16 20 20 O 1.42900 * 111.00229 * 277.23116 * 19 18 17 21 21 C 1.50701 * 111.03829 * 153.39812 * 19 18 17 22 22 H 1.08001 * 119.99664 * 6.32460 * 21 19 18 23 23 C 1.37870 * 120.00288 * 186.33132 * 21 19 18 24 24 N 1.31521 * 120.00117 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 120.00151 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47244 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47377 * 119.99936 * 25 23 21 28 28 H 1.48503 * 109.47315 * 239.99961 * 25 23 21 29 29 C 1.47421 * 125.64815 * 179.97438 * 16 14 12 30 30 H 1.08996 * 109.47036 * 180.28888 * 1 2 3 31 31 H 1.09009 * 109.46749 * 300.28695 * 1 2 3 32 32 H 1.09002 * 109.46920 * 60.28293 * 1 2 3 33 33 H 1.08997 * 109.47493 * 295.16162 * 6 4 2 34 34 H 1.08996 * 109.47357 * 55.16486 * 6 4 2 35 35 H 0.96703 * 113.99771 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46119 * 178.61797 * 8 4 2 37 37 H 1.08996 * 109.44819 * 58.64638 * 8 4 2 38 38 H 1.09002 * 109.49907 * 301.41307 * 9 8 4 39 39 H 1.09004 * 109.51959 * 181.33307 * 9 8 4 40 40 H 1.08992 * 109.58837 * 65.14994 * 10 9 8 41 41 H 1.09004 * 109.58779 * 185.57917 * 10 9 8 42 42 H 1.09003 * 109.88031 * 298.39617 * 17 16 14 43 43 H 1.08994 * 109.87742 * 59.55961 * 17 16 14 44 44 H 1.08999 * 110.85140 * 219.67568 * 18 17 16 45 45 H 1.09003 * 110.66708 * 96.51903 * 18 17 16 46 46 H 0.96705 * 113.99726 * 173.64890 * 20 19 18 47 47 H 0.96995 * 119.99862 * 180.02562 * 24 23 21 48 48 H 1.08996 * 110.36957 * 322.93538 * 29 16 14 49 49 H 1.09008 * 110.36599 * 85.25210 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 3.1297 -0.6489 -1.2921 6 6 1.4314 -0.0934 -2.4967 7 8 1.9959 -0.6975 -3.6623 8 6 1.6414 -2.2027 -1.1728 9 6 2.2799 -2.8465 0.0601 10 6 1.7691 -2.1426 1.3211 11 7 2.0225 -0.7010 1.1936 12 6 2.6941 -0.0343 2.1534 13 8 2.9861 -0.5939 3.1898 14 6 3.0791 1.3940 1.9411 15 8 2.8958 1.9179 0.8620 16 7 3.6299 2.1003 2.9482 17 6 3.9007 1.5942 4.3018 18 6 4.5583 2.7419 5.0969 19 6 5.1305 3.6566 3.9819 20 8 6.3988 3.1791 3.5284 21 6 5.2310 5.0848 4.4522 22 1 5.0190 5.3302 5.4824 23 6 5.5934 6.0781 3.5674 24 7 5.8519 5.7792 2.3130 25 14 5.7173 7.8484 4.1503 26 1 5.3782 7.9191 5.5943 27 1 7.1021 8.3426 3.9418 28 1 4.7695 8.6914 3.3779 29 6 4.0552 3.5101 2.8768 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 0.3528 -0.2498 -2.4927 34 1 1.6435 0.9757 -2.5027 35 1 1.6533 -0.3429 -4.4942 36 1 1.9843 -2.7178 -2.0701 37 1 0.5565 -2.2799 -1.1019 38 1 3.3639 -2.7475 0.0020 39 1 2.0126 -3.9025 0.0992 40 1 0.6987 -2.3173 1.4289 41 1 2.2944 -2.5301 2.1941 42 1 2.9674 1.2967 4.7799 43 1 4.5808 0.7440 4.2504 44 1 5.3580 2.3640 5.7339 45 1 3.8146 3.2751 5.6892 46 1 6.7508 3.6603 2.7670 47 1 6.1072 6.4780 1.6906 48 1 4.4841 3.7278 1.8987 49 1 3.2122 4.1713 3.0780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326545591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:16 Heat of formation + Delta-G solvation = -149.516447 kcal Electronic energy + Delta-G solvation = -31873.658033 eV Core-core repulsion = 27608.379161 eV Total energy + Delta-G solvation = -4265.278873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93890 -39.21664 -38.03316 -37.35459 -36.48310 -34.36957 -32.88975 -32.66608 -32.27622 -30.29350 -28.52212 -27.94805 -26.53152 -25.63233 -24.35922 -23.24895 -22.56169 -21.16319 -19.87161 -19.61823 -18.55973 -17.72134 -17.25394 -16.83072 -16.50431 -15.82546 -15.56144 -15.26367 -15.16093 -15.03691 -14.59269 -14.54729 -14.33543 -13.82455 -13.46612 -13.28017 -13.10155 -13.01111 -12.91688 -12.67035 -12.57465 -12.35382 -12.18874 -11.68985 -11.66912 -11.54434 -11.45148 -11.09127 -11.05125 -10.87731 -10.85026 -10.62997 -10.55925 -10.48498 -10.26975 -10.16858 -10.01774 -9.39710 -8.84321 -8.73056 -8.64110 -8.40724 -7.96543 -6.32698 -4.42183 1.74329 2.54685 3.17232 3.26519 3.30026 3.52086 3.64445 4.10613 4.23328 4.43057 4.60123 4.76200 4.79409 4.95091 4.99581 5.05726 5.16688 5.24462 5.29546 5.39787 5.46123 5.50115 5.58448 5.63776 5.74327 5.75897 5.78956 5.80573 5.91268 5.95978 5.99241 6.03483 6.18018 6.28710 6.33884 6.44389 6.48519 6.70153 6.79648 6.86231 7.13710 7.22605 7.28095 7.46387 7.69463 7.78677 7.97618 8.05579 8.39763 8.62490 9.25508 9.34106 10.74539 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003127 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.951870 B = 8953.010168 C = 9957.563236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.172 0.828 4 C -0.091 4.091 5 H 0.081 0.919 6 C 0.082 3.918 7 O -0.573 6.573 8 C -0.113 4.113 9 C -0.134 4.134 10 C 0.107 3.893 11 N -0.580 5.580 12 C 0.512 3.488 13 O -0.519 6.519 14 C 0.511 3.489 15 O -0.527 6.527 16 N -0.569 5.569 17 C 0.109 3.891 18 C -0.121 4.121 19 C 0.248 3.752 20 O -0.581 6.581 21 C -0.536 4.536 22 H 0.069 0.931 23 C 0.071 3.929 24 N -0.894 5.894 25 Si 0.904 3.096 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.091 3.909 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.377 0.623 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.381 0.619 47 H 0.270 0.730 48 H 0.092 0.908 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -12.792 -7.196 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 H 0.187 0.813 4 C -0.111 4.111 5 H 0.099 0.901 6 C 0.004 3.996 7 O -0.379 6.379 8 C -0.151 4.151 9 C -0.172 4.172 10 C -0.015 4.015 11 N -0.313 5.313 12 C 0.295 3.705 13 O -0.394 6.394 14 C 0.294 3.706 15 O -0.408 6.408 16 N -0.299 5.299 17 C -0.013 4.013 18 C -0.159 4.159 19 C 0.208 3.792 20 O -0.389 6.389 21 C -0.574 4.574 22 H 0.087 0.913 23 C -0.132 4.132 24 N -0.532 5.532 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.030 4.030 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.224 0.776 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.231 0.769 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.728 -13.537 -6.414 18.425 hybrid contribution -0.307 1.540 -0.772 1.750 sum -11.034 -11.997 -7.186 17.814 Atomic orbital electron populations 1.22223 0.95529 1.01900 1.02392 1.22868 0.94277 1.02619 0.82465 0.81269 1.21400 1.01706 0.95226 0.92731 0.90053 1.22219 0.96059 0.96316 0.84974 1.86462 1.69378 1.65882 1.16141 1.21566 1.00324 0.95187 0.97979 1.21918 1.01351 0.99368 0.94548 1.21671 1.00905 0.79743 0.99196 1.47952 1.53970 1.08824 1.20587 1.20282 0.78636 0.88002 0.83547 1.90715 1.53505 1.69465 1.25704 1.19632 0.80264 0.86472 0.84238 1.90224 1.55808 1.70663 1.24137 1.48710 1.55479 1.14465 1.11250 1.22187 0.99957 0.97713 0.81455 1.22712 0.99616 0.95573 0.98027 1.19645 0.80591 0.91386 0.87624 1.86140 1.36820 1.62552 1.53385 1.21499 1.47945 0.91024 0.96957 0.91321 1.25084 0.93574 0.99877 0.94698 1.69717 1.45924 1.34242 1.03334 0.86337 0.77883 0.83583 0.79042 1.19553 1.20726 1.20778 1.23525 0.98798 0.76470 1.04187 0.92567 0.92373 0.91296 0.93374 0.92931 0.77601 0.91093 0.91870 0.91420 0.90684 0.91337 0.88966 0.91850 0.90800 0.90459 0.90347 0.76932 0.92008 0.88960 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.53 37.16 0.32 -1.38 16 2 C 0.08 1.03 2.63 -67.60 -0.18 0.85 16 3 H 0.17 2.70 3.79 -56.72 -0.22 2.48 16 4 C -0.09 -1.08 2.36 -90.50 -0.21 -1.29 16 5 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 6 C 0.08 0.83 5.77 37.16 0.21 1.04 16 7 O -0.57 -5.79 13.17 -35.23 -0.46 -6.25 16 8 C -0.11 -1.14 4.87 -26.69 -0.13 -1.27 16 9 C -0.13 -1.34 6.08 -26.61 -0.16 -1.51 16 10 C 0.11 1.23 6.00 -3.71 -0.02 1.21 16 11 N -0.58 -8.26 2.68 -165.73 -0.44 -8.70 16 12 C 0.51 8.96 7.70 -11.58 -0.09 8.87 16 13 O -0.52 -9.68 13.62 5.50 0.07 -9.60 16 14 C 0.51 10.08 7.80 -11.59 -0.09 9.99 16 15 O -0.53 -10.80 13.36 5.50 0.07 -10.73 16 16 N -0.57 -11.83 3.33 -171.04 -0.57 -12.40 16 17 C 0.11 2.10 5.51 -3.06 -0.02 2.08 16 18 C -0.12 -2.44 6.13 -24.89 -0.15 -2.60 16 19 C 0.25 5.90 0.87 -89.63 -0.08 5.82 16 20 O -0.58 -14.62 13.16 -35.23 -0.46 -15.08 16 21 C -0.54 -13.61 8.27 -34.44 -0.28 -13.90 16 22 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 23 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 24 N -0.89 -23.12 10.69 55.43 0.59 -22.52 16 25 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.09 2.10 5.38 -2.54 -0.01 2.09 16 30 H 0.06 0.52 5.72 -51.93 -0.30 0.22 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 33 H 0.05 0.40 6.66 -51.93 -0.35 0.05 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.38 2.07 9.12 45.56 0.42 2.48 16 36 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 41 H 0.09 1.14 7.05 -51.93 -0.37 0.78 16 42 H 0.06 1.11 7.85 -51.93 -0.41 0.71 16 43 H 0.07 1.45 7.43 -51.93 -0.39 1.07 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 46 H 0.38 9.76 7.56 45.56 0.34 10.11 16 47 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 48 H 0.09 2.36 7.33 -51.93 -0.38 1.98 16 49 H 0.07 1.62 8.03 -51.92 -0.42 1.20 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -28.96 375.82 -7.57 -36.53 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.02 Total: 16.51 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.99 Total: 11.72 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.42 Total: -43.62 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.78 Total: -41.67 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.96 -7.57 -36.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326545591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.991 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds