Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.58900 * 2 1 4 4 C 1.53192 * 109.58480 * 239.71337 * 2 1 3 5 5 H 1.08999 * 109.49772 * 174.89874 * 4 2 1 6 6 C 1.52997 * 109.49649 * 54.79962 * 4 2 1 7 7 O 1.42904 * 109.46754 * 175.16373 * 6 4 2 8 8 C 1.53044 * 109.31249 * 294.84882 * 4 2 1 9 9 C 1.53039 * 109.53616 * 298.63640 * 8 4 2 10 10 C 1.53188 * 109.31469 * 61.36769 * 9 8 4 11 11 N 1.46927 * 109.58521 * 120.42583 * 2 1 3 12 12 C 1.34782 * 120.63111 * 246.17560 * 11 2 1 13 13 O 1.21348 * 120.00004 * 173.08979 * 12 11 2 14 14 C 1.49450 * 119.99813 * 353.09255 * 12 11 2 15 15 O 1.21349 * 120.00009 * 353.33781 * 14 12 11 16 16 N 1.34777 * 119.99989 * 173.33911 * 14 12 11 17 17 C 1.47025 * 125.64849 * 359.68845 * 16 14 12 18 18 C 1.54331 * 107.26612 * 178.85219 * 17 16 14 19 19 C 1.55159 * 103.01883 * 338.14151 * 18 17 16 20 20 O 1.42900 * 111.00229 * 277.23116 * 19 18 17 21 21 C 1.50701 * 111.03829 * 153.39812 * 19 18 17 22 22 H 1.08001 * 119.99664 * 6.32460 * 21 19 18 23 23 C 1.37870 * 120.00288 * 186.33132 * 21 19 18 24 24 N 1.31521 * 120.00117 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 120.00151 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47244 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47377 * 119.99936 * 25 23 21 28 28 H 1.48503 * 109.47315 * 239.99961 * 25 23 21 29 29 C 1.47421 * 125.64815 * 179.97438 * 16 14 12 30 30 H 1.08996 * 109.47036 * 180.28888 * 1 2 3 31 31 H 1.09009 * 109.46749 * 300.28695 * 1 2 3 32 32 H 1.09002 * 109.46920 * 60.28293 * 1 2 3 33 33 H 1.08997 * 109.47493 * 295.16162 * 6 4 2 34 34 H 1.08996 * 109.47357 * 55.16486 * 6 4 2 35 35 H 0.96703 * 113.99771 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.46119 * 178.61797 * 8 4 2 37 37 H 1.08996 * 109.44819 * 58.64638 * 8 4 2 38 38 H 1.09002 * 109.49907 * 301.41307 * 9 8 4 39 39 H 1.09004 * 109.51959 * 181.33307 * 9 8 4 40 40 H 1.08992 * 109.58837 * 65.14994 * 10 9 8 41 41 H 1.09004 * 109.58779 * 185.57917 * 10 9 8 42 42 H 1.09003 * 109.88031 * 298.39617 * 17 16 14 43 43 H 1.08994 * 109.87742 * 59.55961 * 17 16 14 44 44 H 1.08999 * 110.85140 * 219.67568 * 18 17 16 45 45 H 1.09003 * 110.66708 * 96.51903 * 18 17 16 46 46 H 0.96705 * 113.99726 * 173.64890 * 20 19 18 47 47 H 0.96995 * 119.99862 * 180.02562 * 24 23 21 48 48 H 1.08996 * 110.36957 * 322.93538 * 29 16 14 49 49 H 1.09008 * 110.36599 * 85.25210 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 3.1297 -0.6489 -1.2921 6 6 1.4314 -0.0934 -2.4967 7 8 1.9959 -0.6975 -3.6623 8 6 1.6414 -2.2027 -1.1728 9 6 2.2799 -2.8465 0.0601 10 6 1.7691 -2.1426 1.3211 11 7 2.0225 -0.7010 1.1936 12 6 2.6941 -0.0343 2.1534 13 8 2.9861 -0.5939 3.1898 14 6 3.0791 1.3940 1.9411 15 8 2.8958 1.9179 0.8620 16 7 3.6299 2.1003 2.9482 17 6 3.9007 1.5942 4.3018 18 6 4.5583 2.7419 5.0969 19 6 5.1305 3.6566 3.9819 20 8 6.3988 3.1791 3.5284 21 6 5.2310 5.0848 4.4522 22 1 5.0190 5.3302 5.4824 23 6 5.5934 6.0781 3.5674 24 7 5.8519 5.7792 2.3130 25 14 5.7173 7.8484 4.1503 26 1 5.3782 7.9191 5.5943 27 1 7.1021 8.3426 3.9418 28 1 4.7695 8.6914 3.3779 29 6 4.0552 3.5101 2.8768 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 0.3528 -0.2498 -2.4927 34 1 1.6435 0.9757 -2.5027 35 1 1.6533 -0.3429 -4.4942 36 1 1.9843 -2.7178 -2.0701 37 1 0.5565 -2.2799 -1.1019 38 1 3.3639 -2.7475 0.0020 39 1 2.0126 -3.9025 0.0992 40 1 0.6987 -2.3173 1.4289 41 1 2.2944 -2.5301 2.1941 42 1 2.9674 1.2967 4.7799 43 1 4.5808 0.7440 4.2504 44 1 5.3580 2.3640 5.7339 45 1 3.8146 3.2751 5.6892 46 1 6.7508 3.6603 2.7670 47 1 6.1072 6.4780 1.6906 48 1 4.4841 3.7278 1.8987 49 1 3.2122 4.1713 3.0780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326545591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = -172.310846 kcal Electronic energy + Delta-G solvation = -31874.646473 eV Core-core repulsion = 27608.379161 eV Total energy + Delta-G solvation = -4266.267312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26121 -40.59340 -39.30457 -39.00570 -37.39222 -36.13805 -34.24986 -33.96898 -33.57415 -31.99668 -29.75785 -29.44040 -27.87746 -26.96560 -25.69181 -24.47794 -23.81679 -22.34995 -21.55739 -20.97834 -19.75558 -19.15055 -18.61038 -18.13250 -17.97957 -17.27633 -17.10722 -16.79022 -16.31539 -16.21582 -16.19021 -15.72027 -15.38283 -15.11076 -14.88393 -14.69974 -14.63242 -14.32546 -14.06150 -13.88967 -13.80665 -13.53500 -13.42392 -13.31680 -13.19607 -12.86936 -12.65250 -12.59774 -12.40048 -12.39162 -12.22842 -12.12413 -12.02321 -11.79535 -11.43734 -11.38183 -11.18080 -10.83309 -10.68884 -10.40992 -10.03103 -9.85933 -9.63778 -8.25733 -6.42593 0.27692 1.20026 1.42536 1.46298 1.56726 2.04572 2.28167 2.40257 2.99597 3.02993 3.35352 3.65640 3.74576 3.86962 3.94596 4.02560 4.12711 4.15133 4.16232 4.28974 4.29963 4.41612 4.46856 4.53729 4.62242 4.66018 4.70753 4.73810 4.76955 4.89458 4.93238 4.99696 5.02174 5.04190 5.05277 5.12909 5.17767 5.30293 5.32127 5.41789 5.43819 5.50969 5.73885 5.98393 6.04611 6.28533 6.59549 6.67551 6.87650 6.92761 7.25756 7.34278 8.80165 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003127 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.951870 B = 8953.010168 C = 9957.563236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 H 0.141 0.859 4 C -0.091 4.091 5 H 0.046 0.954 6 C 0.086 3.914 7 O -0.590 6.590 8 C -0.106 4.106 9 C -0.129 4.129 10 C 0.103 3.897 11 N -0.570 5.570 12 C 0.512 3.488 13 O -0.535 6.535 14 C 0.503 3.497 15 O -0.541 6.541 16 N -0.579 5.579 17 C 0.118 3.882 18 C -0.115 4.115 19 C 0.232 3.768 20 O -0.588 6.588 21 C -0.554 4.554 22 H 0.070 0.930 23 C 0.029 3.971 24 N -0.914 5.914 25 Si 0.965 3.035 26 H -0.265 1.265 27 H -0.282 1.282 28 H -0.280 1.280 29 C 0.108 3.892 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.374 0.626 47 H 0.270 0.730 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 -14.174 -7.339 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 H 0.157 0.843 4 C -0.111 4.111 5 H 0.064 0.936 6 C 0.008 3.992 7 O -0.398 6.398 8 C -0.143 4.143 9 C -0.167 4.167 10 C -0.018 4.018 11 N -0.302 5.302 12 C 0.294 3.706 13 O -0.412 6.412 14 C 0.287 3.713 15 O -0.423 6.423 16 N -0.310 5.310 17 C -0.004 4.004 18 C -0.152 4.152 19 C 0.192 3.808 20 O -0.396 6.396 21 C -0.592 4.592 22 H 0.088 0.912 23 C -0.172 4.172 24 N -0.553 5.553 25 Si 0.790 3.210 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.206 1.206 29 C -0.014 4.014 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.223 0.777 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.892 -14.950 -6.592 20.813 hybrid contribution 0.352 1.935 -0.849 2.142 sum -12.540 -13.014 -7.441 19.545 Atomic orbital electron populations 1.22182 0.92792 1.03398 1.02934 1.22774 0.96308 1.01009 0.82488 0.84328 1.21347 0.99668 0.96910 0.93126 0.93578 1.22159 0.97288 0.95433 0.84330 1.86408 1.70058 1.66207 1.17164 1.21532 1.01576 0.93336 0.97849 1.21919 1.00101 1.00943 0.93737 1.21953 1.02565 0.77540 0.99692 1.48099 1.52172 1.10075 1.19870 1.19822 0.79560 0.86887 0.84325 1.90699 1.54768 1.69306 1.26442 1.20260 0.79615 0.87661 0.83737 1.90278 1.55912 1.71528 1.24559 1.48751 1.56210 1.13698 1.12331 1.22170 1.00700 0.96907 0.80624 1.22719 1.00062 0.95231 0.97233 1.19883 0.80087 0.91916 0.88933 1.86134 1.37764 1.62608 1.53084 1.21771 1.48262 0.92073 0.97116 0.91214 1.25795 0.93254 1.03391 0.94762 1.69827 1.46244 1.35158 1.04114 0.85396 0.77595 0.79207 0.78762 1.18916 1.20749 1.20598 1.23061 0.98126 0.78006 1.02223 0.90442 0.93282 0.89440 0.90628 0.93999 0.75283 0.91082 0.89614 0.93438 0.87647 0.88544 0.89824 0.89802 0.91354 0.89744 0.88791 0.77726 0.92036 0.92187 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.53 71.98 0.61 -2.21 16 2 C 0.08 1.91 2.63 44.98 0.12 2.03 16 3 H 0.14 4.52 3.79 -78.24 -0.30 4.22 16 4 C -0.09 -2.07 2.36 -10.72 -0.03 -2.09 16 5 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 6 C 0.09 1.59 5.77 71.98 0.42 2.00 16 7 O -0.59 -10.94 13.17 -148.98 -1.96 -12.90 16 8 C -0.11 -1.83 4.87 30.62 0.15 -1.68 16 9 C -0.13 -2.28 6.08 30.67 0.19 -2.09 16 10 C 0.10 2.14 6.00 86.36 0.52 2.66 16 11 N -0.57 -15.74 2.68 -796.59 -2.13 -17.88 16 12 C 0.51 17.95 7.70 87.27 0.67 18.62 16 13 O -0.53 -19.79 13.62 -3.24 -0.04 -19.84 16 14 C 0.50 20.45 7.80 87.27 0.68 21.13 16 15 O -0.54 -23.20 13.36 -3.25 -0.04 -23.25 16 16 N -0.58 -24.69 3.33 -813.40 -2.71 -27.40 16 17 C 0.12 4.51 5.51 86.73 0.48 4.99 16 18 C -0.11 -4.58 6.13 31.79 0.19 -4.39 16 19 C 0.23 11.26 0.87 -10.15 -0.01 11.25 16 20 O -0.59 -30.53 13.16 -148.98 -1.96 -32.49 16 21 C -0.55 -28.43 8.27 25.60 0.21 -28.22 16 22 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 23 C 0.03 1.49 5.29 84.65 0.45 1.94 16 24 N -0.91 -48.58 10.69 21.45 0.23 -48.35 16 25 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.11 5.17 5.38 86.85 0.47 5.64 16 30 H 0.08 1.09 5.72 -2.39 -0.01 1.08 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.09 1.28 6.47 -2.39 -0.02 1.26 16 33 H 0.08 0.99 6.66 -2.39 -0.02 0.97 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.40 3.58 9.12 -74.06 -0.68 2.91 16 36 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 37 H 0.09 1.14 6.50 -2.39 -0.02 1.13 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.10 1.53 7.48 -2.39 -0.02 1.51 16 41 H 0.08 1.93 7.05 -2.39 -0.02 1.92 16 42 H 0.08 2.86 7.85 -2.39 -0.02 2.84 16 43 H 0.07 2.69 7.43 -2.39 -0.02 2.67 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 46 H 0.37 20.06 7.56 -74.05 -0.56 19.50 16 47 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.06 3.24 7.33 -2.39 -0.02 3.22 16 49 H 0.06 2.89 8.03 -2.38 -0.02 2.87 16 Total: -1.00 -64.14 375.82 -2.00 -66.14 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -0.53 Total: 43.40 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 5.12 Total: 29.57 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -4.61 Total: -93.63 kcal Atomic # 8 Polarization: -84.46 SS G_CDS: -4.01 Total: -88.47 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -64.14 -2.00 -66.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326545591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.172 kcal (2) G-P(sol) polarization free energy of solvation -64.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds