Wall clock time and date at job start Tue Mar 31 2020 23:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.51320 * 2 1 4 4 C 1.53297 * 109.51251 * 239.90175 * 2 1 3 5 5 N 1.47152 * 108.38428 * 187.77546 * 4 2 1 6 6 C 1.34772 * 120.98205 * 230.50918 * 5 4 2 7 7 O 1.21354 * 120.00156 * 181.49865 * 6 5 4 8 8 C 1.49450 * 120.00160 * 1.22607 * 6 5 4 9 9 O 1.21351 * 119.99505 * 353.80679 * 8 6 5 10 10 N 1.34774 * 120.00494 * 173.80716 * 8 6 5 11 11 C 1.47025 * 125.64651 * 0.02727 * 10 8 6 12 12 C 1.54316 * 107.27343 * 181.02081 * 11 10 8 13 13 C 1.55162 * 102.93952 * 22.19197 * 12 11 10 14 14 O 1.42903 * 111.00374 * 82.57367 * 13 12 11 15 15 C 1.50706 * 111.00254 * 206.38706 * 13 12 11 16 16 H 1.07996 * 120.00108 * 359.97438 * 15 13 12 17 17 C 1.37878 * 119.99894 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00001 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99904 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47031 * 89.99902 * 19 17 15 21 21 H 1.48497 * 109.46909 * 209.99435 * 19 17 15 22 22 H 1.48498 * 109.47039 * 329.99788 * 19 17 15 23 23 C 1.47422 * 125.65306 * 179.71559 * 10 8 6 24 24 C 1.47154 * 118.03466 * 50.78866 * 5 4 2 25 25 C 1.53720 * 108.15932 * 309.15304 * 24 5 4 26 26 C 1.52999 * 109.65906 * 292.57290 * 25 24 5 27 27 C 1.53004 * 109.48145 * 172.40127 * 25 24 5 28 28 O 1.42963 * 109.51007 * 120.15455 * 2 1 3 29 29 H 1.08994 * 109.47197 * 180.09725 * 1 2 3 30 30 H 1.09000 * 109.46651 * 300.10050 * 1 2 3 31 31 H 1.08997 * 109.46819 * 60.09883 * 1 2 3 32 32 H 1.08995 * 109.68095 * 68.04728 * 4 2 1 33 33 H 1.09002 * 109.70953 * 307.51500 * 4 2 1 34 34 H 1.09002 * 109.88197 * 300.44341 * 11 10 8 35 35 H 1.09000 * 109.88239 * 61.44741 * 11 10 8 36 36 H 1.08995 * 110.72493 * 140.55368 * 12 11 10 37 37 H 1.08997 * 110.72423 * 263.65476 * 12 11 10 38 38 H 0.96699 * 113.99911 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00354 * 180.02562 * 18 17 15 40 40 H 1.08995 * 110.36570 * 274.75301 * 23 10 8 41 41 H 1.09003 * 110.36132 * 37.07048 * 23 10 8 42 42 H 1.08998 * 109.68661 * 68.93551 * 24 5 4 43 43 H 1.09007 * 109.68131 * 189.49354 * 24 5 4 44 44 H 1.08991 * 109.47087 * 179.74067 * 26 25 24 45 45 H 1.08993 * 109.47450 * 299.74542 * 26 25 24 46 46 H 1.09008 * 109.46893 * 59.74411 * 26 25 24 47 47 H 1.08997 * 109.47226 * 300.36539 * 27 25 24 48 48 H 1.08993 * 109.47125 * 60.36534 * 27 25 24 49 49 H 1.09000 * 109.46704 * 180.36470 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7246 -1.2501 5 7 3.5012 -0.8757 -1.1340 6 6 4.3193 -0.5033 -2.1382 7 8 5.5181 -0.6609 -2.0344 8 6 3.7497 0.0983 -3.3821 9 8 2.5471 0.1486 -3.5360 10 7 4.5717 0.5848 -4.3329 11 6 6.0408 0.5875 -4.2760 12 6 6.5481 1.2645 -5.5666 13 6 5.3292 2.1128 -6.0161 14 8 5.2857 3.3580 -5.3162 15 6 5.3457 2.3346 -7.5067 16 1 6.1427 1.9195 -8.1056 17 6 4.3437 3.0683 -8.1056 18 7 3.3734 3.5742 -7.3762 19 14 4.3644 3.3438 -9.9531 20 1 3.6226 2.2470 -10.6255 21 1 3.7183 4.6434 -10.2670 22 1 5.7688 3.3599 -10.4354 23 6 4.1468 1.1968 -5.6050 24 6 4.0403 -1.4512 0.1084 25 6 3.4312 -0.6861 1.2945 26 6 3.9531 0.7521 1.3018 27 6 3.8212 -1.3779 2.6023 28 8 2.0075 -0.6769 1.1652 29 1 -0.3633 -1.0276 0.0017 30 1 -0.3632 0.5154 0.8891 31 1 -0.3633 0.5123 -0.8909 32 1 1.8030 -0.1389 -2.1377 33 1 1.5758 -1.7072 -1.3223 34 1 6.3771 1.1503 -3.4052 35 1 6.4115 -0.4361 -4.2213 36 1 7.4057 1.9033 -5.3556 37 1 6.8009 0.5184 -6.3199 38 1 4.5409 3.9227 -5.5642 39 1 2.6682 4.0901 -7.7976 40 1 3.9799 0.4275 -6.3589 41 1 3.2428 1.7878 -5.4583 42 1 3.7718 -2.5057 0.1713 43 1 5.1252 -1.3467 0.1209 44 1 3.5159 1.2929 2.1411 45 1 5.0385 0.7443 1.4004 46 1 3.6765 1.2437 0.3691 47 1 3.4507 -2.4030 2.5956 48 1 4.9067 -1.3846 2.7002 49 1 3.3839 -0.8390 3.4428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327023735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:08 Heat of formation + Delta-G solvation = -137.691715 kcal Electronic energy + Delta-G solvation = -31979.859381 eV Core-core repulsion = 27715.093267 eV Total energy + Delta-G solvation = -4264.766114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02629 -39.60074 -38.17587 -37.42131 -35.06332 -34.52882 -34.11132 -32.22100 -30.88815 -30.32973 -28.11649 -27.69655 -27.42654 -26.60109 -25.43243 -23.37565 -22.11751 -21.66738 -19.83003 -19.63840 -19.02449 -17.35387 -17.03757 -16.90493 -16.65709 -16.07080 -15.77952 -15.18925 -15.15436 -14.84541 -14.65817 -14.40765 -14.27019 -13.74621 -13.35380 -13.18370 -13.08572 -12.90102 -12.63998 -12.57109 -12.43738 -12.36115 -12.17295 -12.07043 -12.05372 -11.69487 -11.59217 -11.57951 -11.22919 -11.11171 -10.95286 -10.84036 -10.61100 -10.54272 -10.45185 -10.23897 -10.11015 -9.45793 -8.84013 -8.74906 -8.63621 -8.48178 -7.97549 -6.36525 -4.45847 1.69106 2.44041 3.16343 3.24448 3.27302 3.41407 3.47762 3.66002 4.20391 4.35656 4.49599 4.61172 4.70846 4.81804 4.91171 4.98876 5.16833 5.22394 5.34668 5.37925 5.42014 5.44915 5.52684 5.59816 5.63527 5.70650 5.73939 5.80535 5.83227 5.86498 5.95809 5.98841 6.01289 6.10967 6.22976 6.28076 6.44568 6.67259 6.73861 6.80242 7.07226 7.10077 7.13389 7.24302 7.67091 7.71174 7.91910 7.99058 8.34173 8.58105 9.24094 9.38768 10.70857 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.002980 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.585428 B = 9393.471077 C =10084.504153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.066 0.934 4 C 0.026 3.974 5 N -0.588 5.588 6 C 0.512 3.488 7 O -0.518 6.518 8 C 0.511 3.489 9 O -0.529 6.529 10 N -0.567 5.567 11 C 0.110 3.890 12 C -0.122 4.122 13 C 0.250 3.750 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.088 3.912 24 C 0.087 3.913 25 C 0.101 3.899 26 C -0.176 4.176 27 C -0.135 4.135 28 O -0.373 6.373 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -7.959 15.524 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.095 4.095 5 N -0.322 5.322 6 C 0.295 3.705 7 O -0.393 6.393 8 C 0.294 3.706 9 O -0.410 6.410 10 N -0.297 5.297 11 C -0.012 4.012 12 C -0.160 4.160 13 C 0.209 3.791 14 O -0.393 6.393 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.032 4.032 24 C -0.036 4.036 25 C 0.061 3.939 26 C -0.234 4.234 27 C -0.192 4.192 28 O -0.292 6.292 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.518 -8.247 15.915 17.989 hybrid contribution -0.495 0.350 -1.304 1.438 sum -2.013 -7.897 14.611 16.730 Atomic orbital electron populations 1.21697 0.92170 1.03051 1.02878 1.22554 0.95516 0.95889 0.84719 0.91639 1.23968 0.78202 1.03840 1.03465 1.47929 1.07902 1.61017 1.15330 1.20305 0.86419 0.79165 0.84577 1.90715 1.14434 1.53956 1.80235 1.19578 0.86279 0.80639 0.84083 1.90274 1.13967 1.59212 1.77568 1.48678 1.08088 1.54299 1.18675 1.22181 0.78786 1.00675 0.99599 1.22721 0.99445 0.98693 0.95111 1.19631 0.87706 0.81391 0.90363 1.86090 1.54511 1.31107 1.67543 1.21502 1.10042 1.34384 0.91577 0.91284 1.25091 0.94509 0.94318 0.99322 1.69550 1.12524 1.35162 1.36279 0.86359 0.78466 0.77763 0.84089 1.20370 1.20947 1.19630 1.23612 1.02433 0.96559 0.80620 1.22483 1.00850 0.97377 0.82881 1.21907 0.81701 0.95307 0.94980 1.22370 1.02018 0.96159 1.02820 1.21712 1.01601 1.00940 0.94983 1.87961 1.20057 1.77246 1.43983 0.91740 0.91706 0.90371 0.81752 0.91045 0.91320 0.91403 0.90441 0.90335 0.76163 0.91796 0.91232 0.89398 0.90514 0.88067 0.91558 0.91246 0.91973 0.91604 0.90789 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.57 37.16 0.36 -1.03 16 2 C 0.07 0.86 3.01 -26.58 -0.08 0.78 16 3 H 0.07 0.84 6.26 -51.93 -0.32 0.51 16 4 C 0.03 0.36 5.67 -3.53 -0.02 0.34 16 5 N -0.59 -8.59 2.53 -172.52 -0.44 -9.03 16 6 C 0.51 8.90 7.73 -11.59 -0.09 8.81 16 7 O -0.52 -9.48 13.64 5.49 0.07 -9.41 16 8 C 0.51 10.02 7.84 -11.59 -0.09 9.93 16 9 O -0.53 -10.76 13.30 5.50 0.07 -10.69 16 10 N -0.57 -11.71 3.32 -170.90 -0.57 -12.27 16 11 C 0.11 2.09 5.49 -3.07 -0.02 2.08 16 12 C -0.12 -2.43 6.12 -24.90 -0.15 -2.58 16 13 C 0.25 5.90 0.89 -89.50 -0.08 5.82 16 14 O -0.58 -14.63 13.19 -35.23 -0.46 -15.09 16 15 C -0.54 -13.52 8.25 -34.44 -0.28 -13.80 16 16 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.90 -22.97 10.72 55.43 0.59 -22.38 16 19 Si 0.91 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C 0.09 2.03 5.64 -2.42 -0.01 2.02 16 24 C 0.09 1.05 5.34 -3.31 -0.02 1.03 16 25 C 0.10 1.10 1.12 -90.24 -0.10 1.00 16 26 C -0.18 -1.94 8.10 37.16 0.30 -1.64 16 27 C -0.13 -1.10 8.85 37.16 0.33 -0.77 16 28 O -0.37 -4.54 9.87 -35.23 -0.35 -4.89 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.17 2.62 3.97 -56.35 -0.22 2.39 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.32 7.73 -51.93 -0.40 0.92 16 35 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.46 8.02 -51.93 -0.42 1.04 16 38 H 0.39 9.97 6.93 45.56 0.32 10.29 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.07 1.61 8.04 -51.93 -0.42 1.19 16 41 H 0.09 2.22 7.64 -51.93 -0.40 1.82 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.24 7.09 -51.93 -0.37 0.87 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.81 6.11 -51.92 -0.32 0.49 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -27.58 381.33 -7.54 -35.12 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -7.14 Total: 14.50 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.05 Total: 13.66 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.41 Total: -43.68 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.66 Total: -40.08 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.58 -7.54 -35.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.576 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds