Wall clock time and date at job start Tue Mar 31 2020 23:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.55004 * 2 1 4 4 C 1.53298 * 109.50833 * 120.12435 * 2 1 3 5 5 N 1.47148 * 108.41320 * 172.20916 * 4 2 1 6 6 C 1.34783 * 120.98472 * 129.46463 * 5 4 2 7 7 O 1.21345 * 120.00420 * 178.35273 * 6 5 4 8 8 C 1.49452 * 119.99720 * 358.35565 * 6 5 4 9 9 O 1.21350 * 120.00137 * 6.45923 * 8 6 5 10 10 N 1.34774 * 119.99764 * 186.46477 * 8 6 5 11 11 C 1.47015 * 125.65215 * 0.02562 * 10 8 6 12 12 C 1.54324 * 107.27486 * 181.02548 * 11 10 8 13 13 C 1.55155 * 102.93965 * 22.19047 * 12 11 10 14 14 O 1.42904 * 111.00455 * 82.57645 * 13 12 11 15 15 C 1.50703 * 111.00382 * 206.38485 * 13 12 11 16 16 H 1.08001 * 119.99923 * 0.02562 * 15 13 12 17 17 C 1.37876 * 120.00062 * 180.02562 * 15 13 12 18 18 N 1.31515 * 120.00049 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00139 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47062 * 89.99976 * 19 17 15 21 21 H 1.48494 * 109.47115 * 210.00301 * 19 17 15 22 22 H 1.48506 * 109.46744 * 329.99991 * 19 17 15 23 23 C 1.47430 * 125.64593 * 179.71531 * 10 8 6 24 24 C 1.47162 * 118.02792 * 309.52697 * 5 4 2 25 25 C 1.53297 * 108.41304 * 50.47091 * 24 5 4 26 26 C 1.53005 * 109.51355 * 187.79792 * 25 24 5 27 27 C 1.53001 * 109.55361 * 67.67224 * 25 24 5 28 28 O 1.42958 * 109.51297 * 239.86911 * 2 1 3 29 29 H 1.09000 * 109.47553 * 299.87897 * 1 2 3 30 30 H 1.09001 * 109.47272 * 59.87676 * 1 2 3 31 31 H 1.09004 * 109.47420 * 179.87739 * 1 2 3 32 32 H 1.09004 * 109.68032 * 291.94627 * 4 2 1 33 33 H 1.08997 * 109.68425 * 52.46241 * 4 2 1 34 34 H 1.09003 * 109.88331 * 300.44205 * 11 10 8 35 35 H 1.09001 * 109.88308 * 61.45135 * 11 10 8 36 36 H 1.08996 * 110.71896 * 140.55594 * 12 11 10 37 37 H 1.08999 * 110.71918 * 263.82959 * 12 11 10 38 38 H 0.96700 * 114.00150 * 179.97438 * 14 13 12 39 39 H 0.96995 * 119.99853 * 179.97438 * 18 17 15 40 40 H 1.08997 * 110.36456 * 274.74523 * 23 10 8 41 41 H 1.09001 * 110.36747 * 37.06945 * 23 10 8 42 42 H 1.09002 * 109.64792 * 290.74853 * 24 5 4 43 43 H 1.09004 * 109.72021 * 170.23339 * 24 5 4 44 44 H 1.08993 * 109.47052 * 179.74805 * 26 25 24 45 45 H 1.08998 * 109.46720 * 299.74697 * 26 25 24 46 46 H 1.08995 * 109.47375 * 59.74405 * 26 25 24 47 47 H 1.09007 * 109.46686 * 300.22623 * 27 25 24 48 48 H 1.08991 * 109.47476 * 60.22883 * 27 25 24 49 49 H 1.08999 * 109.46717 * 180.23116 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0419 -0.7252 1.2498 5 7 3.5010 -0.8769 1.1342 6 6 4.3191 -0.5047 2.1387 7 8 5.5175 -0.6654 2.0364 8 6 3.7501 0.1058 3.3784 9 8 2.5475 0.1596 3.5315 10 7 4.5727 0.5969 4.3264 11 6 6.0418 0.5972 4.2697 12 6 6.5508 1.2341 5.5800 13 6 5.3535 1.0418 6.5478 14 8 5.3616 -0.2683 7.1187 15 6 5.3540 2.0967 7.6240 16 1 6.1272 2.8505 7.6409 17 6 4.3673 2.0995 8.5871 18 7 3.4261 1.1813 8.5669 19 14 4.3675 3.4076 9.9207 20 1 3.5792 4.5802 9.4640 21 1 3.7599 2.8538 11.1573 22 1 5.7639 3.8285 10.2009 23 6 4.1482 1.2284 5.5891 24 6 4.0406 -1.4458 -0.1111 25 6 3.4312 -0.6856 -1.2946 26 6 3.8212 -1.3779 -2.6022 27 6 3.9530 0.7527 -1.3026 28 8 2.0075 -0.6764 -1.1654 29 1 -0.3634 0.5119 0.8910 30 1 -0.3634 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0022 32 1 1.8030 -0.1397 2.1377 33 1 1.5751 -1.7076 1.3213 34 1 6.4098 -0.4254 4.1872 35 1 6.3796 1.1827 3.4146 36 1 7.4320 0.7083 5.9474 37 1 6.7643 2.2933 5.4364 38 1 4.6319 -0.4351 7.7309 39 1 2.7322 1.1830 9.2446 40 1 3.9446 2.2878 5.4337 41 1 3.2664 0.7261 5.9869 42 1 3.7756 -2.5011 -0.1770 43 1 5.1252 -1.3383 -0.1249 44 1 3.3839 -0.8394 -3.4428 45 1 4.9068 -1.3845 -2.7000 46 1 3.4509 -2.4030 -2.5950 47 1 3.6763 1.2447 -0.3701 48 1 5.0384 0.7450 -1.4012 49 1 3.5157 1.2931 -2.1422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327023737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:13 Heat of formation + Delta-G solvation = -137.438286 kcal Electronic energy + Delta-G solvation = -31913.222870 eV Core-core repulsion = 27648.467746 eV Total energy + Delta-G solvation = -4264.755125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04214 -39.61900 -38.18016 -37.42293 -35.06563 -34.56641 -34.11099 -32.21542 -30.91327 -30.32911 -28.11680 -27.73169 -27.43662 -26.61016 -25.43615 -23.38157 -22.13908 -21.67597 -19.84597 -19.63377 -19.03149 -17.35970 -17.06914 -16.89142 -16.66979 -16.02399 -15.82131 -15.27027 -15.11817 -14.79624 -14.68215 -14.47620 -14.26528 -13.75524 -13.36822 -13.15594 -13.10218 -12.88209 -12.67324 -12.60641 -12.46455 -12.34364 -12.19577 -12.09686 -12.07325 -11.68938 -11.61287 -11.59838 -11.24922 -11.11037 -10.93424 -10.85569 -10.64301 -10.54589 -10.43028 -10.23921 -10.12500 -9.45585 -8.88476 -8.72094 -8.63684 -8.45995 -7.98297 -6.36128 -4.45655 1.68923 2.43708 3.16303 3.24481 3.27288 3.39815 3.46470 3.65726 4.20436 4.34988 4.49040 4.58653 4.68449 4.79849 4.91409 4.95927 5.14402 5.20812 5.32748 5.34515 5.41864 5.44299 5.49668 5.58467 5.61006 5.68441 5.73620 5.79639 5.80787 5.84342 5.95366 5.95765 5.99579 6.08770 6.23554 6.28091 6.44376 6.67009 6.74443 6.79710 7.06328 7.09462 7.12815 7.24722 7.67384 7.71155 7.92191 7.99062 8.34062 8.58295 9.24414 9.39968 10.71215 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002920 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.866155 B = 9585.411649 C =10295.999993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.065 0.935 4 C 0.025 3.975 5 N -0.588 5.588 6 C 0.512 3.488 7 O -0.517 6.517 8 C 0.511 3.489 9 O -0.529 6.529 10 N -0.567 5.567 11 C 0.110 3.890 12 C -0.122 4.122 13 C 0.250 3.750 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.088 3.912 24 C 0.086 3.914 25 C 0.101 3.899 26 C -0.135 4.135 27 C -0.176 4.176 28 O -0.372 6.372 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -2.459 -18.263 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.096 4.096 5 N -0.322 5.322 6 C 0.295 3.705 7 O -0.392 6.392 8 C 0.294 3.706 9 O -0.410 6.410 10 N -0.297 5.297 11 C -0.013 4.013 12 C -0.160 4.160 13 C 0.209 3.791 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.032 4.032 24 C -0.036 4.036 25 C 0.061 3.939 26 C -0.192 4.192 27 C -0.233 4.233 28 O -0.292 6.292 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.183 0.817 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.629 -2.751 -18.652 18.924 hybrid contribution -0.507 0.729 1.111 1.422 sum -2.135 -2.022 -17.541 17.786 Atomic orbital electron populations 1.21699 0.92169 1.03132 1.02817 1.22550 0.95516 0.95787 0.84769 0.91756 1.23978 0.78238 1.03947 1.03400 1.47925 1.07877 1.61237 1.15152 1.20307 0.86416 0.79245 0.84510 1.90716 1.14478 1.54015 1.80016 1.19577 0.86277 0.80546 0.84167 1.90269 1.13983 1.59400 1.77347 1.48676 1.08067 1.53977 1.19020 1.22189 0.78811 1.01740 0.98545 1.22724 0.99598 1.00359 0.93286 1.19634 0.87639 0.82781 0.89046 1.86095 1.55157 1.33227 1.64741 1.21500 1.11897 1.13165 1.10962 0.91291 1.25095 0.94468 0.95976 0.97719 1.69555 1.14241 1.34080 1.35605 0.86359 0.78481 0.81153 0.80678 1.20377 1.20944 1.19632 1.23617 1.02436 0.96634 0.80557 1.22396 1.00831 0.97570 0.82826 1.21825 0.81722 0.95288 0.95054 1.21712 1.01607 1.00988 0.94939 1.22374 1.01998 0.96251 1.02712 1.87964 1.20041 1.77284 1.43939 0.90395 0.91731 0.91677 0.81730 0.90986 0.90797 0.91897 0.90388 0.90385 0.76153 0.91788 0.91247 0.89385 0.90508 0.88063 0.91356 0.90779 0.91557 0.92061 0.91257 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 37.16 0.36 -1.00 16 2 C 0.07 0.84 3.01 -26.58 -0.08 0.76 16 3 H 0.06 0.78 6.25 -51.93 -0.32 0.45 16 4 C 0.03 0.35 5.68 -3.53 -0.02 0.33 16 5 N -0.59 -8.56 2.54 -172.77 -0.44 -9.00 16 6 C 0.51 8.90 7.73 -11.58 -0.09 8.81 16 7 O -0.52 -9.50 13.64 5.50 0.08 -9.43 16 8 C 0.51 10.02 7.84 -11.59 -0.09 9.93 16 9 O -0.53 -10.76 13.30 5.50 0.07 -10.68 16 10 N -0.57 -11.71 3.32 -170.89 -0.57 -12.27 16 11 C 0.11 2.08 5.50 -3.07 -0.02 2.07 16 12 C -0.12 -2.43 6.12 -24.90 -0.15 -2.58 16 13 C 0.25 5.92 0.89 -89.50 -0.08 5.84 16 14 O -0.58 -14.77 13.19 -35.23 -0.46 -15.24 16 15 C -0.54 -13.53 8.25 -34.44 -0.28 -13.82 16 16 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.90 -23.06 10.72 55.43 0.59 -22.47 16 19 Si 0.91 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 C 0.09 2.03 5.65 -2.41 -0.01 2.01 16 24 C 0.09 1.04 5.30 -3.53 -0.02 1.02 16 25 C 0.10 1.07 1.11 -90.46 -0.10 0.97 16 26 C -0.13 -1.07 8.85 37.16 0.33 -0.74 16 27 C -0.18 -1.82 8.09 37.16 0.30 -1.52 16 28 O -0.37 -4.44 9.87 -35.23 -0.35 -4.79 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.17 2.59 3.96 -56.38 -0.22 2.37 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.44 7.44 -51.93 -0.39 1.06 16 35 H 0.06 1.09 7.83 -51.93 -0.41 0.68 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 38 H 0.39 10.07 6.93 45.56 0.32 10.39 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.07 1.59 8.04 -51.93 -0.42 1.18 16 41 H 0.09 2.23 7.64 -51.93 -0.40 1.84 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.23 7.09 -51.93 -0.37 0.87 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.74 6.12 -51.93 -0.32 0.42 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -27.76 381.28 -7.54 -35.30 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.13 Total: 14.34 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -0.06 Total: 13.77 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.41 Total: -43.74 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.66 Total: -40.14 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.76 -7.54 -35.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327023737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.139 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds