Wall clock time and date at job start Tue Mar 31 2020 23:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70454 * 2 1 4 4 N 1.47147 * 109.68023 * 239.47077 * 2 1 3 5 5 C 1.34787 * 120.98573 * 110.78683 * 4 2 1 6 6 O 1.21351 * 119.99328 * 7.93682 * 5 4 2 7 7 C 1.49442 * 120.00243 * 187.93282 * 5 4 2 8 8 O 1.21356 * 120.00036 * 6.68133 * 7 5 4 9 9 N 1.34778 * 120.00091 * 186.67066 * 7 5 4 10 10 C 1.47024 * 125.64692 * 359.96365 * 9 7 5 11 11 C 1.54317 * 107.26994 * 181.09581 * 10 9 7 12 12 C 1.55155 * 102.94726 * 22.19197 * 11 10 9 13 13 O 1.42897 * 111.00465 * 82.57072 * 12 11 10 14 14 C 1.50702 * 111.00522 * 206.42840 * 12 11 10 15 15 H 1.07992 * 119.99845 * 353.64647 * 14 12 11 16 16 C 1.37874 * 119.99712 * 173.64874 * 14 12 11 17 17 N 1.31511 * 120.00212 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99788 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46769 * 90.00107 * 18 16 14 20 20 H 1.48503 * 109.47177 * 209.99891 * 18 16 14 21 21 H 1.48498 * 109.47335 * 329.99840 * 18 16 14 22 22 C 1.47423 * 125.64948 * 180.02562 * 9 7 5 23 23 C 1.47157 * 118.03762 * 291.05707 * 4 2 1 24 24 C 1.53712 * 108.16271 * 309.16172 * 23 4 2 25 25 O 1.42968 * 109.14645 * 52.53175 * 24 23 4 26 26 C 1.42954 * 114.16903 * 297.29358 * 25 24 23 27 27 C 1.53000 * 109.51306 * 302.65149 * 26 25 24 28 28 C 1.53005 * 109.51315 * 182.50118 * 26 25 24 29 29 H 1.09007 * 109.47264 * 180.52936 * 1 2 3 30 30 H 1.09006 * 109.47505 * 300.52884 * 1 2 3 31 31 H 1.08997 * 109.47637 * 60.53180 * 1 2 3 32 32 H 1.09007 * 109.88150 * 300.51213 * 10 9 7 33 33 H 1.08996 * 109.88046 * 61.51818 * 10 9 7 34 34 H 1.09004 * 110.71955 * 263.82639 * 11 10 9 35 35 H 1.09001 * 110.71899 * 140.55984 * 11 10 9 36 36 H 0.96699 * 114.00067 * 186.35447 * 13 12 11 37 37 H 0.97002 * 120.00435 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.36888 * 36.99631 * 22 9 7 39 39 H 1.09003 * 110.45894 * 274.72320 * 22 9 7 40 40 H 1.09002 * 109.67787 * 68.94060 * 23 4 2 41 41 H 1.09002 * 109.68494 * 189.49230 * 23 4 2 42 42 H 1.08999 * 109.65617 * 292.57289 * 24 23 4 43 43 H 1.09000 * 109.44546 * 172.37123 * 24 23 4 44 44 H 1.09003 * 109.47281 * 179.74257 * 27 26 25 45 45 H 1.08992 * 109.47246 * 299.75093 * 27 26 25 46 46 H 1.09008 * 109.46815 * 59.74980 * 27 26 25 47 47 H 1.08994 * 109.46971 * 300.24924 * 28 26 25 48 48 H 1.09002 * 109.46577 * 60.25333 * 28 26 25 49 49 H 1.09001 * 109.47135 * 180.25021 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0255 -0.7038 -1.1934 5 6 2.6454 -0.0350 -2.1861 6 8 2.9306 1.1358 -2.0428 7 6 2.9813 -0.7353 -3.4628 8 8 2.5904 -1.8680 -3.6546 9 7 3.7183 -0.1088 -4.4013 10 6 4.2533 1.2569 -4.3000 11 6 5.0034 1.5539 -5.6155 12 6 4.3689 0.5482 -6.6121 13 8 3.1394 1.0534 -7.1365 14 6 5.3293 0.2099 -7.7231 15 1 6.2709 0.7329 -7.8007 16 6 5.0055 -0.7671 -8.6405 17 7 3.8589 -1.4042 -8.5457 18 14 6.1956 -1.1859 -10.0181 19 1 7.1146 -2.2621 -9.5682 20 1 5.4344 -1.6494 -11.2060 21 1 6.9838 0.0209 -10.3754 22 6 4.1205 -0.6789 -5.7000 23 6 1.8191 -2.1586 -1.2741 24 6 2.3261 -2.7877 0.0335 25 8 1.7169 -2.1209 1.1418 26 6 2.0463 -0.7335 1.2431 27 6 3.5651 -0.5743 1.3364 28 6 1.3918 -0.1428 2.4936 29 1 -0.3634 -1.0277 0.0095 30 1 -0.3634 0.5220 0.8852 31 1 -0.3634 0.5055 -0.8947 32 1 3.4360 1.9666 -4.1709 33 1 4.9394 1.3245 -3.4558 34 1 6.0707 1.3634 -5.5023 35 1 4.8258 2.5800 -5.9375 36 1 2.6577 0.4215 -7.6877 37 1 3.6313 -2.0918 -9.1909 38 1 3.3208 -1.2980 -6.1065 39 1 5.0345 -1.2631 -5.5930 40 1 0.7577 -2.3722 -1.4002 41 1 2.3781 -2.5625 -2.1181 42 1 3.4091 -2.6818 0.0955 43 1 2.0611 -3.8448 0.0542 44 1 3.8158 0.4840 1.4090 45 1 3.9315 -1.0961 2.2204 46 1 4.0301 -0.9975 0.4459 47 1 0.3101 -0.2589 2.4268 48 1 1.7595 -0.6649 3.3771 49 1 1.6397 0.9160 2.5678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327025067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:23 Heat of formation + Delta-G solvation = -136.823027 kcal Electronic energy + Delta-G solvation = -32129.748511 eV Core-core repulsion = 27865.020066 eV Total energy + Delta-G solvation = -4264.728445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14270 -39.67183 -38.14654 -37.37120 -35.17758 -34.41905 -34.02763 -32.28843 -30.33338 -30.29648 -28.97296 -27.99927 -27.61284 -25.97771 -24.50766 -23.54250 -23.06154 -21.68217 -19.78475 -19.42114 -18.82636 -17.28942 -17.09248 -17.00653 -16.38760 -16.11800 -15.68740 -15.38775 -15.19484 -15.07916 -14.47709 -14.38054 -14.22801 -13.68037 -13.55153 -13.17320 -13.09568 -12.91584 -12.84159 -12.61894 -12.49954 -12.34575 -12.18378 -12.10128 -11.81934 -11.70284 -11.56102 -11.46607 -11.28770 -11.08765 -10.92224 -10.79894 -10.62292 -10.51784 -10.40698 -10.25520 -10.14996 -9.41159 -8.96867 -8.73060 -8.60690 -8.43453 -7.96342 -6.33355 -4.43022 1.71070 2.43536 3.17420 3.25571 3.28526 3.47070 3.48148 3.67929 4.22140 4.31120 4.52158 4.56419 4.69238 4.86031 4.94188 5.03558 5.05619 5.16811 5.31402 5.36172 5.37744 5.43713 5.49208 5.54502 5.59363 5.65104 5.73288 5.74544 5.77802 5.87427 5.95851 5.97935 6.01348 6.08412 6.24489 6.32979 6.46663 6.68442 6.77048 6.80121 7.00627 7.10533 7.14433 7.26271 7.68454 7.74024 7.96218 8.00154 8.37041 8.61289 9.24362 9.32896 10.73790 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002869 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.715774 B = 9756.884690 C =10113.528632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 H 0.107 0.893 4 N -0.586 5.586 5 C 0.513 3.487 6 O -0.517 6.517 7 C 0.509 3.491 8 O -0.530 6.530 9 N -0.570 5.570 10 C 0.110 3.890 11 C -0.121 4.121 12 C 0.249 3.751 13 O -0.581 6.581 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.091 3.909 23 C 0.041 3.959 24 C 0.044 3.956 25 O -0.372 6.372 26 C 0.106 3.894 27 C -0.176 4.176 28 C -0.138 4.138 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.381 0.619 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 0.018 18.746 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.125 0.875 4 N -0.321 5.321 5 C 0.297 3.703 6 O -0.392 6.392 7 C 0.292 3.708 8 O -0.411 6.411 9 N -0.301 5.301 10 C -0.013 4.013 11 C -0.159 4.159 12 C 0.208 3.792 13 O -0.389 6.389 14 C -0.575 4.575 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.030 4.030 23 C -0.081 4.081 24 C -0.033 4.033 25 O -0.291 6.291 26 C 0.066 3.934 27 C -0.233 4.233 28 C -0.196 4.196 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.730 0.353 19.120 19.483 hybrid contribution 0.516 -0.800 -1.253 1.574 sum -3.214 -0.448 17.867 18.159 Atomic orbital electron populations 1.22109 0.94057 1.03088 1.02431 1.21917 0.95103 0.97959 0.84047 0.87535 1.48000 1.56678 1.09046 1.18329 1.20374 0.78417 0.86848 0.84701 1.90711 1.51748 1.16189 1.80517 1.19572 0.80469 0.86207 0.84556 1.90470 1.54263 1.18105 1.78283 1.48712 1.47291 1.16342 1.17769 1.22172 0.97999 0.82666 0.98434 1.22708 0.99096 1.00956 0.93136 1.19636 0.83352 0.86695 0.89514 1.86137 1.36864 1.45577 1.70335 1.21455 1.04128 1.20604 1.11323 0.91370 1.25087 0.95490 0.94962 0.97701 1.69705 1.21834 1.24761 1.36891 0.86384 0.80646 0.78743 0.81035 1.20410 1.20978 1.19657 1.23517 1.00548 0.99623 0.79263 1.23528 1.04110 0.79060 1.01371 1.23169 0.97657 0.97088 0.85411 1.87963 1.71570 1.21331 1.48196 1.21815 0.94528 0.82448 0.94629 1.22369 0.95354 1.02997 1.02615 1.21823 1.01589 1.00580 0.95585 0.91518 0.90911 0.92220 0.90890 0.91941 0.90329 0.90468 0.76936 0.91943 0.89010 0.91313 0.90685 0.83493 0.92412 0.87636 0.91239 0.91613 0.91994 0.91118 0.91477 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.63 37.16 0.32 -1.34 16 2 C 0.11 1.34 2.25 -67.43 -0.15 1.19 16 3 H 0.11 1.34 7.06 -51.93 -0.37 0.98 16 4 N -0.59 -8.32 2.23 -165.00 -0.37 -8.68 16 5 C 0.51 8.85 7.70 -11.58 -0.09 8.76 16 6 O -0.52 -9.45 13.65 5.50 0.07 -9.37 16 7 C 0.51 10.01 7.77 -11.59 -0.09 9.92 16 8 O -0.53 -10.92 13.46 5.49 0.07 -10.85 16 9 N -0.57 -11.83 3.33 -171.04 -0.57 -12.40 16 10 C 0.11 2.10 5.51 -3.07 -0.02 2.08 16 11 C -0.12 -2.43 6.13 -24.90 -0.15 -2.58 16 12 C 0.25 5.90 0.87 -89.63 -0.08 5.83 16 13 O -0.58 -14.61 13.16 -35.23 -0.46 -15.07 16 14 C -0.54 -13.62 8.27 -34.44 -0.28 -13.91 16 15 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 16 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 17 N -0.89 -23.13 10.69 55.43 0.59 -22.53 16 18 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.09 2.11 5.38 -2.54 -0.01 2.10 16 23 C 0.04 0.53 5.77 -3.31 -0.02 0.51 16 24 C 0.04 0.47 6.61 37.53 0.25 0.72 16 25 O -0.37 -4.21 9.85 -35.23 -0.35 -4.56 16 26 C 0.11 1.09 0.81 -90.47 -0.07 1.02 16 27 C -0.18 -1.79 8.10 37.16 0.30 -1.49 16 28 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 29 H 0.07 0.72 7.21 -51.92 -0.37 0.34 16 30 H 0.07 0.60 6.42 -51.93 -0.33 0.26 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.43 7.44 -51.92 -0.39 1.04 16 33 H 0.06 1.09 7.83 -51.93 -0.41 0.68 16 34 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.38 9.75 7.57 45.56 0.34 10.09 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 39 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 40 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 41 H 0.15 2.22 4.48 -54.03 -0.24 1.98 16 42 H 0.06 0.63 6.25 -51.93 -0.32 0.30 16 43 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.73 6.11 -51.92 -0.32 0.41 16 47 H 0.07 0.53 6.38 -51.93 -0.33 0.19 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -28.04 375.49 -7.11 -35.15 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.85 Total: 14.03 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 0.11 Total: 13.74 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.34 Total: -43.61 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.66 Total: -39.85 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.04 -7.11 -35.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.672 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds