Wall clock time and date at job start Tue Mar 31 2020 23:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70454 * 2 1 4 4 N 1.47147 * 109.68023 * 239.47077 * 2 1 3 5 5 C 1.34787 * 120.98573 * 110.78683 * 4 2 1 6 6 O 1.21351 * 119.99328 * 7.93682 * 5 4 2 7 7 C 1.49442 * 120.00243 * 187.93282 * 5 4 2 8 8 O 1.21356 * 120.00036 * 6.68133 * 7 5 4 9 9 N 1.34778 * 120.00091 * 186.67066 * 7 5 4 10 10 C 1.47024 * 125.64692 * 359.96365 * 9 7 5 11 11 C 1.54317 * 107.26994 * 181.09581 * 10 9 7 12 12 C 1.55155 * 102.94726 * 22.19197 * 11 10 9 13 13 O 1.42897 * 111.00465 * 82.57072 * 12 11 10 14 14 C 1.50702 * 111.00522 * 206.42840 * 12 11 10 15 15 H 1.07992 * 119.99845 * 353.64647 * 14 12 11 16 16 C 1.37874 * 119.99712 * 173.64874 * 14 12 11 17 17 N 1.31511 * 120.00212 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99788 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46769 * 90.00107 * 18 16 14 20 20 H 1.48503 * 109.47177 * 209.99891 * 18 16 14 21 21 H 1.48498 * 109.47335 * 329.99840 * 18 16 14 22 22 C 1.47423 * 125.64948 * 180.02562 * 9 7 5 23 23 C 1.47157 * 118.03762 * 291.05707 * 4 2 1 24 24 C 1.53712 * 108.16271 * 309.16172 * 23 4 2 25 25 O 1.42968 * 109.14645 * 52.53175 * 24 23 4 26 26 C 1.42954 * 114.16903 * 297.29358 * 25 24 23 27 27 C 1.53000 * 109.51306 * 302.65149 * 26 25 24 28 28 C 1.53005 * 109.51315 * 182.50118 * 26 25 24 29 29 H 1.09007 * 109.47264 * 180.52936 * 1 2 3 30 30 H 1.09006 * 109.47505 * 300.52884 * 1 2 3 31 31 H 1.08997 * 109.47637 * 60.53180 * 1 2 3 32 32 H 1.09007 * 109.88150 * 300.51213 * 10 9 7 33 33 H 1.08996 * 109.88046 * 61.51818 * 10 9 7 34 34 H 1.09004 * 110.71955 * 263.82639 * 11 10 9 35 35 H 1.09001 * 110.71899 * 140.55984 * 11 10 9 36 36 H 0.96699 * 114.00067 * 186.35447 * 13 12 11 37 37 H 0.97002 * 120.00435 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.36888 * 36.99631 * 22 9 7 39 39 H 1.09003 * 110.45894 * 274.72320 * 22 9 7 40 40 H 1.09002 * 109.67787 * 68.94060 * 23 4 2 41 41 H 1.09002 * 109.68494 * 189.49230 * 23 4 2 42 42 H 1.08999 * 109.65617 * 292.57289 * 24 23 4 43 43 H 1.09000 * 109.44546 * 172.37123 * 24 23 4 44 44 H 1.09003 * 109.47281 * 179.74257 * 27 26 25 45 45 H 1.08992 * 109.47246 * 299.75093 * 27 26 25 46 46 H 1.09008 * 109.46815 * 59.74980 * 27 26 25 47 47 H 1.08994 * 109.46971 * 300.24924 * 28 26 25 48 48 H 1.09002 * 109.46577 * 60.25333 * 28 26 25 49 49 H 1.09001 * 109.47135 * 180.25021 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0255 -0.7038 -1.1934 5 6 2.6454 -0.0350 -2.1861 6 8 2.9306 1.1358 -2.0428 7 6 2.9813 -0.7353 -3.4628 8 8 2.5904 -1.8680 -3.6546 9 7 3.7183 -0.1088 -4.4013 10 6 4.2533 1.2569 -4.3000 11 6 5.0034 1.5539 -5.6155 12 6 4.3689 0.5482 -6.6121 13 8 3.1394 1.0534 -7.1365 14 6 5.3293 0.2099 -7.7231 15 1 6.2709 0.7329 -7.8007 16 6 5.0055 -0.7671 -8.6405 17 7 3.8589 -1.4042 -8.5457 18 14 6.1956 -1.1859 -10.0181 19 1 7.1146 -2.2621 -9.5682 20 1 5.4344 -1.6494 -11.2060 21 1 6.9838 0.0209 -10.3754 22 6 4.1205 -0.6789 -5.7000 23 6 1.8191 -2.1586 -1.2741 24 6 2.3261 -2.7877 0.0335 25 8 1.7169 -2.1209 1.1418 26 6 2.0463 -0.7335 1.2431 27 6 3.5651 -0.5743 1.3364 28 6 1.3918 -0.1428 2.4936 29 1 -0.3634 -1.0277 0.0095 30 1 -0.3634 0.5220 0.8852 31 1 -0.3634 0.5055 -0.8947 32 1 3.4360 1.9666 -4.1709 33 1 4.9394 1.3245 -3.4558 34 1 6.0707 1.3634 -5.5023 35 1 4.8258 2.5800 -5.9375 36 1 2.6577 0.4215 -7.6877 37 1 3.6313 -2.0918 -9.1909 38 1 3.3208 -1.2980 -6.1065 39 1 5.0345 -1.2631 -5.5930 40 1 0.7577 -2.3722 -1.4002 41 1 2.3781 -2.5625 -2.1181 42 1 3.4091 -2.6818 0.0955 43 1 2.0611 -3.8448 0.0542 44 1 3.8158 0.4840 1.4090 45 1 3.9315 -1.0961 2.2204 46 1 4.0301 -0.9975 0.4459 47 1 0.3101 -0.2589 2.4268 48 1 1.7595 -0.6649 3.3771 49 1 1.6397 0.9160 2.5678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327025067.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:22 Heat of formation + Delta-G solvation = -156.364480 kcal Electronic energy + Delta-G solvation = -32130.595892 eV Core-core repulsion = 27865.020066 eV Total energy + Delta-G solvation = -4265.575826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36397 -40.99402 -39.56885 -38.99685 -36.53427 -35.76221 -35.13265 -34.25583 -31.99980 -31.20090 -30.03003 -29.73445 -28.41191 -27.64055 -25.90928 -24.57577 -24.35249 -23.02916 -21.55839 -20.71207 -19.92120 -19.15774 -18.40717 -18.35700 -17.60277 -17.38268 -17.14559 -16.92771 -16.54940 -16.25421 -16.02226 -15.67828 -15.43600 -15.01926 -14.77550 -14.71192 -14.56991 -14.36044 -14.01158 -13.82583 -13.56355 -13.53742 -13.35005 -13.14870 -13.00168 -12.96505 -12.84897 -12.70123 -12.61486 -12.43525 -12.35036 -12.29866 -12.13734 -12.13218 -12.00670 -11.42461 -11.21488 -11.12002 -10.70469 -10.47116 -10.21668 -9.77307 -9.60131 -8.26101 -6.42964 0.24900 1.10687 1.43014 1.45801 1.55125 2.00323 2.22226 2.39211 2.70222 2.99458 3.03801 3.48132 3.71946 3.74155 3.89336 3.91719 4.02063 4.11228 4.13299 4.15031 4.26387 4.28490 4.43067 4.56015 4.63502 4.66488 4.69574 4.72606 4.75512 4.81119 4.84959 4.90013 4.94930 4.98917 5.03452 5.09990 5.15521 5.17054 5.25769 5.31482 5.38914 5.41708 5.73202 5.87367 6.03466 6.15176 6.24936 6.51897 6.65708 6.83557 7.25235 7.33749 8.79479 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002869 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.715774 B = 9756.884690 C =10113.528632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 H 0.101 0.899 4 N -0.576 5.576 5 C 0.516 3.484 6 O -0.530 6.530 7 C 0.502 3.498 8 O -0.545 6.545 9 N -0.580 5.580 10 C 0.118 3.882 11 C -0.114 4.114 12 C 0.233 3.767 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.029 3.971 17 N -0.914 5.914 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.108 3.892 23 C 0.040 3.960 24 C 0.050 3.950 25 O -0.375 6.375 26 C 0.105 3.895 27 C -0.174 4.174 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.270 0.730 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.057 0.943 43 H 0.128 0.872 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 0.313 20.794 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 H 0.119 0.881 4 N -0.309 5.309 5 C 0.298 3.702 6 O -0.407 6.407 7 C 0.286 3.714 8 O -0.426 6.426 9 N -0.311 5.311 10 C -0.004 4.004 11 C -0.152 4.152 12 C 0.193 3.807 13 O -0.396 6.396 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.172 4.172 17 N -0.553 5.553 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.014 4.014 23 C -0.081 4.081 24 C -0.027 4.027 25 O -0.294 6.294 26 C 0.065 3.935 27 C -0.231 4.231 28 C -0.193 4.193 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.144 0.856 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.516 0.645 21.214 21.513 hybrid contribution 0.389 -0.936 -1.839 2.099 sum -3.127 -0.291 19.376 19.628 Atomic orbital electron populations 1.22098 0.92759 1.03177 1.03124 1.22222 0.96084 0.97702 0.83495 0.88068 1.48109 1.55129 1.09621 1.18086 1.19860 0.79320 0.86601 0.84407 1.90697 1.52923 1.16415 1.80668 1.20169 0.79737 0.86142 0.85312 1.90485 1.54431 1.18816 1.78913 1.48739 1.48151 1.16951 1.17258 1.22160 0.98035 0.81583 0.98574 1.22716 0.99790 1.00364 0.92350 1.19868 0.82760 0.88144 0.89974 1.86130 1.37526 1.45608 1.70307 1.21738 1.04526 1.20887 1.12161 0.91222 1.25798 0.96864 0.94867 0.99711 1.69815 1.23051 1.24965 1.37425 0.85448 0.78727 0.78496 0.78314 1.20014 1.21007 1.19231 1.23060 0.98795 0.98980 0.80601 1.23507 1.04104 0.78397 1.02139 1.23170 0.97559 0.98005 0.83971 1.87976 1.71653 1.21817 1.47907 1.21969 0.94798 0.81899 0.94810 1.22362 0.95193 1.03361 1.02223 1.21857 1.01748 1.01384 0.94285 0.91713 0.88134 0.93596 0.91321 0.89898 0.88808 0.89718 0.77711 0.92027 0.92193 0.92340 0.90189 0.85618 0.92446 0.85393 0.90749 0.90325 0.93977 0.90489 0.90636 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.63 71.98 0.62 -2.29 16 2 C 0.11 2.36 2.25 44.97 0.10 2.46 16 3 H 0.10 2.39 7.06 -2.39 -0.02 2.37 16 4 N -0.58 -15.99 2.23 -794.28 -1.77 -17.76 16 5 C 0.52 17.73 7.70 87.26 0.67 18.40 16 6 O -0.53 -19.10 13.65 -3.25 -0.04 -19.15 16 7 C 0.50 20.14 7.77 87.27 0.68 20.82 16 8 O -0.55 -23.16 13.46 -3.27 -0.04 -23.20 16 9 N -0.58 -24.43 3.33 -813.41 -2.71 -27.14 16 10 C 0.12 4.46 5.51 86.73 0.48 4.94 16 11 C -0.11 -4.53 6.13 31.78 0.19 -4.33 16 12 C 0.23 11.21 0.87 -10.15 -0.01 11.20 16 13 O -0.59 -30.25 13.16 -148.98 -1.96 -32.21 16 14 C -0.56 -28.34 8.27 25.60 0.21 -28.13 16 15 H 0.07 3.45 7.79 -2.91 -0.02 3.43 16 16 C 0.03 1.47 5.29 84.65 0.45 1.92 16 17 N -0.91 -48.35 10.69 21.45 0.23 -48.12 16 18 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 C 0.11 5.13 5.38 86.85 0.47 5.60 16 23 C 0.04 1.02 5.77 86.49 0.50 1.52 16 24 C 0.05 1.00 6.61 72.22 0.48 1.48 16 25 O -0.37 -7.58 9.85 -148.98 -1.47 -9.04 16 26 C 0.11 1.92 0.81 -10.69 -0.01 1.91 16 27 C -0.17 -3.20 8.10 71.98 0.58 -2.62 16 28 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 29 H 0.06 1.26 7.21 -2.38 -0.02 1.24 16 30 H 0.10 1.34 6.42 -2.38 -0.02 1.33 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 2.65 7.44 -2.38 -0.02 2.63 16 33 H 0.08 2.78 7.83 -2.39 -0.02 2.77 16 34 H 0.09 3.39 8.03 -2.38 -0.02 3.37 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.37 19.89 7.57 -74.06 -0.56 19.33 16 37 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 38 H 0.06 3.22 7.33 -2.39 -0.02 3.20 16 39 H 0.06 2.85 8.03 -2.39 -0.02 2.83 16 40 H 0.08 1.96 7.65 -2.39 -0.02 1.94 16 41 H 0.13 3.86 4.48 -35.60 -0.16 3.70 16 42 H 0.06 1.17 6.25 -2.39 -0.01 1.16 16 43 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 0.94 6.11 -2.38 -0.01 0.92 16 47 H 0.08 0.87 6.38 -2.39 -0.02 0.85 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -60.52 375.49 0.54 -59.98 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: 0.27 Total: 41.94 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 6.01 Total: 31.81 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.25 Total: -93.02 kcal Atomic # 8 Polarization: -80.09 SS G_CDS: -3.52 Total: -83.60 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -60.52 0.54 -59.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025067.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.385 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds