Wall clock time and date at job start Tue Mar 31 2020 23:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.68042 * 2 1 4 4 N 1.47160 * 109.65276 * 239.46100 * 2 1 3 5 5 C 1.34784 * 120.99290 * 110.81815 * 4 2 1 6 6 O 1.21349 * 119.99552 * 358.28501 * 5 4 2 7 7 C 1.49449 * 119.99854 * 178.27983 * 5 4 2 8 8 O 1.21350 * 120.00281 * 6.46804 * 7 5 4 9 9 N 1.34774 * 119.99537 * 186.46867 * 7 5 4 10 10 C 1.47015 * 125.65275 * 359.69209 * 9 7 5 11 11 C 1.54330 * 107.26951 * 178.85085 * 10 9 7 12 12 C 1.55159 * 103.02099 * 338.13973 * 11 10 9 13 13 O 1.42893 * 111.00625 * 277.23181 * 12 11 10 14 14 C 1.50696 * 111.00497 * 153.37748 * 12 11 10 15 15 H 1.08008 * 120.00234 * 6.35586 * 14 12 11 16 16 C 1.37875 * 120.00046 * 186.35112 * 14 12 11 17 17 N 1.31507 * 120.00031 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99989 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47156 * 60.00214 * 18 16 14 20 20 H 1.48502 * 109.47197 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47258 * 299.99883 * 18 16 14 22 22 C 1.47427 * 125.64666 * 180.02562 * 9 7 5 23 23 C 1.47156 * 118.02508 * 290.75101 * 4 2 1 24 24 C 1.53290 * 108.41288 * 309.52360 * 23 4 2 25 25 O 1.42958 * 109.22475 * 52.28772 * 24 23 4 26 26 C 1.42968 * 114.16368 * 297.41724 * 25 24 23 27 27 C 1.53005 * 109.50907 * 182.50418 * 26 25 24 28 28 C 1.53001 * 109.51408 * 302.60277 * 26 25 24 29 29 H 1.09000 * 109.46790 * 299.48070 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.48080 * 1 2 3 31 31 H 1.08999 * 109.47172 * 179.48550 * 1 2 3 32 32 H 1.09002 * 109.88397 * 298.40036 * 10 9 7 33 33 H 1.09007 * 109.88295 * 59.56038 * 10 9 7 34 34 H 1.09009 * 110.85297 * 219.67299 * 11 10 9 35 35 H 1.09003 * 110.51775 * 96.45196 * 11 10 9 36 36 H 0.96700 * 114.00191 * 173.64622 * 13 12 11 37 37 H 0.96999 * 120.00201 * 179.97438 * 17 16 14 38 38 H 1.08995 * 110.36585 * 322.93117 * 22 9 7 39 39 H 1.09000 * 110.36724 * 85.25264 * 22 9 7 40 40 H 1.09004 * 109.67848 * 189.78557 * 23 4 2 41 41 H 1.08997 * 109.68472 * 69.27029 * 23 4 2 42 42 H 1.09000 * 109.51243 * 172.21403 * 24 23 4 43 43 H 1.09004 * 109.51786 * 292.30981 * 24 23 4 44 44 H 1.08993 * 109.47052 * 59.99993 * 27 26 25 45 45 H 1.08998 * 109.46720 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47164 * 299.99593 * 27 26 25 47 47 H 1.08997 * 109.46648 * 60.00189 * 28 26 25 48 48 H 1.08994 * 109.46905 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47136 * 300.00489 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 7 2.0249 -0.7042 -1.1936 5 6 2.6451 -0.0360 -2.1864 6 8 2.7747 1.1686 -2.1182 7 6 3.1731 -0.7787 -3.3709 8 8 2.9419 -1.9633 -3.4968 9 7 3.9060 -0.1327 -4.2994 10 6 4.2543 1.2954 -4.2747 11 6 5.1231 1.5766 -5.5188 12 6 5.6808 0.1745 -5.8800 13 8 6.8289 -0.1394 -5.0893 14 6 5.9983 0.0818 -7.3502 15 1 5.9256 0.9599 -7.9748 16 6 6.3817 -1.1240 -7.8979 17 7 6.4698 -2.1933 -7.1375 18 14 6.7760 -1.2388 -9.7203 19 1 7.9013 -0.3248 -10.0418 20 1 7.1600 -2.6333 -10.0568 21 1 5.5807 -0.8496 -10.5108 22 6 4.4854 -0.7396 -5.5115 23 6 1.8240 -2.1600 -1.2705 24 6 2.3260 -2.7876 0.0348 25 8 1.7168 -2.1204 1.1427 26 6 2.0464 -0.7329 1.2434 27 6 1.3919 -0.1418 2.4937 28 6 3.5651 -0.5738 1.3379 29 1 -0.3633 0.5058 0.8946 30 1 -0.3634 0.5219 -0.8853 31 1 -0.3633 -1.0276 -0.0092 32 1 3.3472 1.8989 -4.3094 33 1 4.8194 1.5236 -3.3709 34 1 5.9342 2.2640 -5.2783 35 1 4.5115 1.9694 -6.3311 36 1 7.1543 -1.0420 -5.2094 37 1 6.7392 -3.0417 -7.5229 38 1 4.8323 -1.7511 -5.3005 39 1 3.7524 -0.7497 -6.3182 40 1 2.3864 -2.5641 -2.1123 41 1 0.7638 -2.3780 -1.3988 42 1 2.0611 -3.8447 0.0559 43 1 3.4092 -2.6826 0.0964 44 1 1.7560 -0.6664 3.3770 45 1 1.6439 0.9159 2.5701 46 1 0.3098 -0.2538 2.4249 47 1 4.0305 -0.9936 0.4461 48 1 3.8155 0.4842 1.4142 49 1 3.9313 -1.0989 2.2202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327025070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:26 Heat of formation + Delta-G solvation = -133.187856 kcal Electronic energy + Delta-G solvation = -32202.486318 eV Core-core repulsion = 27937.915506 eV Total energy + Delta-G solvation = -4264.570812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14506 -39.67478 -38.15052 -37.42322 -35.16269 -34.41749 -34.01629 -32.29856 -30.33657 -30.30675 -28.95940 -28.00580 -27.58611 -25.98532 -24.50381 -23.51569 -23.05924 -21.70895 -19.78826 -19.41642 -18.84302 -17.30795 -17.05056 -16.99054 -16.37416 -16.15707 -15.72590 -15.33467 -15.18141 -15.05994 -14.59637 -14.35278 -14.23695 -13.65405 -13.48731 -13.23333 -13.03304 -12.97447 -12.83677 -12.62035 -12.47701 -12.36075 -12.17538 -12.10100 -11.81394 -11.71293 -11.55415 -11.46519 -11.24572 -11.07324 -10.95695 -10.73575 -10.63644 -10.53818 -10.37525 -10.25425 -10.14378 -9.41486 -8.82860 -8.73123 -8.62870 -8.46272 -7.98642 -6.34158 -4.43718 1.70605 2.43246 3.18941 3.24860 3.26798 3.46981 3.51398 3.68422 4.21773 4.32931 4.49644 4.59385 4.71642 4.92456 4.93612 5.04454 5.10581 5.17563 5.34827 5.39104 5.40607 5.42994 5.51446 5.58267 5.62365 5.66214 5.73493 5.77236 5.77662 5.90395 5.97386 5.99714 6.04046 6.09303 6.23347 6.33533 6.45751 6.67490 6.76220 6.81458 7.04704 7.10066 7.15275 7.24974 7.67645 7.73439 7.95378 8.00673 8.35488 8.60244 9.23022 9.31689 10.73053 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.002927 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.956451 B = 9563.253067 C = 9908.632020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 H 0.106 0.894 4 N -0.582 5.582 5 C 0.513 3.487 6 O -0.518 6.518 7 C 0.511 3.489 8 O -0.528 6.528 9 N -0.569 5.569 10 C 0.110 3.890 11 C -0.121 4.121 12 C 0.249 3.751 13 O -0.581 6.581 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.091 3.909 23 C 0.020 3.980 24 C 0.045 3.955 25 O -0.373 6.373 26 C 0.106 3.894 27 C -0.138 4.138 28 C -0.177 4.177 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.381 0.619 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.166 0.834 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 1.863 15.313 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 H 0.124 0.876 4 N -0.317 5.317 5 C 0.296 3.704 6 O -0.394 6.394 7 C 0.294 3.706 8 O -0.410 6.410 9 N -0.299 5.299 10 C -0.013 4.013 11 C -0.159 4.159 12 C 0.209 3.791 13 O -0.389 6.389 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.030 4.030 23 C -0.101 4.101 24 C -0.032 4.032 25 O -0.292 6.292 26 C 0.066 3.934 27 C -0.196 4.196 28 C -0.235 4.235 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.693 2.222 15.626 18.522 hybrid contribution 0.322 -0.697 -1.317 1.525 sum -9.371 1.525 14.308 17.172 Atomic orbital electron populations 1.22090 0.94116 1.02982 1.02351 1.21917 0.95147 0.97902 0.84128 0.87625 1.48016 1.56197 1.09131 1.18344 1.20302 0.78796 0.87403 0.83903 1.90711 1.56514 1.13830 1.78323 1.19589 0.80573 0.86758 0.83656 1.90271 1.59803 1.15137 1.75763 1.48714 1.47036 1.11760 1.22386 1.22182 0.98964 0.80332 0.99784 1.22720 0.98314 0.99129 0.95761 1.19631 0.81930 0.87962 0.89621 1.86134 1.47536 1.36828 1.68428 1.21420 1.47497 0.95816 0.92854 0.91409 1.25080 0.93761 0.95394 0.98953 1.69689 1.46828 1.00459 1.36251 0.86439 0.79024 0.77246 0.84081 1.19960 1.21071 1.19991 1.23547 0.96505 1.00420 0.82508 1.23886 1.04227 0.79125 1.02900 1.23051 0.97798 0.97013 0.85312 1.87958 1.71576 1.21265 1.48378 1.21815 0.94543 0.82517 0.94562 1.21825 1.01525 1.00574 0.95643 1.22382 0.95332 1.02972 1.02800 0.90948 0.92300 0.91594 0.91403 0.91332 0.90454 0.90296 0.76941 0.91880 0.88949 0.91266 0.81768 0.91055 0.87693 0.92343 0.91455 0.90855 0.91156 0.91898 0.91286 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.68 37.16 0.32 -1.30 16 2 C 0.11 1.35 2.23 -67.42 -0.15 1.20 16 3 H 0.11 1.35 7.09 -51.93 -0.37 0.98 16 4 N -0.58 -8.36 2.24 -165.24 -0.37 -8.73 16 5 C 0.51 8.85 7.73 -11.58 -0.09 8.76 16 6 O -0.52 -9.47 13.65 5.50 0.08 -9.39 16 7 C 0.51 9.98 7.84 -11.59 -0.09 9.89 16 8 O -0.53 -10.73 13.30 5.50 0.07 -10.66 16 9 N -0.57 -11.72 3.33 -171.01 -0.57 -12.28 16 10 C 0.11 2.09 5.49 -3.06 -0.02 2.07 16 11 C -0.12 -2.42 6.13 -24.89 -0.15 -2.57 16 12 C 0.25 5.87 0.87 -89.61 -0.08 5.79 16 13 O -0.58 -14.39 13.16 -35.23 -0.46 -14.86 16 14 C -0.54 -13.59 8.27 -34.44 -0.28 -13.87 16 15 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 16 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 17 N -0.89 -22.96 10.69 55.43 0.59 -22.36 16 18 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.09 2.09 5.38 -2.52 -0.01 2.07 16 23 C 0.02 0.26 5.99 -3.53 -0.02 0.24 16 24 C 0.05 0.52 6.60 37.31 0.25 0.77 16 25 O -0.37 -4.40 9.87 -35.23 -0.35 -4.74 16 26 C 0.11 1.13 0.81 -90.46 -0.07 1.06 16 27 C -0.14 -1.12 8.30 37.16 0.31 -0.81 16 28 C -0.18 -1.94 8.09 37.16 0.30 -1.64 16 29 H 0.07 0.59 6.35 -51.93 -0.33 0.26 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.70 7.20 -51.93 -0.37 0.33 16 32 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 33 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 34 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 35 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 36 H 0.38 9.60 7.57 45.56 0.34 9.94 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.09 2.34 7.33 -51.93 -0.38 1.95 16 39 H 0.07 1.63 8.03 -51.93 -0.42 1.22 16 40 H 0.17 2.56 3.96 -56.38 -0.22 2.34 16 41 H 0.07 0.89 7.64 -51.93 -0.40 0.49 16 42 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.70 6.26 -51.93 -0.33 0.37 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.53 6.34 -51.93 -0.33 0.21 16 47 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -27.58 375.09 -7.09 -34.67 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.83 Total: 14.51 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 0.11 Total: 13.36 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -0.35 Total: -43.37 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.66 Total: -39.65 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.58 -7.09 -34.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.517 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds