Wall clock time and date at job start Tue Mar 31 2020 23:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.68042 * 2 1 4 4 N 1.47160 * 109.65276 * 239.46100 * 2 1 3 5 5 C 1.34784 * 120.99290 * 110.81815 * 4 2 1 6 6 O 1.21349 * 119.99552 * 358.28501 * 5 4 2 7 7 C 1.49449 * 119.99854 * 178.27983 * 5 4 2 8 8 O 1.21350 * 120.00281 * 6.46804 * 7 5 4 9 9 N 1.34774 * 119.99537 * 186.46867 * 7 5 4 10 10 C 1.47015 * 125.65275 * 359.69209 * 9 7 5 11 11 C 1.54330 * 107.26951 * 178.85085 * 10 9 7 12 12 C 1.55159 * 103.02099 * 338.13973 * 11 10 9 13 13 O 1.42893 * 111.00625 * 277.23181 * 12 11 10 14 14 C 1.50696 * 111.00497 * 153.37748 * 12 11 10 15 15 H 1.08008 * 120.00234 * 6.35586 * 14 12 11 16 16 C 1.37875 * 120.00046 * 186.35112 * 14 12 11 17 17 N 1.31507 * 120.00031 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99989 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47156 * 60.00214 * 18 16 14 20 20 H 1.48502 * 109.47197 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47258 * 299.99883 * 18 16 14 22 22 C 1.47427 * 125.64666 * 180.02562 * 9 7 5 23 23 C 1.47156 * 118.02508 * 290.75101 * 4 2 1 24 24 C 1.53290 * 108.41288 * 309.52360 * 23 4 2 25 25 O 1.42958 * 109.22475 * 52.28772 * 24 23 4 26 26 C 1.42968 * 114.16368 * 297.41724 * 25 24 23 27 27 C 1.53005 * 109.50907 * 182.50418 * 26 25 24 28 28 C 1.53001 * 109.51408 * 302.60277 * 26 25 24 29 29 H 1.09000 * 109.46790 * 299.48070 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.48080 * 1 2 3 31 31 H 1.08999 * 109.47172 * 179.48550 * 1 2 3 32 32 H 1.09002 * 109.88397 * 298.40036 * 10 9 7 33 33 H 1.09007 * 109.88295 * 59.56038 * 10 9 7 34 34 H 1.09009 * 110.85297 * 219.67299 * 11 10 9 35 35 H 1.09003 * 110.51775 * 96.45196 * 11 10 9 36 36 H 0.96700 * 114.00191 * 173.64622 * 13 12 11 37 37 H 0.96999 * 120.00201 * 179.97438 * 17 16 14 38 38 H 1.08995 * 110.36585 * 322.93117 * 22 9 7 39 39 H 1.09000 * 110.36724 * 85.25264 * 22 9 7 40 40 H 1.09004 * 109.67848 * 189.78557 * 23 4 2 41 41 H 1.08997 * 109.68472 * 69.27029 * 23 4 2 42 42 H 1.09000 * 109.51243 * 172.21403 * 24 23 4 43 43 H 1.09004 * 109.51786 * 292.30981 * 24 23 4 44 44 H 1.08993 * 109.47052 * 59.99993 * 27 26 25 45 45 H 1.08998 * 109.46720 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47164 * 299.99593 * 27 26 25 47 47 H 1.08997 * 109.46648 * 60.00189 * 28 26 25 48 48 H 1.08994 * 109.46905 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47136 * 300.00489 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 7 2.0249 -0.7042 -1.1936 5 6 2.6451 -0.0360 -2.1864 6 8 2.7747 1.1686 -2.1182 7 6 3.1731 -0.7787 -3.3709 8 8 2.9419 -1.9633 -3.4968 9 7 3.9060 -0.1327 -4.2994 10 6 4.2543 1.2954 -4.2747 11 6 5.1231 1.5766 -5.5188 12 6 5.6808 0.1745 -5.8800 13 8 6.8289 -0.1394 -5.0893 14 6 5.9983 0.0818 -7.3502 15 1 5.9256 0.9599 -7.9748 16 6 6.3817 -1.1240 -7.8979 17 7 6.4698 -2.1933 -7.1375 18 14 6.7760 -1.2388 -9.7203 19 1 7.9013 -0.3248 -10.0418 20 1 7.1600 -2.6333 -10.0568 21 1 5.5807 -0.8496 -10.5108 22 6 4.4854 -0.7396 -5.5115 23 6 1.8240 -2.1600 -1.2705 24 6 2.3260 -2.7876 0.0348 25 8 1.7168 -2.1204 1.1427 26 6 2.0464 -0.7329 1.2434 27 6 1.3919 -0.1418 2.4937 28 6 3.5651 -0.5738 1.3379 29 1 -0.3633 0.5058 0.8946 30 1 -0.3634 0.5219 -0.8853 31 1 -0.3633 -1.0276 -0.0092 32 1 3.3472 1.8989 -4.3094 33 1 4.8194 1.5236 -3.3709 34 1 5.9342 2.2640 -5.2783 35 1 4.5115 1.9694 -6.3311 36 1 7.1543 -1.0420 -5.2094 37 1 6.7392 -3.0417 -7.5229 38 1 4.8323 -1.7511 -5.3005 39 1 3.7524 -0.7497 -6.3182 40 1 2.3864 -2.5641 -2.1123 41 1 0.7638 -2.3780 -1.3988 42 1 2.0611 -3.8447 0.0559 43 1 3.4092 -2.6826 0.0964 44 1 1.7560 -0.6664 3.3770 45 1 1.6439 0.9159 2.5701 46 1 0.3098 -0.2538 2.4249 47 1 4.0305 -0.9936 0.4461 48 1 3.8155 0.4842 1.4142 49 1 3.9313 -1.0989 2.2202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327025070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:25 Heat of formation + Delta-G solvation = -152.365433 kcal Electronic energy + Delta-G solvation = -32203.317920 eV Core-core repulsion = 27937.915506 eV Total energy + Delta-G solvation = -4265.402414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38330 -40.99797 -39.57228 -39.03327 -36.54144 -35.75744 -35.13360 -34.25211 -32.01353 -31.20877 -30.04284 -29.73447 -28.41445 -27.64462 -25.90418 -24.59307 -24.33891 -23.05823 -21.56023 -20.73294 -19.93840 -19.14841 -18.41772 -18.33716 -17.60666 -17.36984 -17.19935 -16.95235 -16.49358 -16.28746 -15.99708 -15.79058 -15.42726 -14.96380 -14.82192 -14.70151 -14.57509 -14.33730 -14.02866 -13.88006 -13.60311 -13.52568 -13.34718 -13.15737 -13.02854 -12.99146 -12.82720 -12.71089 -12.63536 -12.37872 -12.35716 -12.29188 -12.16727 -12.07653 -11.98865 -11.45339 -11.20616 -11.13056 -10.67687 -10.40166 -10.17794 -9.78302 -9.60959 -8.25941 -6.42565 0.24832 1.09848 1.44892 1.46049 1.53445 2.01231 2.21740 2.39441 2.70248 2.98846 3.02395 3.48051 3.71955 3.73603 3.88922 3.93531 4.02001 4.11193 4.12959 4.15399 4.26604 4.28448 4.45147 4.54927 4.62378 4.66262 4.70185 4.72294 4.75196 4.81143 4.83500 4.89604 4.94260 5.00034 5.03719 5.10303 5.13437 5.18114 5.28890 5.30797 5.38857 5.41851 5.73336 5.88453 6.03675 6.14422 6.24723 6.54439 6.65793 6.83368 7.25651 7.34099 8.79495 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023684 B = 0.002927 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.956451 B = 9563.253067 C = 9908.632020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 H 0.100 0.900 4 N -0.573 5.573 5 C 0.515 3.485 6 O -0.531 6.531 7 C 0.504 3.496 8 O -0.542 6.542 9 N -0.578 5.578 10 C 0.119 3.881 11 C -0.115 4.115 12 C 0.234 3.766 13 O -0.587 6.587 14 C -0.557 4.557 15 H 0.069 0.931 16 C 0.030 3.970 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.107 3.893 23 C 0.020 3.980 24 C 0.050 3.950 25 O -0.374 6.374 26 C 0.104 3.896 27 C -0.135 4.135 28 C -0.176 4.176 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.374 0.626 37 H 0.271 0.729 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 2.603 16.669 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.005 3.995 3 H 0.118 0.882 4 N -0.307 5.307 5 C 0.297 3.703 6 O -0.409 6.409 7 C 0.289 3.711 8 O -0.423 6.423 9 N -0.309 5.309 10 C -0.003 4.003 11 C -0.153 4.153 12 C 0.194 3.806 13 O -0.395 6.395 14 C -0.595 4.595 15 H 0.087 0.913 16 C -0.171 4.171 17 N -0.552 5.552 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.015 4.015 23 C -0.101 4.101 24 C -0.027 4.027 25 O -0.293 6.293 26 C 0.064 3.936 27 C -0.192 4.192 28 C -0.234 4.234 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.932 2.962 17.021 20.445 hybrid contribution 0.677 -0.981 -1.669 2.051 sum -10.255 1.980 15.353 18.569 Atomic orbital electron populations 1.22072 0.92444 1.03110 1.03289 1.22216 0.96409 0.97548 0.83368 0.88164 1.48121 1.54690 1.09689 1.18151 1.19819 0.79519 0.87114 0.83850 1.90696 1.57573 1.13979 1.78618 1.20175 0.80020 0.86819 0.84118 1.90307 1.59987 1.15804 1.76242 1.48742 1.47700 1.12352 1.22129 1.22168 0.99438 0.79572 0.99157 1.22724 0.98723 0.97186 0.96636 1.19843 0.81572 0.90105 0.89090 1.86127 1.48228 1.36355 1.68766 1.21713 1.47846 0.96049 0.93878 0.91278 1.25778 0.93647 0.95142 1.02566 1.69797 1.47132 1.00680 1.37544 0.85520 0.78811 0.77041 0.79729 1.19720 1.21034 1.19486 1.23090 0.96189 0.98939 0.83260 1.23817 1.04557 0.78507 1.03237 1.23044 0.97333 0.98047 0.84280 1.87970 1.71545 1.21791 1.48041 1.21984 0.94525 0.82009 0.95062 1.21857 1.01809 1.01358 0.94186 1.22381 0.95550 1.03310 1.02109 0.88222 0.93226 0.91761 0.89743 0.91460 0.89623 0.88950 0.77674 0.91993 0.91934 0.92489 0.84009 0.89850 0.85467 0.93091 0.90746 0.89338 0.90274 0.94334 0.90732 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.68 71.98 0.62 -2.13 16 2 C 0.11 2.37 2.23 44.96 0.10 2.47 16 3 H 0.10 2.39 7.09 -2.39 -0.02 2.37 16 4 N -0.57 -16.05 2.24 -795.06 -1.78 -17.83 16 5 C 0.51 17.69 7.73 87.27 0.67 18.37 16 6 O -0.53 -19.09 13.65 -3.24 -0.04 -19.14 16 7 C 0.50 20.08 7.84 87.27 0.68 20.76 16 8 O -0.54 -22.68 13.30 -3.25 -0.04 -22.73 16 9 N -0.58 -24.23 3.33 -813.32 -2.70 -26.94 16 10 C 0.12 4.45 5.49 86.73 0.48 4.93 16 11 C -0.11 -4.53 6.13 31.79 0.19 -4.33 16 12 C 0.23 11.19 0.87 -10.14 -0.01 11.18 16 13 O -0.59 -29.74 13.16 -148.98 -1.96 -31.70 16 14 C -0.56 -28.33 8.27 25.60 0.21 -28.12 16 15 H 0.07 3.41 7.79 -2.91 -0.02 3.39 16 16 C 0.03 1.53 5.29 84.66 0.45 1.98 16 17 N -0.91 -47.91 10.69 21.45 0.23 -47.68 16 18 Si 0.96 40.74 29.54 68.60 2.03 42.77 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C 0.11 5.08 5.38 86.86 0.47 5.55 16 23 C 0.02 0.51 5.99 86.35 0.52 1.03 16 24 C 0.05 1.09 6.60 72.08 0.48 1.56 16 25 O -0.37 -7.99 9.87 -148.98 -1.47 -9.46 16 26 C 0.10 2.00 0.81 -10.69 -0.01 1.99 16 27 C -0.13 -1.74 8.30 71.98 0.60 -1.14 16 28 C -0.18 -3.60 8.09 71.98 0.58 -3.01 16 29 H 0.10 1.28 6.35 -2.39 -0.02 1.26 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.21 7.20 -2.39 -0.02 1.19 16 32 H 0.08 2.89 7.58 -2.39 -0.02 2.88 16 33 H 0.07 2.54 7.72 -2.38 -0.02 2.52 16 34 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 36 H 0.37 19.58 7.57 -74.06 -0.56 19.02 16 37 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.06 3.31 7.33 -2.39 -0.02 3.29 16 39 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16 40 H 0.14 4.49 3.96 -72.85 -0.29 4.20 16 41 H 0.08 1.97 7.64 -2.39 -0.02 1.96 16 42 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.19 6.26 -2.39 -0.01 1.18 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 0.90 6.34 -2.38 -0.02 0.88 16 47 H 0.04 0.97 6.12 -2.39 -0.01 0.95 16 48 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -59.38 375.09 0.43 -58.95 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: 0.14 Total: 42.67 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 6.04 Total: 31.07 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.25 Total: -92.45 kcal Atomic # 8 Polarization: -79.50 SS G_CDS: -3.52 Total: -83.02 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -59.38 0.43 -58.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327025070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.414 kcal (2) G-P(sol) polarization free energy of solvation -59.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds