Wall clock time and date at job start Tue Mar 31 2020 23:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47113 * 2 1 4 4 C 1.53007 * 109.47137 * 240.00033 * 2 1 3 5 5 O 1.42895 * 109.47196 * 305.00218 * 4 2 1 6 6 C 1.42900 * 114.00437 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47417 * 179.97438 * 6 5 4 8 8 C 1.53002 * 117.49749 * 243.62283 * 7 6 5 9 9 C 1.53001 * 117.49710 * 174.99847 * 7 6 5 10 10 N 1.46504 * 109.47300 * 120.00287 * 2 1 3 11 11 C 1.34777 * 119.99827 * 275.00271 * 10 2 1 12 12 O 1.21345 * 120.00010 * 359.97438 * 11 10 2 13 13 C 1.49454 * 119.99788 * 179.97438 * 11 10 2 14 14 O 1.21345 * 120.00202 * 359.97438 * 13 11 10 15 15 N 1.34782 * 119.99657 * 179.97438 * 13 11 10 16 16 C 1.47021 * 125.64903 * 359.95924 * 15 13 11 17 17 C 1.54371 * 107.28632 * 181.12818 * 16 15 13 18 18 C 1.55156 * 102.92059 * 22.13773 * 17 16 15 19 19 O 1.42894 * 111.00351 * 82.64238 * 18 17 16 20 20 C 1.50705 * 111.00016 * 206.45621 * 18 17 16 21 21 H 1.07993 * 120.00222 * 356.18276 * 20 18 17 22 22 C 1.37881 * 119.99392 * 175.91314 * 20 18 17 23 23 N 1.31509 * 120.00570 * 354.23595 * 22 20 18 24 24 Si 1.86802 * 119.99449 * 174.23797 * 22 20 18 25 25 H 1.48500 * 109.47140 * 94.98922 * 24 22 20 26 26 H 1.48506 * 109.47182 * 214.98446 * 24 22 20 27 27 H 1.48500 * 109.47323 * 334.98680 * 24 22 20 28 28 C 1.47424 * 125.64568 * 179.97438 * 15 13 11 29 29 H 1.08993 * 109.46891 * 59.99536 * 1 2 3 30 30 H 1.08997 * 109.46706 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46909 * 299.99657 * 1 2 3 32 32 H 1.09001 * 109.46990 * 65.00021 * 4 2 1 33 33 H 1.08993 * 109.46824 * 185.00336 * 4 2 1 34 34 H 1.09003 * 109.46951 * 300.00036 * 6 5 4 35 35 H 1.09006 * 109.46748 * 59.99691 * 6 5 4 36 36 H 1.08998 * 115.55127 * 29.32805 * 7 6 5 37 37 H 1.09000 * 117.50137 * 359.97438 * 8 7 6 38 38 H 1.09007 * 117.49715 * 145.02532 * 8 7 6 39 39 H 1.09000 * 117.49791 * 214.97565 * 9 7 6 40 40 H 1.08995 * 117.50150 * 0.02562 * 9 7 6 41 41 H 0.96999 * 120.00200 * 94.99587 * 10 2 1 42 42 H 1.08996 * 109.87865 * 300.51069 * 16 15 13 43 43 H 1.09004 * 109.88436 * 61.67611 * 16 15 13 44 44 H 1.09003 * 110.70184 * 263.79158 * 17 16 15 45 45 H 1.08998 * 110.75668 * 140.50398 * 17 16 15 46 46 H 0.96708 * 113.99643 * 183.17715 * 19 18 17 47 47 H 0.96997 * 120.00732 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.36723 * 36.99330 * 28 15 13 49 49 H 1.09001 * 110.45885 * 274.72191 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 1.4703 -2.0303 -1.3095 6 6 1.8836 -2.7925 -2.4454 7 6 1.2162 -4.1687 -2.4065 8 6 2.1256 -5.3911 -2.2667 9 6 1.4399 -5.0964 -3.6024 10 7 2.0184 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8589 1.1591 2.4116 13 6 2.6448 -0.7231 3.5775 14 8 2.9326 -1.9007 3.5232 15 7 2.7739 -0.0506 4.7384 16 6 2.4636 1.3717 4.9438 17 6 2.7909 1.7048 6.4152 18 6 3.7990 0.5922 6.8068 19 8 5.1217 0.9270 6.3822 20 6 3.7616 0.3271 8.2899 21 1 3.1340 0.9290 8.9303 22 6 4.5245 -0.6874 8.8282 23 7 5.1961 -1.4957 8.0375 24 14 4.6040 -0.9139 10.6807 25 1 3.6009 -1.9257 11.0992 26 1 5.9622 -1.3750 11.0652 27 1 4.3121 0.3790 11.3505 28 6 3.2501 -0.6194 6.0124 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7517 -0.1583 -2.1370 33 1 3.1263 -0.7995 -1.2056 34 1 1.5916 -2.2724 -3.3578 35 1 2.9667 -2.9137 -2.4270 36 1 0.2436 -4.2058 -1.9158 37 1 3.1994 -5.2150 -2.2029 38 1 1.7514 -6.2328 -1.6839 39 1 0.6147 -5.7441 -3.8982 40 1 2.0629 -4.7265 -4.4167 41 1 2.2491 -1.6318 1.1526 42 1 3.0749 1.9840 4.2810 43 1 1.4065 1.5525 4.7488 44 1 1.8941 1.6472 7.0321 45 1 3.2526 2.6889 6.4950 46 1 5.7781 0.2398 6.5616 47 1 5.7331 -2.2092 8.4162 48 1 4.0432 -1.3449 5.8311 49 1 2.4265 -1.0860 6.5528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327036707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:38 Heat of formation + Delta-G solvation = -137.533873 kcal Electronic energy + Delta-G solvation = -30127.291639 eV Core-core repulsion = 25862.532369 eV Total energy + Delta-G solvation = -4264.759269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38414 -39.06449 -38.36979 -37.18009 -37.06651 -35.25655 -34.16818 -32.24249 -31.16127 -30.18994 -27.91652 -27.84825 -26.26738 -25.81118 -23.97295 -22.74272 -22.21792 -21.11124 -20.69263 -19.80997 -19.44311 -17.39935 -17.35801 -17.10359 -16.54195 -16.26095 -15.96809 -15.56858 -15.17353 -15.00798 -14.78958 -14.48611 -14.28426 -14.17913 -13.65395 -13.47982 -13.06071 -12.95977 -12.80225 -12.64706 -12.44541 -12.23500 -11.92028 -11.84529 -11.68206 -11.50864 -11.40811 -11.25491 -11.04220 -11.02577 -10.77509 -10.74866 -10.59988 -10.54104 -10.49001 -10.20378 -9.85447 -9.34803 -9.19946 -9.07124 -8.72020 -8.39688 -7.85806 -6.29451 -4.38913 1.85770 2.68903 3.09017 3.20005 3.28292 3.32099 3.51004 3.67133 3.95407 4.26276 4.37041 4.50624 4.53264 4.67508 4.77955 4.80680 4.92331 4.97651 4.97778 5.11853 5.20175 5.23353 5.26406 5.36122 5.51416 5.54353 5.56927 5.73757 5.79495 5.81041 5.83445 5.87021 6.08548 6.14568 6.28656 6.40859 6.54731 6.75492 6.82500 6.84971 6.88562 7.21667 7.29681 7.37219 7.72683 7.93382 8.01675 8.11149 8.50859 8.65258 9.28782 9.34508 10.77095 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002287 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.254616 B =12240.705002 C =13434.443823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.103 0.897 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.176 4.176 9 C -0.176 4.176 10 N -0.700 5.700 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.507 3.493 14 O -0.537 6.537 15 N -0.575 5.575 16 C 0.112 3.888 17 C -0.121 4.121 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.537 4.537 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.892 5.892 24 Si 0.904 3.096 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.093 3.907 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.416 0.584 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.380 0.620 47 H 0.270 0.730 48 H 0.091 0.909 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 -1.755 -21.415 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.121 0.879 4 C -0.023 4.023 5 O -0.299 6.299 6 C 0.017 3.983 7 C -0.172 4.172 8 C -0.213 4.213 9 C -0.213 4.213 10 N -0.354 5.354 11 C 0.293 3.707 12 O -0.395 6.395 13 C 0.289 3.711 14 O -0.416 6.416 15 N -0.307 5.307 16 C -0.010 4.010 17 C -0.159 4.159 18 C 0.207 3.793 19 O -0.389 6.389 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.531 5.531 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.028 4.028 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.253 0.747 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.230 0.770 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.543 -1.225 -21.514 22.831 hybrid contribution 0.605 -1.153 0.866 1.564 sum -6.937 -2.377 -20.648 21.911 Atomic orbital electron populations 1.22082 0.94260 1.03134 1.02317 1.21093 0.95445 0.96715 0.82553 0.87923 1.22821 0.97740 0.84236 0.97538 1.87898 1.70209 1.26158 1.45601 1.21999 0.97528 0.90324 0.88402 1.22130 1.01526 0.90196 1.03350 1.23091 0.98859 0.99521 0.99821 1.22975 1.03617 1.02774 0.91896 1.45790 1.65939 1.15216 1.08495 1.20440 0.78529 0.86975 0.84791 1.90712 1.48554 1.15433 1.84800 1.19582 0.81145 0.86744 0.83640 1.90727 1.51020 1.15302 1.84529 1.48673 1.60406 1.12056 1.09578 1.22135 0.99997 0.80951 0.97966 1.22720 0.99524 1.00375 0.93318 1.19637 0.80491 0.87542 0.91611 1.86129 1.19581 1.48057 1.85118 1.21472 1.27312 1.16947 0.91831 0.91351 1.25095 0.94575 0.94588 0.99040 1.69750 1.30480 1.17598 1.35243 0.86385 0.77578 0.78493 0.84433 1.20527 1.20930 1.19609 1.23499 0.99344 0.99916 0.80033 0.91746 0.91292 0.91949 0.91544 0.92298 0.92910 0.93062 0.86774 0.88556 0.88454 0.88427 0.88750 0.74735 0.91232 0.91790 0.90381 0.90548 0.77016 0.91990 0.89087 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.29 37.16 0.35 -1.29 16 2 C 0.15 1.57 2.98 -67.92 -0.20 1.37 16 3 H 0.10 1.12 7.58 -51.93 -0.39 0.72 16 4 C 0.05 0.45 5.68 37.16 0.21 0.66 16 5 O -0.38 -3.66 9.19 -35.23 -0.32 -3.98 16 6 C 0.09 0.72 6.22 37.15 0.23 0.96 16 7 C -0.15 -1.19 6.06 -90.62 -0.55 -1.74 16 8 C -0.18 -1.29 10.18 -26.73 -0.27 -1.56 16 9 C -0.18 -1.09 10.25 -26.73 -0.27 -1.36 16 10 N -0.70 -9.66 5.05 -54.23 -0.27 -9.94 16 11 C 0.51 8.84 7.82 -11.58 -0.09 8.75 16 12 O -0.52 -9.44 13.79 5.50 0.08 -9.37 16 13 C 0.51 10.46 7.91 -11.58 -0.09 10.37 16 14 O -0.54 -12.11 16.73 5.50 0.09 -12.02 16 15 N -0.58 -12.42 3.33 -170.98 -0.57 -12.99 16 16 C 0.11 2.20 5.49 -3.04 -0.02 2.18 16 17 C -0.12 -2.50 6.13 -24.87 -0.15 -2.65 16 18 C 0.25 6.02 0.88 -89.61 -0.08 5.94 16 19 O -0.58 -14.79 13.17 -35.23 -0.46 -15.26 16 20 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 21 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 22 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 23 N -0.89 -23.54 10.70 55.43 0.59 -22.95 16 24 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.09 2.24 5.40 -2.52 -0.01 2.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.75 7.56 -51.93 -0.39 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.42 5.75 7.85 -40.82 -0.32 5.43 16 42 H 0.07 1.37 7.58 -51.93 -0.39 0.98 16 43 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 44 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.38 9.85 7.54 45.56 0.34 10.19 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.09 2.43 7.31 -51.93 -0.38 2.05 16 49 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -29.39 403.22 -8.51 -37.91 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.37 Total: 15.93 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -1.33 Total: 11.40 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.25 Total: -45.88 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.62 Total: -40.62 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.39 -8.51 -37.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327036707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.626 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds