Wall clock time and date at job start Tue Mar 31 2020 23:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47455 * 2 1 4 4 C 1.53009 * 109.46771 * 239.99839 * 2 1 3 5 5 O 1.42899 * 109.47113 * 305.00199 * 4 2 1 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53003 * 117.49371 * 243.61887 * 7 6 5 9 9 C 1.53001 * 117.49608 * 174.99962 * 7 6 5 10 10 N 1.46500 * 109.47275 * 120.00329 * 2 1 3 11 11 C 1.34773 * 119.99804 * 274.99869 * 10 2 1 12 12 O 1.21351 * 120.00188 * 359.97438 * 11 10 2 13 13 C 1.49446 * 120.00155 * 179.97438 * 11 10 2 14 14 O 1.21342 * 119.99893 * 0.02562 * 13 11 10 15 15 N 1.34782 * 120.00134 * 179.97438 * 13 11 10 16 16 C 1.47022 * 125.64649 * 359.69834 * 15 13 11 17 17 C 1.54335 * 107.26205 * 178.84200 * 16 15 13 18 18 C 1.55160 * 103.02395 * 338.14418 * 17 16 15 19 19 O 1.42900 * 110.99638 * 277.22850 * 18 17 16 20 20 C 1.50696 * 111.03476 * 153.39412 * 18 17 16 21 21 H 1.07995 * 120.00771 * 6.33171 * 20 18 17 22 22 C 1.37884 * 119.99789 * 186.32750 * 20 18 17 23 23 N 1.31516 * 119.99599 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00383 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47251 * 89.99893 * 24 22 20 26 26 H 1.48497 * 109.47289 * 210.00051 * 24 22 20 27 27 H 1.48508 * 109.47144 * 330.00079 * 24 22 20 28 28 C 1.47418 * 125.64625 * 179.97438 * 15 13 11 29 29 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 300.00593 * 1 2 3 31 31 H 1.09005 * 109.46835 * 59.99940 * 1 2 3 32 32 H 1.09007 * 109.46516 * 185.00132 * 4 2 1 33 33 H 1.09004 * 109.47113 * 65.00600 * 4 2 1 34 34 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 35 35 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 36 36 H 1.08995 * 115.55630 * 29.32572 * 7 6 5 37 37 H 1.08998 * 117.50656 * 0.02562 * 8 7 6 38 38 H 1.09001 * 117.49674 * 145.02590 * 8 7 6 39 39 H 1.09003 * 117.49710 * 214.97494 * 9 7 6 40 40 H 1.08998 * 117.50185 * 359.97438 * 9 7 6 41 41 H 0.97000 * 120.00193 * 94.99540 * 10 2 1 42 42 H 1.08998 * 109.88271 * 298.38840 * 16 15 13 43 43 H 1.08997 * 109.88133 * 59.55630 * 16 15 13 44 44 H 1.08996 * 110.85068 * 219.67071 * 17 16 15 45 45 H 1.09006 * 110.66337 * 96.52548 * 17 16 15 46 46 H 0.96702 * 113.99125 * 173.64866 * 19 18 17 47 47 H 0.96999 * 120.00281 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.37226 * 322.93932 * 28 15 13 49 49 H 1.09006 * 110.36382 * 85.15446 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4700 -2.0304 -1.3095 6 6 1.8843 -2.7930 -2.4448 7 6 1.2158 -4.1687 -2.4065 8 6 2.1241 -5.3917 -2.2656 9 6 1.4403 -5.0967 -3.6021 10 7 2.0183 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8589 1.1592 2.4115 13 6 2.6447 -0.7230 3.5774 14 8 2.9333 -1.9003 3.5229 15 7 2.7739 -0.0505 4.7383 16 6 2.4688 1.3732 4.9424 17 6 2.7389 1.6910 6.4283 18 6 2.6488 0.2981 7.1058 19 8 1.2903 -0.0521 7.3777 20 6 3.4772 0.2540 8.3639 21 1 3.9470 1.1536 8.7331 22 6 3.6353 -0.9351 9.0438 23 7 3.0627 -2.0305 8.5946 24 14 4.6615 -0.9898 10.6036 25 1 3.7926 -0.7211 11.7776 26 1 5.2798 -2.3328 10.7425 27 1 5.7280 0.0410 10.5310 28 6 3.2501 -0.6193 6.0123 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.7516 -0.1583 -2.1371 34 1 2.9674 -2.9142 -2.4256 35 1 1.5930 -2.2731 -3.3575 36 1 0.2426 -4.2051 -1.9170 37 1 3.1979 -5.2164 -2.1997 38 1 1.7486 -6.2331 -1.6831 39 1 0.6149 -5.7438 -3.8988 40 1 2.0639 -4.7270 -4.4160 41 1 2.2490 -1.6318 1.1525 42 1 3.1104 1.9845 4.3078 43 1 1.4216 1.5650 4.7086 44 1 1.9784 2.3632 6.8257 45 1 3.7337 2.1182 6.5556 46 1 1.1756 -0.9526 7.7112 47 1 3.1742 -2.8672 9.0727 48 1 2.8868 -1.6400 6.1314 49 1 4.3392 -0.5977 6.0537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327036708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:40 Heat of formation + Delta-G solvation = -137.539149 kcal Electronic energy + Delta-G solvation = -30145.003270 eV Core-core repulsion = 25880.243772 eV Total energy + Delta-G solvation = -4264.759498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39228 -39.07013 -38.37524 -37.18221 -37.07026 -35.25647 -34.14832 -32.23817 -31.16232 -30.18889 -27.91842 -27.84951 -26.26666 -25.81346 -23.97066 -22.74394 -22.22651 -21.11211 -20.69497 -19.81018 -19.45690 -17.40229 -17.34699 -17.09442 -16.54832 -16.27147 -15.92545 -15.61218 -15.16729 -15.02436 -14.80486 -14.48063 -14.28121 -14.18982 -13.64604 -13.48070 -13.05479 -12.96476 -12.82460 -12.65124 -12.40420 -12.24449 -11.92132 -11.84688 -11.64677 -11.49294 -11.39902 -11.24689 -11.05492 -11.02739 -10.78271 -10.76567 -10.60168 -10.55354 -10.46334 -10.19698 -9.85897 -9.36381 -9.20330 -9.08184 -8.69248 -8.38763 -7.87176 -6.28650 -4.38167 1.84964 2.67967 3.08875 3.21141 3.28629 3.31087 3.51063 3.66164 3.94550 4.26696 4.36775 4.50532 4.53167 4.67318 4.77370 4.80000 4.91968 4.96962 4.99089 5.11325 5.20063 5.23116 5.26437 5.35962 5.51628 5.54425 5.57815 5.73777 5.81006 5.81612 5.84048 5.85563 6.08633 6.16705 6.28795 6.40650 6.53971 6.75089 6.81924 6.83806 6.87178 7.19562 7.30191 7.36657 7.73285 7.93177 8.02703 8.10242 8.49838 8.66091 9.29345 9.37924 10.78554 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002305 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.007090 B =12143.769129 C =13338.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.103 0.897 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.176 4.176 9 C -0.176 4.176 10 N -0.699 5.699 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.507 3.493 14 O -0.537 6.537 15 N -0.575 5.575 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.893 5.893 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.092 3.908 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.416 0.584 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.381 0.619 47 H 0.270 0.730 48 H 0.090 0.910 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -0.524 -22.859 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.121 0.879 4 C -0.023 4.023 5 O -0.298 6.298 6 C 0.018 3.982 7 C -0.172 4.172 8 C -0.213 4.213 9 C -0.213 4.213 10 N -0.354 5.354 11 C 0.293 3.707 12 O -0.395 6.395 13 C 0.289 3.711 14 O -0.416 6.416 15 N -0.307 5.307 16 C -0.010 4.010 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.390 6.390 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.029 4.029 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.253 0.747 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.230 0.770 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.397 0.029 -22.943 23.067 hybrid contribution 0.949 -1.098 0.729 1.624 sum -1.448 -1.069 -22.214 22.287 Atomic orbital electron populations 1.22087 0.94209 1.03206 1.02363 1.21092 0.95517 0.96651 0.82524 0.87947 1.22822 0.97660 0.84276 0.97553 1.87909 1.70157 1.26121 1.45632 1.21998 0.97472 0.90345 0.88421 1.22135 1.01552 0.90174 1.03357 1.23086 0.98843 0.99543 0.99817 1.22973 1.03624 1.02779 0.91878 1.45789 1.65930 1.15219 1.08494 1.20429 0.78570 0.86990 0.84746 1.90715 1.48555 1.15497 1.84716 1.19581 0.81071 0.86712 0.83727 1.90727 1.51102 1.15213 1.84532 1.48661 1.60488 1.12084 1.09481 1.22131 1.00955 0.80538 0.97418 1.22711 1.01826 0.99013 0.92419 1.19637 0.80876 0.87920 0.90798 1.86133 1.27838 1.37160 1.87822 1.21460 1.31740 0.95525 1.08720 0.91392 1.25096 0.95050 0.95331 0.97834 1.69712 1.43712 0.99925 1.39840 0.86386 0.80188 0.77499 0.82732 1.20382 1.21032 1.19689 1.23470 0.98841 1.00909 0.79642 0.91254 0.91873 0.91751 0.92365 0.91546 0.93092 0.92916 0.86737 0.88588 0.88441 0.88416 0.88764 0.74736 0.91787 0.91192 0.90558 0.90399 0.76954 0.91972 0.89122 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.29 37.16 0.35 -1.35 16 2 C 0.15 1.56 2.98 -67.93 -0.20 1.36 16 3 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.45 5.68 37.16 0.21 0.66 16 5 O -0.38 -3.66 9.19 -35.23 -0.32 -3.98 16 6 C 0.09 0.72 6.22 37.16 0.23 0.95 16 7 C -0.15 -1.20 6.06 -90.62 -0.55 -1.75 16 8 C -0.18 -1.29 10.18 -26.73 -0.27 -1.56 16 9 C -0.18 -1.09 10.25 -26.73 -0.27 -1.36 16 10 N -0.70 -9.63 5.05 -54.24 -0.27 -9.90 16 11 C 0.51 8.82 7.82 -11.59 -0.09 8.73 16 12 O -0.52 -9.42 13.79 5.50 0.08 -9.34 16 13 C 0.51 10.43 7.91 -11.58 -0.09 10.34 16 14 O -0.54 -12.06 16.73 5.50 0.09 -11.97 16 15 N -0.58 -12.39 3.33 -171.04 -0.57 -12.96 16 16 C 0.11 2.20 5.49 -3.06 -0.02 2.18 16 17 C -0.12 -2.51 6.13 -24.89 -0.15 -2.66 16 18 C 0.25 6.05 0.87 -89.63 -0.08 5.97 16 19 O -0.58 -14.92 13.16 -35.23 -0.46 -15.38 16 20 C -0.54 -13.89 8.27 -34.44 -0.28 -14.17 16 21 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 22 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 23 N -0.89 -23.65 10.69 55.43 0.59 -23.06 16 24 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.09 2.21 5.38 -2.54 -0.01 2.20 16 29 H 0.07 0.78 7.56 -51.93 -0.39 0.38 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.36 7.88 -51.93 -0.41 -0.05 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.68 8.03 -51.93 -0.42 0.26 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.42 5.73 7.85 -40.82 -0.32 5.41 16 42 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 43 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 46 H 0.38 9.94 7.56 45.56 0.34 10.29 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 48 H 0.09 2.41 7.33 -51.93 -0.38 2.03 16 49 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -29.49 403.26 -8.51 -38.01 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -7.37 Total: 16.01 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -1.33 Total: 11.25 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.25 Total: -45.91 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.62 Total: -40.67 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.49 -8.51 -38.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327036708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.533 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds