Wall clock time and date at job start Tue Mar 31 2020 23:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47455 * 2 1 4 4 C 1.53009 * 109.46771 * 239.99839 * 2 1 3 5 5 O 1.42899 * 109.47113 * 305.00199 * 4 2 1 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53003 * 117.49371 * 243.61887 * 7 6 5 9 9 C 1.53001 * 117.49608 * 174.99962 * 7 6 5 10 10 N 1.46500 * 109.47275 * 120.00329 * 2 1 3 11 11 C 1.34773 * 119.99804 * 274.99869 * 10 2 1 12 12 O 1.21351 * 120.00188 * 359.97438 * 11 10 2 13 13 C 1.49446 * 120.00155 * 179.97438 * 11 10 2 14 14 O 1.21342 * 119.99893 * 0.02562 * 13 11 10 15 15 N 1.34782 * 120.00134 * 179.97438 * 13 11 10 16 16 C 1.47022 * 125.64649 * 359.69834 * 15 13 11 17 17 C 1.54335 * 107.26205 * 178.84200 * 16 15 13 18 18 C 1.55160 * 103.02395 * 338.14418 * 17 16 15 19 19 O 1.42900 * 110.99638 * 277.22850 * 18 17 16 20 20 C 1.50696 * 111.03476 * 153.39412 * 18 17 16 21 21 H 1.07995 * 120.00771 * 6.33171 * 20 18 17 22 22 C 1.37884 * 119.99789 * 186.32750 * 20 18 17 23 23 N 1.31516 * 119.99599 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00383 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47251 * 89.99893 * 24 22 20 26 26 H 1.48497 * 109.47289 * 210.00051 * 24 22 20 27 27 H 1.48508 * 109.47144 * 330.00079 * 24 22 20 28 28 C 1.47418 * 125.64625 * 179.97438 * 15 13 11 29 29 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47024 * 300.00593 * 1 2 3 31 31 H 1.09005 * 109.46835 * 59.99940 * 1 2 3 32 32 H 1.09007 * 109.46516 * 185.00132 * 4 2 1 33 33 H 1.09004 * 109.47113 * 65.00600 * 4 2 1 34 34 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 35 35 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 36 36 H 1.08995 * 115.55630 * 29.32572 * 7 6 5 37 37 H 1.08998 * 117.50656 * 0.02562 * 8 7 6 38 38 H 1.09001 * 117.49674 * 145.02590 * 8 7 6 39 39 H 1.09003 * 117.49710 * 214.97494 * 9 7 6 40 40 H 1.08998 * 117.50185 * 359.97438 * 9 7 6 41 41 H 0.97000 * 120.00193 * 94.99540 * 10 2 1 42 42 H 1.08998 * 109.88271 * 298.38840 * 16 15 13 43 43 H 1.08997 * 109.88133 * 59.55630 * 16 15 13 44 44 H 1.08996 * 110.85068 * 219.67071 * 17 16 15 45 45 H 1.09006 * 110.66337 * 96.52548 * 17 16 15 46 46 H 0.96702 * 113.99125 * 173.64866 * 19 18 17 47 47 H 0.96999 * 120.00281 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.37226 * 322.93932 * 28 15 13 49 49 H 1.09006 * 110.36382 * 85.15446 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.4700 -2.0304 -1.3095 6 6 1.8843 -2.7930 -2.4448 7 6 1.2158 -4.1687 -2.4065 8 6 2.1241 -5.3917 -2.2656 9 6 1.4403 -5.0967 -3.6021 10 7 2.0183 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8589 1.1592 2.4115 13 6 2.6447 -0.7230 3.5774 14 8 2.9333 -1.9003 3.5229 15 7 2.7739 -0.0505 4.7383 16 6 2.4688 1.3732 4.9424 17 6 2.7389 1.6910 6.4283 18 6 2.6488 0.2981 7.1058 19 8 1.2903 -0.0521 7.3777 20 6 3.4772 0.2540 8.3639 21 1 3.9470 1.1536 8.7331 22 6 3.6353 -0.9351 9.0438 23 7 3.0627 -2.0305 8.5946 24 14 4.6615 -0.9898 10.6036 25 1 3.7926 -0.7211 11.7776 26 1 5.2798 -2.3328 10.7425 27 1 5.7280 0.0410 10.5310 28 6 3.2501 -0.6193 6.0123 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.7516 -0.1583 -2.1371 34 1 2.9674 -2.9142 -2.4256 35 1 1.5930 -2.2731 -3.3575 36 1 0.2426 -4.2051 -1.9170 37 1 3.1979 -5.2164 -2.1997 38 1 1.7486 -6.2331 -1.6831 39 1 0.6149 -5.7438 -3.8988 40 1 2.0639 -4.7270 -4.4160 41 1 2.2490 -1.6318 1.1525 42 1 3.1104 1.9845 4.3078 43 1 1.4216 1.5650 4.7086 44 1 1.9784 2.3632 6.8257 45 1 3.7337 2.1182 6.5556 46 1 1.1756 -0.9526 7.7112 47 1 3.1742 -2.8672 9.0727 48 1 2.8868 -1.6400 6.1314 49 1 4.3392 -0.5977 6.0537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327036708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:40 Heat of formation + Delta-G solvation = -158.724263 kcal Electronic energy + Delta-G solvation = -30145.921925 eV Core-core repulsion = 25880.243772 eV Total energy + Delta-G solvation = -4265.678154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85171 -40.26752 -39.41219 -38.87502 -37.83384 -36.44680 -35.79780 -34.24577 -32.19818 -31.94820 -29.70033 -28.52884 -27.72146 -26.87584 -25.56648 -23.72344 -23.25436 -21.90143 -21.56279 -21.54502 -20.96489 -19.15841 -18.77043 -18.27356 -17.70047 -17.23947 -17.07992 -17.07399 -16.81451 -16.29494 -16.11064 -15.75458 -15.43133 -15.30726 -14.89966 -14.70025 -14.66788 -14.46740 -14.13826 -13.96200 -13.53188 -13.35058 -13.32259 -13.27289 -12.84683 -12.74751 -12.58121 -12.53037 -12.39309 -12.36024 -12.22565 -12.11407 -12.09935 -11.96747 -11.32889 -11.21999 -11.18238 -10.75539 -10.57588 -10.43872 -10.34533 -10.31859 -9.64509 -8.25268 -6.42249 0.34537 1.27575 1.44076 1.45831 1.55274 2.12221 2.36977 2.45148 2.56933 2.95826 3.00653 3.32165 3.69793 3.77330 3.90803 3.96459 4.02891 4.05580 4.13084 4.15311 4.32534 4.35424 4.37248 4.44986 4.51200 4.61171 4.65697 4.71142 4.74049 4.77511 4.77997 4.92478 4.97624 5.01717 5.05815 5.14789 5.22400 5.24564 5.25014 5.33172 5.36423 5.43357 5.74186 5.98943 6.07243 6.23216 6.37453 6.62104 6.68304 6.93078 7.26037 7.34393 8.80403 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002305 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.007090 B =12143.769129 C =13338.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.109 0.891 4 C 0.058 3.942 5 O -0.401 6.401 6 C 0.093 3.907 7 C -0.169 4.169 8 C -0.189 4.189 9 C -0.159 4.159 10 N -0.684 5.684 11 C 0.519 3.481 12 O -0.528 6.528 13 C 0.499 3.501 14 O -0.563 6.563 15 N -0.583 5.583 16 C 0.120 3.880 17 C -0.115 4.115 18 C 0.232 3.768 19 O -0.588 6.588 20 C -0.554 4.554 21 H 0.071 0.929 22 C 0.026 3.974 23 N -0.915 5.915 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.106 3.894 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.416 0.584 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.374 0.626 47 H 0.270 0.730 48 H 0.057 0.943 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 0.671 -24.724 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.127 0.873 4 C -0.019 4.019 5 O -0.321 6.321 6 C 0.017 3.983 7 C -0.187 4.187 8 C -0.226 4.226 9 C -0.196 4.196 10 N -0.337 5.337 11 C 0.299 3.701 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.443 6.443 15 N -0.315 5.315 16 C -0.002 4.002 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.396 6.396 20 C -0.592 4.592 21 H 0.089 0.911 22 C -0.175 4.175 23 N -0.554 5.554 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.189 1.189 28 C -0.016 4.016 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.253 0.747 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.223 0.777 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.956 1.242 -24.854 24.961 hybrid contribution 0.770 -1.529 1.244 2.117 sum -1.186 -0.288 -23.609 23.641 Atomic orbital electron populations 1.22036 0.93966 1.02666 1.02628 1.21414 0.95662 0.97084 0.82010 0.87321 1.22842 0.97882 0.84036 0.97097 1.87883 1.70612 1.26824 1.46765 1.22099 0.97702 0.90048 0.88431 1.22172 1.01089 0.90734 1.04698 1.23143 0.98953 0.99391 1.01075 1.23053 1.03473 1.01615 0.91471 1.45857 1.64376 1.15170 1.08340 1.19746 0.79105 0.86719 0.84521 1.90709 1.49501 1.15533 1.84731 1.20319 0.80254 0.86601 0.84549 1.90701 1.51992 1.16473 1.85141 1.48713 1.60770 1.12906 1.09106 1.22161 1.01372 0.79554 0.97110 1.22725 1.03097 0.96969 0.92508 1.19876 0.80041 0.90085 0.90786 1.86126 1.28945 1.36662 1.87827 1.21753 1.32143 0.95775 1.09557 0.91116 1.25837 0.96032 0.95036 1.00562 1.69827 1.44540 1.00247 1.40793 0.85428 0.78821 0.77431 0.79191 1.20175 1.21071 1.18896 1.23049 0.97953 0.99255 0.81354 0.92160 0.94052 0.89001 0.91713 0.88523 0.92613 0.91159 0.88072 0.88430 0.88914 0.87717 0.87364 0.74716 0.89543 0.91301 0.89639 0.88861 0.77743 0.92066 0.92469 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.29 71.98 0.67 -2.34 16 2 C 0.14 2.73 2.98 44.99 0.13 2.86 16 3 H 0.11 2.04 7.58 -2.39 -0.02 2.02 16 4 C 0.06 0.80 5.68 71.99 0.41 1.21 16 5 O -0.40 -7.02 9.19 -148.98 -1.37 -8.39 16 6 C 0.09 1.24 6.22 71.98 0.45 1.69 16 7 C -0.17 -2.47 6.06 -10.79 -0.07 -2.54 16 8 C -0.19 -2.65 10.18 30.60 0.31 -2.34 16 9 C -0.16 -1.71 10.25 30.60 0.31 -1.40 16 10 N -0.68 -18.16 5.05 -443.87 -2.24 -20.41 16 11 C 0.52 17.54 7.82 87.27 0.68 18.22 16 12 O -0.53 -18.44 13.79 -3.25 -0.04 -18.48 16 13 C 0.50 20.72 7.91 87.27 0.69 21.41 16 14 O -0.56 -25.89 16.73 -3.22 -0.05 -25.95 16 15 N -0.58 -25.28 3.33 -813.41 -2.71 -27.99 16 16 C 0.12 4.57 5.49 86.73 0.48 5.04 16 17 C -0.12 -4.62 6.13 31.79 0.19 -4.43 16 18 C 0.23 11.42 0.87 -10.15 -0.01 11.41 16 19 O -0.59 -30.77 13.16 -148.98 -1.96 -32.73 16 20 C -0.55 -28.78 8.27 25.60 0.21 -28.56 16 21 H 0.07 3.55 7.79 -2.91 -0.02 3.52 16 22 C 0.03 1.37 5.29 84.66 0.45 1.82 16 23 N -0.92 -49.53 10.69 21.45 0.23 -49.30 16 24 Si 0.97 41.54 29.54 68.60 2.03 43.56 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 C 0.11 5.23 5.38 86.85 0.47 5.70 16 29 H 0.06 1.28 7.56 -2.39 -0.02 1.27 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.06 0.68 7.88 -2.39 -0.02 0.66 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.42 11.24 7.85 -92.71 -0.73 10.51 16 42 H 0.09 2.92 7.71 -2.39 -0.02 2.90 16 43 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 44 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.09 3.43 8.03 -2.38 -0.02 3.41 16 46 H 0.37 20.25 7.56 -74.06 -0.56 19.69 16 47 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.06 3.18 7.33 -2.39 -0.02 3.16 16 49 H 0.06 2.84 8.03 -2.38 -0.02 2.82 16 Total: -1.00 -63.91 403.26 -1.06 -64.97 By element: Atomic # 1 Polarization: 47.26 SS G_CDS: -0.32 Total: 46.94 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 5.38 Total: 27.77 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.72 Total: -97.69 kcal Atomic # 8 Polarization: -82.11 SS G_CDS: -3.43 Total: -85.54 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -63.91 -1.06 -64.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327036708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.755 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds