Wall clock time and date at job start Tue Mar 31 2020 23:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47366 * 119.99541 * 2 1 3 5 5 O 1.42906 * 109.46896 * 55.00055 * 4 2 1 6 6 C 1.42898 * 114.00078 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46858 * 179.97438 * 6 5 4 8 8 C 1.53000 * 117.49720 * 243.61841 * 7 6 5 9 9 C 1.52993 * 60.00163 * 252.51545 * 8 7 6 10 10 N 1.46499 * 109.47451 * 239.99985 * 2 1 3 11 11 C 1.34775 * 120.00299 * 84.99613 * 10 2 1 12 12 O 1.21345 * 119.99864 * 0.02562 * 11 10 2 13 13 C 1.49447 * 120.00201 * 180.02562 * 11 10 2 14 14 O 1.21354 * 120.00068 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00201 * 179.97438 * 13 11 10 16 16 C 1.47014 * 125.64849 * 359.96105 * 15 13 11 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47224 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47022 * 120.00381 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00133 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 11 29 29 H 1.09002 * 109.47098 * 300.00598 * 1 2 3 30 30 H 1.09001 * 109.47265 * 59.99713 * 1 2 3 31 31 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47339 * 174.99878 * 4 2 1 33 33 H 1.08999 * 109.47436 * 295.00323 * 4 2 1 34 34 H 1.08998 * 109.47056 * 299.99868 * 6 5 4 35 35 H 1.09001 * 109.47229 * 60.00253 * 6 5 4 36 36 H 1.08992 * 115.55283 * 29.32774 * 7 6 5 37 37 H 1.09000 * 117.50113 * 0.02562 * 8 7 6 38 38 H 1.09001 * 117.49839 * 145.02275 * 8 7 6 39 39 H 1.09003 * 117.49674 * 252.51113 * 9 8 7 40 40 H 1.08997 * 117.50246 * 107.49245 * 9 8 7 41 41 H 0.97005 * 119.99446 * 265.00465 * 10 2 1 42 42 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 43 43 H 1.09006 * 109.88750 * 61.67443 * 16 15 13 44 44 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 45 45 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 46 46 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 47 47 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 49 49 H 1.08996 * 110.36616 * 274.67811 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8836 -2.7924 2.4454 7 6 1.2152 -4.1682 2.4072 8 6 0.2458 -4.5143 3.5392 9 6 1.6215 -5.1810 3.4795 10 7 2.0183 -0.6906 -1.1961 11 6 2.1470 -0.0183 -2.3571 12 8 1.8588 1.1591 -2.4116 13 6 2.6447 -0.7230 -3.5775 14 8 2.9326 -1.9006 -3.5232 15 7 2.7729 -0.0508 -4.7386 16 6 2.4599 1.3707 -4.9448 17 6 2.7334 1.6894 -6.4297 18 6 2.6453 0.2959 -7.1062 19 8 1.2872 -0.0571 -7.3767 20 6 3.4726 0.2522 -8.3651 21 1 3.9819 1.1409 -8.7076 22 6 3.5794 -0.9222 -9.0793 23 7 2.9591 -2.0042 -8.6624 24 14 4.6055 -0.9764 -10.6394 25 1 5.1965 0.3626 -10.8899 26 1 5.6930 -1.9755 -10.4821 27 1 3.7432 -1.3598 -11.7860 28 6 3.2501 -0.6194 -6.0124 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1262 -0.7994 1.2056 33 1 1.7516 -0.1582 2.1370 34 1 2.9666 -2.9136 2.4270 35 1 1.5916 -2.2723 3.3578 36 1 0.9863 -4.5522 1.4131 37 1 0.0839 -3.7618 4.3109 38 1 -0.6212 -5.1261 3.2899 39 1 1.6597 -6.2315 3.1910 40 1 2.3651 -4.8673 4.2122 41 1 2.2490 -1.6318 -1.1525 42 1 1.4113 1.5568 -4.7128 43 1 3.0971 1.9866 -4.3100 44 1 3.7282 2.1169 -6.5556 45 1 1.9714 2.3599 -6.8270 46 1 1.1738 -0.9580 -7.7095 47 1 3.0340 -2.8304 -9.1652 48 1 2.8892 -1.6411 -6.1305 49 1 4.3389 -0.5935 -6.0552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327036709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:43 Heat of formation + Delta-G solvation = -137.574379 kcal Electronic energy + Delta-G solvation = -30086.877847 eV Core-core repulsion = 25822.116821 eV Total energy + Delta-G solvation = -4264.761026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39906 -39.07681 -38.38372 -37.18943 -37.08080 -35.26148 -34.15565 -32.20445 -31.16794 -30.19792 -27.93321 -27.86064 -26.27347 -25.81705 -23.97273 -22.77394 -22.23118 -21.11923 -20.70110 -19.80682 -19.45884 -17.39027 -17.35161 -17.11219 -16.74378 -16.11134 -15.81540 -15.57452 -15.24734 -15.13822 -14.88519 -14.51089 -14.27873 -14.09289 -13.67618 -13.39577 -13.05844 -12.96668 -12.83151 -12.71384 -12.41199 -12.25199 -11.94494 -11.89476 -11.62891 -11.49540 -11.34960 -11.25460 -11.06893 -11.04230 -10.79097 -10.76490 -10.63589 -10.55169 -10.44702 -10.18792 -9.86127 -9.39371 -9.20916 -9.09115 -8.69177 -8.38610 -7.87649 -6.29413 -4.38357 1.84226 2.67167 3.08800 3.19770 3.28661 3.32248 3.48634 3.65304 3.93634 4.26448 4.35386 4.49371 4.51781 4.66338 4.76577 4.79350 4.90666 4.96744 4.98567 5.09869 5.19974 5.23383 5.25947 5.35680 5.49465 5.51410 5.57898 5.70641 5.80739 5.81772 5.83952 5.86550 6.08332 6.16939 6.28634 6.40286 6.52720 6.74291 6.80980 6.82773 6.86090 7.17912 7.29598 7.35463 7.73335 7.92374 8.02025 8.09367 8.48810 8.65775 9.30392 9.40683 10.78219 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.002217 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.646333 B =12626.061097 C =13630.831270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.103 0.897 4 C 0.054 3.946 5 O -0.379 6.379 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.178 4.178 9 C -0.175 4.175 10 N -0.700 5.700 11 C 0.511 3.489 12 O -0.519 6.519 13 C 0.507 3.493 14 O -0.537 6.537 15 N -0.575 5.575 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.535 4.535 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.090 3.910 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.416 0.584 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.383 0.617 47 H 0.270 0.730 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -0.363 23.193 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.121 0.879 4 C -0.023 4.023 5 O -0.298 6.298 6 C 0.018 3.982 7 C -0.172 4.172 8 C -0.215 4.215 9 C -0.212 4.212 10 N -0.354 5.354 11 C 0.293 3.707 12 O -0.394 6.394 13 C 0.289 3.711 14 O -0.416 6.416 15 N -0.307 5.307 16 C -0.010 4.010 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.390 6.390 20 C -0.573 4.573 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.030 4.030 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.233 0.767 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.586 0.197 23.269 23.413 hybrid contribution 0.937 -1.114 -0.711 1.620 sum -1.649 -0.916 22.558 22.637 Atomic orbital electron populations 1.22085 0.94193 1.03233 1.02350 1.21090 0.95526 0.96650 0.82510 0.87948 1.22818 0.97659 0.84283 0.97545 1.87910 1.70246 1.26170 1.45494 1.21995 0.97747 0.90134 0.88355 1.22153 1.03682 0.95027 0.96312 1.23067 0.93760 1.03685 1.00958 1.22974 0.98511 0.98224 1.01448 1.45788 1.65939 1.15208 1.08500 1.20420 0.78577 0.86990 0.84735 1.90715 1.48533 1.15495 1.84706 1.19590 0.81046 0.86704 0.83745 1.90728 1.51147 1.15177 1.84574 1.48649 1.60356 1.12236 1.09426 1.22133 1.00910 0.80546 0.97452 1.22717 1.01804 0.99052 0.92417 1.19642 0.80987 0.87869 0.90728 1.86116 1.27592 1.37438 1.87871 1.21514 1.30687 0.96921 1.08218 0.91323 1.25089 0.95014 0.95245 0.97946 1.69661 1.42837 1.01155 1.39660 0.86331 0.79798 0.78258 0.82403 1.19555 1.20794 1.20746 1.23506 0.98844 1.00875 0.79818 0.91765 0.91880 0.91225 0.92331 0.91576 0.92778 0.93209 0.86574 0.88760 0.88570 0.88314 0.88723 0.74760 0.91180 0.91780 0.90398 0.90519 0.76688 0.91994 0.89338 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.29 37.15 0.35 -1.35 16 2 C 0.15 1.56 2.98 -67.94 -0.20 1.36 16 3 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.45 5.68 37.16 0.21 0.66 16 5 O -0.38 -3.64 9.19 -35.23 -0.32 -3.97 16 6 C 0.09 0.72 6.22 37.16 0.23 0.95 16 7 C -0.15 -1.20 6.06 -90.62 -0.55 -1.74 16 8 C -0.18 -1.16 10.18 -26.73 -0.27 -1.44 16 9 C -0.17 -1.09 10.25 -26.73 -0.27 -1.36 16 10 N -0.70 -9.58 5.05 -54.24 -0.27 -9.85 16 11 C 0.51 8.79 7.82 -11.59 -0.09 8.70 16 12 O -0.52 -9.39 13.79 5.50 0.08 -9.31 16 13 C 0.51 10.39 7.91 -11.59 -0.09 10.30 16 14 O -0.54 -12.02 16.73 5.49 0.09 -11.93 16 15 N -0.57 -12.34 3.33 -171.02 -0.57 -12.91 16 16 C 0.11 2.19 5.49 -3.07 -0.02 2.18 16 17 C -0.12 -2.51 6.13 -24.90 -0.15 -2.66 16 18 C 0.25 6.05 0.87 -89.62 -0.08 5.98 16 19 O -0.58 -15.00 13.15 -35.23 -0.46 -15.46 16 20 C -0.54 -13.86 8.26 -34.44 -0.28 -14.15 16 21 H 0.07 1.74 7.78 -52.48 -0.41 1.34 16 22 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 23 N -0.89 -23.68 10.72 55.43 0.59 -23.08 16 24 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.09 2.17 5.50 -2.52 -0.01 2.15 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.42 5.67 7.85 -40.82 -0.32 5.35 16 42 H 0.07 1.39 7.58 -51.93 -0.39 0.99 16 43 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 44 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.38 10.09 7.32 45.56 0.33 10.42 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.09 2.35 7.47 -51.93 -0.39 1.96 16 49 H 0.07 1.63 8.03 -51.93 -0.42 1.22 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -29.51 403.28 -8.53 -38.04 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -7.38 Total: 15.87 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -1.33 Total: 11.28 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.25 Total: -45.84 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.62 Total: -40.67 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.51 -8.53 -38.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327036709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.536 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds