Wall clock time and date at job start Tue Mar 31 2020 23:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47366 * 119.99541 * 2 1 3 5 5 O 1.42906 * 109.46896 * 55.00055 * 4 2 1 6 6 C 1.42898 * 114.00078 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46858 * 179.97438 * 6 5 4 8 8 C 1.53000 * 117.49720 * 243.61841 * 7 6 5 9 9 C 1.52993 * 60.00163 * 252.51545 * 8 7 6 10 10 N 1.46499 * 109.47451 * 239.99985 * 2 1 3 11 11 C 1.34775 * 120.00299 * 84.99613 * 10 2 1 12 12 O 1.21345 * 119.99864 * 0.02562 * 11 10 2 13 13 C 1.49447 * 120.00201 * 180.02562 * 11 10 2 14 14 O 1.21354 * 120.00068 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00201 * 179.97438 * 13 11 10 16 16 C 1.47014 * 125.64849 * 359.96105 * 15 13 11 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47224 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47022 * 120.00381 * 24 22 20 27 27 H 1.48501 * 109.47272 * 240.00133 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 11 29 29 H 1.09002 * 109.47098 * 300.00598 * 1 2 3 30 30 H 1.09001 * 109.47265 * 59.99713 * 1 2 3 31 31 H 1.08995 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47339 * 174.99878 * 4 2 1 33 33 H 1.08999 * 109.47436 * 295.00323 * 4 2 1 34 34 H 1.08998 * 109.47056 * 299.99868 * 6 5 4 35 35 H 1.09001 * 109.47229 * 60.00253 * 6 5 4 36 36 H 1.08992 * 115.55283 * 29.32774 * 7 6 5 37 37 H 1.09000 * 117.50113 * 0.02562 * 8 7 6 38 38 H 1.09001 * 117.49839 * 145.02275 * 8 7 6 39 39 H 1.09003 * 117.49674 * 252.51113 * 9 8 7 40 40 H 1.08997 * 117.50246 * 107.49245 * 9 8 7 41 41 H 0.97005 * 119.99446 * 265.00465 * 10 2 1 42 42 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 43 43 H 1.09006 * 109.88750 * 61.67443 * 16 15 13 44 44 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 45 45 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 46 46 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 47 47 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 49 49 H 1.08996 * 110.36616 * 274.67811 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8836 -2.7924 2.4454 7 6 1.2152 -4.1682 2.4072 8 6 0.2458 -4.5143 3.5392 9 6 1.6215 -5.1810 3.4795 10 7 2.0183 -0.6906 -1.1961 11 6 2.1470 -0.0183 -2.3571 12 8 1.8588 1.1591 -2.4116 13 6 2.6447 -0.7230 -3.5775 14 8 2.9326 -1.9006 -3.5232 15 7 2.7729 -0.0508 -4.7386 16 6 2.4599 1.3707 -4.9448 17 6 2.7334 1.6894 -6.4297 18 6 2.6453 0.2959 -7.1062 19 8 1.2872 -0.0571 -7.3767 20 6 3.4726 0.2522 -8.3651 21 1 3.9819 1.1409 -8.7076 22 6 3.5794 -0.9222 -9.0793 23 7 2.9591 -2.0042 -8.6624 24 14 4.6055 -0.9764 -10.6394 25 1 5.1965 0.3626 -10.8899 26 1 5.6930 -1.9755 -10.4821 27 1 3.7432 -1.3598 -11.7860 28 6 3.2501 -0.6194 -6.0124 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1262 -0.7994 1.2056 33 1 1.7516 -0.1582 2.1370 34 1 2.9666 -2.9136 2.4270 35 1 1.5916 -2.2723 3.3578 36 1 0.9863 -4.5522 1.4131 37 1 0.0839 -3.7618 4.3109 38 1 -0.6212 -5.1261 3.2899 39 1 1.6597 -6.2315 3.1910 40 1 2.3651 -4.8673 4.2122 41 1 2.2490 -1.6318 -1.1525 42 1 1.4113 1.5568 -4.7128 43 1 3.0971 1.9866 -4.3100 44 1 3.7282 2.1169 -6.5556 45 1 1.9714 2.3599 -6.8270 46 1 1.1738 -0.9580 -7.7095 47 1 3.0340 -2.8304 -9.1652 48 1 2.8892 -1.6411 -6.1305 49 1 4.3389 -0.5935 -6.0552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327036709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:42 Heat of formation + Delta-G solvation = -158.738250 kcal Electronic energy + Delta-G solvation = -30087.795582 eV Core-core repulsion = 25822.116821 eV Total energy + Delta-G solvation = -4265.678760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85466 -40.26969 -39.41290 -38.87607 -37.83394 -36.44985 -35.80354 -34.21344 -32.20132 -31.95607 -29.72197 -28.52369 -27.72282 -26.87903 -25.56574 -23.72158 -23.25266 -21.90408 -21.56349 -21.54249 -20.96109 -19.17416 -18.77426 -18.25696 -17.74570 -17.24751 -17.22548 -17.06981 -16.45601 -16.27203 -16.20397 -15.78814 -15.70492 -15.18847 -14.90016 -14.69866 -14.66026 -14.41350 -14.08362 -13.96265 -13.51222 -13.37365 -13.34107 -13.31381 -12.87056 -12.75783 -12.58481 -12.53366 -12.38907 -12.35193 -12.19776 -12.10987 -12.07605 -11.95545 -11.32571 -11.25066 -11.19611 -10.75337 -10.57868 -10.43460 -10.35103 -10.31601 -9.64723 -8.25968 -6.42347 0.34232 1.27110 1.42667 1.45799 1.56585 2.11968 2.36803 2.45194 2.57057 2.95453 3.00163 3.31880 3.69693 3.77677 3.91467 3.98584 4.01466 4.06415 4.12833 4.15156 4.32644 4.35734 4.36363 4.44589 4.50274 4.62290 4.65212 4.70683 4.74296 4.77694 4.78245 4.92320 4.95752 5.01581 5.05279 5.14228 5.23289 5.23935 5.25278 5.32807 5.36336 5.42688 5.74565 5.98618 6.06780 6.23287 6.36922 6.61853 6.68073 6.92751 7.27795 7.35480 8.80379 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.002217 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.646333 B =12626.061097 C =13630.831270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.109 0.891 4 C 0.058 3.942 5 O -0.401 6.401 6 C 0.094 3.906 7 C -0.173 4.173 8 C -0.176 4.176 9 C -0.167 4.167 10 N -0.684 5.684 11 C 0.519 3.481 12 O -0.528 6.528 13 C 0.499 3.501 14 O -0.563 6.563 15 N -0.583 5.583 16 C 0.120 3.880 17 C -0.115 4.115 18 C 0.232 3.768 19 O -0.589 6.589 20 C -0.553 4.553 21 H 0.071 0.929 22 C 0.026 3.974 23 N -0.916 5.916 24 Si 0.967 3.033 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.104 3.896 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.416 0.584 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.375 0.625 47 H 0.270 0.730 48 H 0.054 0.946 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 0.837 25.083 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.127 0.873 4 C -0.019 4.019 5 O -0.321 6.321 6 C 0.018 3.982 7 C -0.192 4.192 8 C -0.213 4.213 9 C -0.204 4.204 10 N -0.337 5.337 11 C 0.299 3.701 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.443 6.443 15 N -0.314 5.314 16 C -0.002 4.002 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.397 6.397 20 C -0.591 4.591 21 H 0.089 0.911 22 C -0.175 4.175 23 N -0.556 5.556 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.018 4.018 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.123 1.413 25.205 25.334 hybrid contribution 0.751 -1.550 -1.233 2.118 sum -1.372 -0.136 23.972 24.011 Atomic orbital electron populations 1.22031 0.93992 1.02652 1.02605 1.21409 0.95636 0.97093 0.82013 0.87313 1.22839 0.97912 0.84037 0.97069 1.87884 1.70708 1.26869 1.46630 1.22088 0.97988 0.89808 0.88333 1.22161 1.05271 0.95859 0.95872 1.23142 0.93828 1.03855 1.00437 1.23056 0.98648 0.98001 1.00720 1.45855 1.64382 1.15173 1.08336 1.19740 0.79107 0.86718 0.84515 1.90708 1.49485 1.15540 1.84724 1.20324 0.80233 0.86594 0.84562 1.90703 1.52023 1.16425 1.85178 1.48699 1.60647 1.13040 1.09053 1.22161 1.01297 0.79594 0.97140 1.22731 1.03088 0.96981 0.92507 1.19888 0.80112 0.90063 0.90746 1.86109 1.28784 1.36909 1.87879 1.21803 1.31082 0.97160 1.09066 0.91059 1.25836 0.96006 0.94954 1.00703 1.69770 1.43692 1.01504 1.40606 0.85369 0.78219 0.78374 0.78827 1.18772 1.20720 1.20692 1.23092 0.98067 0.99169 0.81501 0.89042 0.94052 0.92184 0.91631 0.88597 0.92303 0.91499 0.88613 0.87676 0.88659 0.88170 0.87430 0.74712 0.91335 0.89509 0.88801 0.89659 0.77525 0.92020 0.92706 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.29 71.98 0.67 -2.35 16 2 C 0.14 2.73 2.98 44.99 0.13 2.86 16 3 H 0.11 2.04 7.58 -2.38 -0.02 2.02 16 4 C 0.06 0.80 5.68 71.98 0.41 1.21 16 5 O -0.40 -7.03 9.19 -148.98 -1.37 -8.40 16 6 C 0.09 1.26 6.22 71.98 0.45 1.71 16 7 C -0.17 -2.56 6.06 -10.79 -0.07 -2.63 16 8 C -0.18 -2.06 10.18 30.59 0.31 -1.75 16 9 C -0.17 -1.86 10.25 30.59 0.31 -1.54 16 10 N -0.68 -18.09 5.05 -443.89 -2.24 -20.34 16 11 C 0.52 17.49 7.82 87.27 0.68 18.18 16 12 O -0.53 -18.39 13.79 -3.23 -0.04 -18.44 16 13 C 0.50 20.65 7.91 87.27 0.69 21.34 16 14 O -0.56 -25.80 16.73 -3.26 -0.05 -25.85 16 15 N -0.58 -25.18 3.33 -813.36 -2.71 -27.89 16 16 C 0.12 4.56 5.49 86.73 0.48 5.04 16 17 C -0.12 -4.62 6.13 31.78 0.19 -4.43 16 18 C 0.23 11.42 0.87 -10.14 -0.01 11.41 16 19 O -0.59 -30.99 13.15 -148.98 -1.96 -32.95 16 20 C -0.55 -28.72 8.26 25.60 0.21 -28.51 16 21 H 0.07 3.58 7.78 -2.91 -0.02 3.56 16 22 C 0.03 1.34 5.30 84.65 0.45 1.79 16 23 N -0.92 -49.60 10.72 21.44 0.23 -49.37 16 24 Si 0.97 41.57 29.54 68.60 2.03 43.59 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.10 5.11 5.50 86.86 0.48 5.58 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.29 7.56 -2.39 -0.02 1.27 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.42 11.16 7.85 -92.70 -0.73 10.43 16 42 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 43 H 0.09 2.92 7.69 -2.38 -0.02 2.91 16 44 H 0.09 3.44 8.03 -2.38 -0.02 3.42 16 45 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 46 H 0.38 20.53 7.32 -74.06 -0.54 19.99 16 47 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 48 H 0.05 3.04 7.47 -2.39 -0.02 3.02 16 49 H 0.06 2.92 8.03 -2.39 -0.02 2.90 16 Total: -1.00 -63.99 403.28 -1.03 -65.02 By element: Atomic # 1 Polarization: 47.01 SS G_CDS: -0.30 Total: 46.70 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.39 Total: 27.92 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.72 Total: -97.60 kcal Atomic # 8 Polarization: -82.21 SS G_CDS: -3.43 Total: -85.64 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -63.99 -1.03 -65.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327036709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.719 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds