Wall clock time and date at job start Tue Mar 31 2020 23:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 O 1.45197 * 109.47691 * 239.99707 * 2 1 3 5 5 C 1.34232 * 117.00030 * 89.99782 * 4 2 1 6 6 O 1.20831 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47106 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47341 * 179.97438 * 8 7 5 10 10 C 1.50692 * 109.47456 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00156 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99911 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00223 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47330 * 90.00015 * 14 12 10 16 16 H 1.48506 * 109.47317 * 209.99755 * 14 12 10 17 17 H 1.48495 * 109.47317 * 329.99919 * 14 12 10 18 18 C 1.50707 * 109.47178 * 119.99933 * 2 1 3 19 19 O 1.21277 * 120.00117 * 112.23721 * 18 2 1 20 20 N 1.34782 * 119.99752 * 292.24178 * 18 2 1 21 21 C 1.46922 * 120.63119 * 355.24494 * 20 18 2 22 22 C 1.53196 * 108.77648 * 233.58657 * 21 20 18 23 23 C 1.53039 * 109.30928 * 305.36370 * 22 21 20 24 24 C 1.50696 * 109.45716 * 181.38344 * 23 22 21 25 25 N 1.34780 * 120.00175 * 59.93242 * 24 23 22 26 26 O 1.21279 * 120.00356 * 239.93139 * 24 23 22 27 27 C 1.53048 * 109.53875 * 61.36690 * 23 22 21 28 28 C 1.46923 * 120.63056 * 175.22044 * 20 18 2 29 29 H 1.09003 * 109.46951 * 66.41617 * 1 2 3 30 30 H 1.08997 * 109.47546 * 186.41283 * 1 2 3 31 31 H 1.09000 * 109.47791 * 306.41551 * 1 2 3 32 32 H 1.08997 * 109.46883 * 300.00305 * 7 5 4 33 33 H 1.09001 * 109.46604 * 60.00136 * 7 5 4 34 34 H 1.08997 * 109.47589 * 299.99983 * 8 7 5 35 35 H 1.09010 * 109.47194 * 60.00316 * 8 7 5 36 36 H 1.09005 * 109.47018 * 300.00262 * 9 8 7 37 37 H 1.09005 * 109.47059 * 59.99895 * 9 8 7 38 38 H 0.97004 * 120.00405 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.59059 * 353.37550 * 21 20 18 40 40 H 1.08999 * 109.58694 * 113.79773 * 21 20 18 41 41 H 1.08998 * 109.49286 * 65.31612 * 22 21 20 42 42 H 1.09002 * 109.49982 * 185.41395 * 22 21 20 43 43 H 1.09000 * 109.46047 * 301.34265 * 23 22 21 44 44 H 0.96995 * 119.99836 * 0.02562 * 25 24 23 45 45 H 0.97003 * 119.99978 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.49582 * 178.67869 * 27 23 22 47 47 H 1.09000 * 109.52223 * 58.59716 * 27 23 22 48 48 H 1.09001 * 109.58561 * 246.20391 * 28 20 18 49 49 H 1.09007 * 109.58556 * 6.48351 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2518 -2.2503 7 6 2.7184 -0.5773 -3.5494 8 6 2.8625 0.4887 -4.6373 9 6 3.3720 -0.1621 -5.9249 10 6 3.5145 0.8879 -6.9963 11 1 3.2661 1.9166 -6.7807 12 6 3.9610 0.5352 -8.2521 13 7 4.2630 -0.7175 -8.5149 14 14 4.1370 1.8367 -9.5805 15 1 5.5037 2.4152 -9.5288 16 1 3.9111 1.2189 -10.9119 17 1 3.1362 2.9107 -9.3569 18 6 2.0323 -0.7104 1.2305 19 8 2.6092 -1.7720 1.1248 20 7 1.8403 -0.1660 2.4485 21 6 1.2367 1.1663 2.5862 22 6 2.1614 2.0409 3.4389 23 6 2.4397 1.3364 4.7687 24 6 3.3216 2.2091 5.6241 25 7 2.9052 3.4386 5.9864 26 8 4.4062 1.8050 5.9865 27 6 3.1439 0.0035 4.5043 28 6 2.2303 -0.8940 3.6637 29 1 -0.3633 0.4112 -0.9419 30 1 -0.3634 -1.0212 0.1148 31 1 -0.3635 0.6100 0.8270 32 1 3.6873 -1.0409 -3.3638 33 1 2.0089 -1.3370 -3.8773 34 1 1.8935 0.9519 -4.8228 35 1 3.5718 1.2488 -4.3096 36 1 4.3412 -0.6251 -5.7391 37 1 2.6631 -0.9225 -6.2528 38 1 4.5775 -0.9656 -9.3983 39 1 1.1148 1.6160 1.6007 40 1 0.2653 1.0789 3.0728 41 1 3.1001 2.2021 2.9090 42 1 1.6810 3.0006 3.6292 43 1 1.4983 1.1533 5.2867 44 1 2.0376 3.7617 5.6969 45 1 3.4727 4.0002 6.5373 46 1 3.3628 -0.4867 5.4529 47 1 4.0737 0.1835 3.9647 48 1 1.3399 -1.1495 4.2381 49 1 2.7619 -1.8051 3.3891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327195875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:07 Heat of formation + Delta-G solvation = -181.354788 kcal Electronic energy + Delta-G solvation = -29532.028701 eV Core-core repulsion = 25265.369214 eV Total energy + Delta-G solvation = -4266.659487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21577 -40.45117 -39.63739 -37.50383 -36.48303 -34.37873 -34.31502 -33.72454 -32.35443 -32.01032 -31.11417 -28.13790 -26.99951 -25.09418 -24.14907 -23.67910 -22.34031 -21.21649 -20.53246 -19.84336 -19.61175 -18.26810 -17.73827 -17.35994 -17.12332 -16.62322 -16.31289 -16.19378 -15.68116 -15.50904 -15.31192 -14.66211 -14.54948 -14.47000 -14.33425 -14.13074 -13.72496 -13.55736 -13.32701 -12.90729 -12.78323 -12.56891 -12.32511 -12.29317 -11.91764 -11.87865 -11.83732 -11.43396 -11.37197 -11.28085 -10.87905 -10.83216 -10.69566 -10.57976 -10.39720 -10.29511 -10.23020 -9.92628 -9.73616 -9.40000 -9.16311 -9.08974 -8.33665 -5.98847 -4.00945 2.07365 2.11113 2.22712 2.42264 2.92445 3.00849 3.33979 3.39980 3.43944 3.88427 4.01753 4.09094 4.18629 4.44806 4.47685 4.51763 4.59862 4.66400 4.69068 4.81328 4.86714 4.92248 5.04745 5.11739 5.27356 5.29869 5.33809 5.37100 5.44520 5.48585 5.62566 5.66327 5.72254 5.77676 6.00033 6.09697 6.22716 6.46972 6.61543 6.75917 6.81243 6.84855 7.06867 7.67578 7.72656 7.75470 7.79335 7.93994 8.00754 8.43132 9.05724 9.63017 11.12517 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.001809 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.652310 B =15475.651971 C =16064.177745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.333 6.333 5 C 0.462 3.538 6 O -0.508 6.508 7 C -0.111 4.111 8 C -0.099 4.099 9 C 0.020 3.980 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.522 3.478 19 O -0.510 6.510 20 N -0.613 5.613 21 C 0.102 3.898 22 C -0.129 4.129 23 C -0.108 4.108 24 C 0.521 3.479 25 N -0.856 5.856 26 O -0.539 6.539 27 C -0.116 4.116 28 C 0.113 3.887 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.401 0.599 45 H 0.402 0.598 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.008 5.463 32.308 34.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 H 0.125 0.875 4 O -0.249 6.249 5 C 0.306 3.694 6 O -0.395 6.395 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.017 4.017 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.309 3.691 19 O -0.383 6.383 20 N -0.349 5.349 21 C -0.021 4.021 22 C -0.168 4.168 23 C -0.130 4.130 24 C 0.305 3.695 25 N -0.420 5.420 26 O -0.414 6.414 27 C -0.154 4.154 28 C -0.009 4.009 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.230 0.770 45 H 0.232 0.768 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.034 4.674 32.257 34.103 hybrid contribution -0.156 1.380 -0.529 1.486 sum -10.190 6.053 31.728 33.870 Atomic orbital electron populations 1.22208 0.91834 1.03999 1.04294 1.22343 0.96031 0.97583 0.83272 0.87457 1.86718 1.77165 1.41757 1.19308 1.24615 0.73496 0.86193 0.85073 1.90621 1.48174 1.16794 1.83952 1.21728 1.03283 1.01435 0.88396 1.21586 1.01738 0.95967 0.94349 1.19135 0.96453 0.96119 0.89996 1.21221 1.44017 0.94707 0.95854 0.92555 1.25025 0.95517 0.95345 0.98643 1.69964 1.45273 1.16395 1.21836 0.86576 0.78453 0.81740 0.81124 1.20672 1.21241 1.19876 1.20234 0.79172 0.85822 0.83879 1.90751 1.39867 1.22076 1.85642 1.47993 1.62922 1.18444 1.05583 1.21921 0.96192 0.82273 1.01687 1.21971 1.01579 0.98540 0.94694 1.21352 0.99709 0.95955 0.95937 1.20635 0.86973 0.82062 0.79782 1.43910 1.23578 1.17879 1.56636 1.90776 1.22334 1.73066 1.55267 1.21766 0.98974 0.93520 1.01177 1.21662 0.98821 0.96067 0.84337 0.90237 0.90834 0.90205 0.87832 0.87854 0.92400 0.92432 0.96292 0.96283 0.92994 0.88781 0.90290 0.90330 0.89777 0.87952 0.77026 0.76755 0.89593 0.90400 0.91027 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.22 37.15 0.34 -1.09 16 2 C 0.07 0.78 2.13 -27.88 -0.06 0.72 16 3 H 0.11 1.19 6.07 -51.93 -0.32 0.87 16 4 O -0.33 -5.10 9.43 -45.87 -0.43 -5.53 16 5 C 0.46 7.63 7.93 36.01 0.29 7.92 16 6 O -0.51 -9.16 15.20 -18.75 -0.29 -9.44 16 7 C -0.11 -1.89 5.81 -27.89 -0.16 -2.05 16 8 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.52 -14.84 9.11 -34.45 -0.31 -15.16 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.52 6.21 7.06 -10.98 -0.08 6.13 16 19 O -0.51 -8.20 15.94 -13.97 -0.22 -8.43 16 20 N -0.61 -4.81 2.97 -172.76 -0.51 -5.33 16 21 C 0.10 0.44 5.11 -3.71 -0.02 0.42 16 22 C -0.13 -0.48 5.27 -26.61 -0.14 -0.62 16 23 C -0.11 -0.48 2.49 -91.73 -0.23 -0.71 16 24 C 0.52 3.44 7.43 -10.99 -0.08 3.36 16 25 N -0.86 -2.47 8.76 31.22 0.27 -2.20 16 26 O -0.54 -6.24 16.82 5.56 0.09 -6.14 16 27 C -0.12 -0.78 4.65 -26.61 -0.12 -0.90 16 28 C 0.11 0.78 6.44 -3.71 -0.02 0.76 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.43 6.12 -51.93 -0.32 0.11 16 32 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 0.41 4.95 -51.92 -0.26 0.15 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.09 7.52 -51.93 -0.39 -0.30 16 43 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.40 -0.08 8.23 -40.82 -0.34 -0.41 16 45 H 0.40 1.04 8.93 -40.82 -0.36 0.67 16 46 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 47 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.10 0.91 7.00 -51.93 -0.36 0.54 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -38.34 399.45 -8.10 -46.44 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.80 Total: -4.48 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.96 Total: -1.54 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.50 Total: -33.73 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.85 Total: -29.55 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.34 -8.10 -46.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327195875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.916 kcal (2) G-P(sol) polarization free energy of solvation -38.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds