Wall clock time and date at job start Tue Mar 31 2020 23:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 O 1.45197 * 109.47691 * 239.99707 * 2 1 3 5 5 C 1.34232 * 117.00030 * 89.99782 * 4 2 1 6 6 O 1.20831 * 119.99611 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.52993 * 109.47106 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47341 * 179.97438 * 8 7 5 10 10 C 1.50692 * 109.47456 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00156 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99911 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00223 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47330 * 90.00015 * 14 12 10 16 16 H 1.48506 * 109.47317 * 209.99755 * 14 12 10 17 17 H 1.48495 * 109.47317 * 329.99919 * 14 12 10 18 18 C 1.50707 * 109.47178 * 119.99933 * 2 1 3 19 19 O 1.21277 * 120.00117 * 112.23721 * 18 2 1 20 20 N 1.34782 * 119.99752 * 292.24178 * 18 2 1 21 21 C 1.46922 * 120.63119 * 355.24494 * 20 18 2 22 22 C 1.53196 * 108.77648 * 233.58657 * 21 20 18 23 23 C 1.53039 * 109.30928 * 305.36370 * 22 21 20 24 24 C 1.50696 * 109.45716 * 181.38344 * 23 22 21 25 25 N 1.34780 * 120.00175 * 59.93242 * 24 23 22 26 26 O 1.21279 * 120.00356 * 239.93139 * 24 23 22 27 27 C 1.53048 * 109.53875 * 61.36690 * 23 22 21 28 28 C 1.46923 * 120.63056 * 175.22044 * 20 18 2 29 29 H 1.09003 * 109.46951 * 66.41617 * 1 2 3 30 30 H 1.08997 * 109.47546 * 186.41283 * 1 2 3 31 31 H 1.09000 * 109.47791 * 306.41551 * 1 2 3 32 32 H 1.08997 * 109.46883 * 300.00305 * 7 5 4 33 33 H 1.09001 * 109.46604 * 60.00136 * 7 5 4 34 34 H 1.08997 * 109.47589 * 299.99983 * 8 7 5 35 35 H 1.09010 * 109.47194 * 60.00316 * 8 7 5 36 36 H 1.09005 * 109.47018 * 300.00262 * 9 8 7 37 37 H 1.09005 * 109.47059 * 59.99895 * 9 8 7 38 38 H 0.97004 * 120.00405 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.59059 * 353.37550 * 21 20 18 40 40 H 1.08999 * 109.58694 * 113.79773 * 21 20 18 41 41 H 1.08998 * 109.49286 * 65.31612 * 22 21 20 42 42 H 1.09002 * 109.49982 * 185.41395 * 22 21 20 43 43 H 1.09000 * 109.46047 * 301.34265 * 23 22 21 44 44 H 0.96995 * 119.99836 * 0.02562 * 25 24 23 45 45 H 0.97003 * 119.99978 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.49582 * 178.67869 * 27 23 22 47 47 H 1.09000 * 109.52223 * 58.59716 * 27 23 22 48 48 H 1.09001 * 109.58561 * 246.20391 * 28 20 18 49 49 H 1.09007 * 109.58556 * 6.48351 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9981 1.2518 -2.2503 7 6 2.7184 -0.5773 -3.5494 8 6 2.8625 0.4887 -4.6373 9 6 3.3720 -0.1621 -5.9249 10 6 3.5145 0.8879 -6.9963 11 1 3.2661 1.9166 -6.7807 12 6 3.9610 0.5352 -8.2521 13 7 4.2630 -0.7175 -8.5149 14 14 4.1370 1.8367 -9.5805 15 1 5.5037 2.4152 -9.5288 16 1 3.9111 1.2189 -10.9119 17 1 3.1362 2.9107 -9.3569 18 6 2.0323 -0.7104 1.2305 19 8 2.6092 -1.7720 1.1248 20 7 1.8403 -0.1660 2.4485 21 6 1.2367 1.1663 2.5862 22 6 2.1614 2.0409 3.4389 23 6 2.4397 1.3364 4.7687 24 6 3.3216 2.2091 5.6241 25 7 2.9052 3.4386 5.9864 26 8 4.4062 1.8050 5.9865 27 6 3.1439 0.0035 4.5043 28 6 2.2303 -0.8940 3.6637 29 1 -0.3633 0.4112 -0.9419 30 1 -0.3634 -1.0212 0.1148 31 1 -0.3635 0.6100 0.8270 32 1 3.6873 -1.0409 -3.3638 33 1 2.0089 -1.3370 -3.8773 34 1 1.8935 0.9519 -4.8228 35 1 3.5718 1.2488 -4.3096 36 1 4.3412 -0.6251 -5.7391 37 1 2.6631 -0.9225 -6.2528 38 1 4.5775 -0.9656 -9.3983 39 1 1.1148 1.6160 1.6007 40 1 0.2653 1.0789 3.0728 41 1 3.1001 2.2021 2.9090 42 1 1.6810 3.0006 3.6292 43 1 1.4983 1.1533 5.2867 44 1 2.0376 3.7617 5.6969 45 1 3.4727 4.0002 6.5373 46 1 3.3628 -0.4867 5.4529 47 1 4.0737 0.1835 3.9647 48 1 1.3399 -1.1495 4.2381 49 1 2.7619 -1.8051 3.3891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327195875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:06 Heat of formation + Delta-G solvation = -208.695446 kcal Electronic energy + Delta-G solvation = -29533.214281 eV Core-core repulsion = 25265.369214 eV Total energy + Delta-G solvation = -4267.845067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11188 -41.32002 -40.44944 -38.27893 -37.66366 -36.17360 -34.92146 -34.42459 -34.06488 -32.84449 -31.74434 -29.94560 -27.59328 -26.41640 -25.34400 -24.32531 -23.22485 -22.44387 -21.45603 -21.11541 -20.26350 -19.16133 -18.53953 -18.46904 -18.05300 -17.63325 -17.54286 -17.39213 -16.63852 -16.43849 -16.23154 -16.00993 -15.62382 -15.19232 -15.15073 -14.91723 -14.72144 -14.35878 -14.23723 -14.02701 -13.83066 -13.76660 -13.46768 -13.34741 -13.12205 -12.95195 -12.72308 -12.65180 -12.53577 -12.44087 -12.32370 -11.99306 -11.81341 -11.72014 -11.68887 -11.58369 -11.40172 -11.17962 -10.99624 -10.81263 -10.63394 -10.53930 -9.81219 -8.19211 -6.29586 1.06310 1.20940 1.34974 1.41276 1.42356 1.53704 1.62901 2.07241 2.42635 2.59887 3.14127 3.18567 3.58028 3.61132 3.68853 3.77419 3.79115 3.87343 3.99291 4.11543 4.16794 4.27156 4.29555 4.39050 4.49820 4.54465 4.64345 4.68858 4.69507 4.77510 4.78497 4.88926 4.94029 5.03387 5.05527 5.07648 5.14184 5.25445 5.26252 5.44723 5.53411 5.72593 5.86179 5.90611 6.13435 6.25868 6.49005 6.64697 6.86235 6.93860 7.36862 7.39111 8.92412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.001809 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.652310 B =15475.651971 C =16064.177745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.059 3.941 3 H 0.115 0.885 4 O -0.345 6.345 5 C 0.473 3.527 6 O -0.526 6.526 7 C -0.108 4.108 8 C -0.083 4.083 9 C 0.023 3.977 10 C -0.545 4.545 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.930 5.930 14 Si 0.964 3.036 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.518 3.482 19 O -0.566 6.566 20 N -0.602 5.602 21 C 0.092 3.908 22 C -0.125 4.125 23 C -0.100 4.100 24 C 0.516 3.484 25 N -0.836 5.836 26 O -0.600 6.600 27 C -0.112 4.112 28 C 0.115 3.885 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.049 0.951 36 H -0.001 1.001 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.049 0.951 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.420 0.580 45 H 0.405 0.595 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.107 0.893 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 7.686 33.695 37.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 H 0.132 0.868 4 O -0.261 6.261 5 C 0.317 3.683 6 O -0.415 6.415 7 C -0.145 4.145 8 C -0.121 4.121 9 C -0.015 4.015 10 C -0.583 4.583 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.789 3.211 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.189 1.189 18 C 0.305 3.695 19 O -0.445 6.445 20 N -0.336 5.336 21 C -0.029 4.029 22 C -0.163 4.163 23 C -0.121 4.121 24 C 0.302 3.698 25 N -0.399 5.399 26 O -0.480 6.480 27 C -0.150 4.150 28 C -0.007 4.007 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.252 0.748 45 H 0.236 0.764 46 H 0.102 0.898 47 H 0.059 0.941 48 H 0.125 0.875 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.729 6.971 33.691 36.684 hybrid contribution 0.650 0.720 -0.830 1.277 sum -12.079 7.692 32.862 35.846 Atomic orbital electron populations 1.22238 0.89140 1.04712 1.05535 1.22740 0.98122 0.97356 0.81665 0.86757 1.86663 1.77162 1.42236 1.20080 1.24186 0.73130 0.85701 0.85258 1.90606 1.49119 1.17352 1.84383 1.21533 1.04448 1.00467 0.88062 1.21265 1.00931 0.96405 0.93465 1.19035 0.95183 0.95406 0.91828 1.21660 1.44188 0.95362 0.97048 0.92469 1.25953 0.95011 0.97644 1.01194 1.70083 1.45940 1.18411 1.22617 0.85458 0.78773 0.78962 0.77923 1.19893 1.20568 1.18882 1.20376 0.78773 0.85276 0.85061 1.90727 1.42660 1.24551 1.86522 1.48098 1.61481 1.19593 1.04431 1.22340 0.97821 0.80073 1.02619 1.21988 1.00605 1.00138 0.93595 1.21351 1.00347 0.93979 0.96414 1.21027 0.86344 0.82981 0.79490 1.43769 1.24266 1.16557 1.55354 1.90759 1.24954 1.74518 1.57808 1.21661 0.97741 0.95256 1.00387 1.21725 0.99963 0.94914 0.84104 0.91061 0.91044 0.86160 0.87065 0.86270 0.92633 0.93176 0.98214 0.97814 0.92727 0.88452 0.86009 0.93162 0.85878 0.84033 0.74810 0.76411 0.89813 0.94079 0.87488 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.22 71.98 0.66 -1.70 16 2 C 0.06 1.32 2.13 29.85 0.06 1.38 16 3 H 0.11 2.38 6.07 -2.39 -0.01 2.36 16 4 O -0.35 -10.54 9.43 -45.12 -0.43 -10.97 16 5 C 0.47 15.48 7.93 71.24 0.56 16.05 16 6 O -0.53 -18.62 15.20 21.95 0.33 -18.29 16 7 C -0.11 -3.68 5.81 29.85 0.17 -3.50 16 8 C -0.08 -3.51 4.44 30.59 0.14 -3.38 16 9 C 0.02 1.19 4.97 29.85 0.15 1.33 16 10 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 12 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 13 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.52 12.16 7.06 87.66 0.62 12.78 16 19 O -0.57 -19.01 15.94 15.66 0.25 -18.76 16 20 N -0.60 -8.44 2.97 -818.89 -2.43 -10.87 16 21 C 0.09 0.43 5.11 86.36 0.44 0.87 16 22 C -0.12 -0.53 5.27 30.67 0.16 -0.36 16 23 C -0.10 -0.63 2.49 -11.51 -0.03 -0.66 16 24 C 0.52 6.06 7.43 87.66 0.65 6.71 16 25 N -0.84 -2.62 8.76 -173.53 -1.52 -4.14 16 26 O -0.60 -14.23 16.82 -3.03 -0.05 -14.28 16 27 C -0.11 -1.48 4.65 30.67 0.14 -1.34 16 28 C 0.11 1.48 6.44 86.36 0.56 2.03 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.12 0.76 6.12 -2.39 -0.01 0.74 16 32 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 33 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.05 2.36 8.10 -2.39 -0.02 2.34 16 35 H 0.05 2.17 8.10 -2.38 -0.02 2.15 16 36 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 37 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.10 0.46 4.95 -2.38 -0.01 0.45 16 40 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.12 -0.39 7.52 -2.39 -0.02 -0.41 16 43 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.42 -1.90 8.23 -92.71 -0.76 -2.66 16 45 H 0.40 1.29 8.93 -92.71 -0.83 0.46 16 46 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 47 H 0.04 0.84 8.13 -2.39 -0.02 0.82 16 48 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 1.37 7.00 -2.38 -0.02 1.35 16 Total: -1.00 -88.33 399.45 2.84 -85.49 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -0.61 Total: 1.99 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.99 Total: -0.56 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -3.67 Total: -71.42 kcal Atomic # 8 Polarization: -62.40 SS G_CDS: 0.11 Total: -62.30 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -88.33 2.84 -85.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327195875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.203 kcal (2) G-P(sol) polarization free energy of solvation -88.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds