Wall clock time and date at job start Tue Mar 31 2020 23:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47252 * 2 1 4 4 N 1.46500 * 109.46961 * 119.99594 * 2 1 3 5 5 C 1.34773 * 120.00432 * 275.00011 * 4 2 1 6 6 O 1.21353 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.49454 * 120.00135 * 179.72278 * 5 4 2 8 8 O 1.21343 * 119.99752 * 0.28157 * 7 5 4 9 9 N 1.34777 * 120.00164 * 180.27489 * 7 5 4 10 10 C 1.47023 * 125.64334 * 359.69791 * 9 7 5 11 11 C 1.54340 * 107.26223 * 178.84743 * 10 9 7 12 12 C 1.55157 * 103.02142 * 338.13590 * 11 10 9 13 13 O 1.42893 * 111.00913 * 277.23696 * 12 11 10 14 14 C 1.50703 * 111.03575 * 153.39277 * 12 11 10 15 15 H 1.07998 * 119.99840 * 6.33975 * 14 12 11 16 16 C 1.37873 * 119.99644 * 186.33569 * 14 12 11 17 17 N 1.31513 * 120.00548 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99804 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47279 * 89.99886 * 18 16 14 20 20 H 1.48503 * 109.46864 * 209.99910 * 18 16 14 21 21 H 1.48497 * 109.47040 * 329.99627 * 18 16 14 22 22 C 1.47419 * 125.64878 * 180.02562 * 9 7 5 23 23 C 1.52999 * 109.47579 * 239.99962 * 2 1 3 24 24 C 1.53177 * 109.54511 * 179.55471 * 23 2 1 25 25 C 1.53092 * 109.16130 * 183.15234 * 24 23 2 26 26 O 1.42895 * 109.41663 * 57.61168 * 25 24 23 27 27 C 1.42912 * 114.09789 * 298.84073 * 26 25 24 28 28 C 1.53094 * 109.41223 * 61.15814 * 27 26 25 29 29 H 1.08998 * 109.46936 * 300.00144 * 1 2 3 30 30 H 1.09003 * 109.47063 * 60.00023 * 1 2 3 31 31 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99454 * 95.00746 * 4 2 1 33 33 H 1.08995 * 109.88767 * 298.38802 * 10 9 7 34 34 H 1.08997 * 109.88458 * 59.56136 * 10 9 7 35 35 H 1.09004 * 110.85115 * 219.67615 * 11 10 9 36 36 H 1.08991 * 110.66849 * 96.52121 * 11 10 9 37 37 H 0.96697 * 114.00243 * 173.64443 * 13 12 11 38 38 H 0.97004 * 120.00606 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.36561 * 322.93129 * 22 9 7 40 40 H 1.09000 * 110.36383 * 85.15040 * 22 9 7 41 41 H 1.09001 * 109.53889 * 299.82489 * 23 2 1 42 42 H 1.09003 * 109.52526 * 303.06039 * 24 23 2 43 43 H 1.08999 * 109.52322 * 63.25214 * 24 23 2 44 44 H 1.08998 * 109.48143 * 297.62409 * 25 24 23 45 45 H 1.09004 * 109.48032 * 177.59536 * 25 24 23 46 46 H 1.08997 * 109.47751 * 301.17463 * 27 26 25 47 47 H 1.08996 * 109.49032 * 181.14474 * 27 26 25 48 48 H 1.09002 * 109.51672 * 182.48885 * 28 27 26 49 49 H 1.08998 * 109.52352 * 62.29744 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8580 1.1591 2.4118 7 6 2.6393 -0.7242 3.5790 8 8 2.9279 -1.9016 3.5245 9 7 2.7627 -0.0532 4.7413 10 6 2.4559 1.3700 4.9457 11 6 2.7190 1.6862 6.4333 12 6 2.6263 0.2924 7.1087 13 8 1.2668 -0.0590 7.3737 14 6 3.4489 0.2470 8.3706 15 1 3.9165 1.1464 8.7430 16 6 3.6043 -0.9429 9.0496 17 7 3.0344 -2.0380 8.5964 18 14 4.6234 -0.9991 10.6142 19 1 3.7490 -0.7324 11.7843 20 1 5.2416 -2.3421 10.7541 21 1 5.6897 0.0322 10.5477 22 6 3.2342 -0.6232 6.0165 23 6 2.0401 -0.7212 -1.2492 24 6 3.5718 -0.7125 -1.2564 25 6 4.0720 -1.3660 -2.5473 26 8 3.5367 -0.6663 -3.6723 27 6 2.1094 -0.6815 -3.7438 28 6 1.5304 -0.0004 -2.5010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2490 -1.6317 1.1526 33 1 3.1002 1.9825 4.3151 34 1 1.4097 1.5617 4.7074 35 1 1.9563 2.3575 6.8281 36 1 3.7129 2.1136 6.5658 37 1 1.1509 -0.9598 7.7055 38 1 3.1441 -2.8752 9.0739 39 1 2.8715 -1.6444 6.1327 40 1 4.3230 -0.6004 6.0626 41 1 1.6800 -1.7500 -1.2488 42 1 3.9305 0.3156 -1.2059 43 1 3.9434 -1.2714 -0.3976 44 1 3.7470 -2.4060 -2.5778 45 1 5.1608 -1.3242 -2.5777 46 1 1.7588 -1.7125 -3.7900 47 1 1.7843 -0.1467 -4.6361 48 1 0.4420 -0.0501 -2.5322 49 1 1.8478 1.0420 -2.4757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328303432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:16 Heat of formation + Delta-G solvation = -193.894953 kcal Electronic energy + Delta-G solvation = -30823.752530 eV Core-core repulsion = 26556.549261 eV Total energy + Delta-G solvation = -4267.203269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92414 -40.70479 -39.84132 -38.88771 -37.42885 -36.10239 -34.25205 -34.09644 -32.20031 -31.96064 -30.95872 -29.70385 -27.74072 -26.56167 -25.48475 -24.38762 -23.66733 -22.10749 -21.62020 -21.44497 -20.62184 -19.16219 -18.77210 -18.05360 -17.28763 -17.21246 -17.07601 -16.93306 -16.83323 -16.26801 -15.98521 -15.66056 -15.57087 -15.15130 -14.89073 -14.68645 -14.65081 -14.56635 -14.29782 -13.97724 -13.66095 -13.52020 -13.40872 -13.30594 -12.85269 -12.76326 -12.67162 -12.55344 -12.50611 -12.37135 -12.24538 -12.23262 -12.12266 -11.80281 -11.58229 -11.22983 -11.22007 -10.75870 -10.59867 -10.54429 -10.33202 -10.25434 -9.65670 -8.25989 -6.42760 0.33805 1.26145 1.43578 1.45611 1.54795 2.11673 2.36692 2.50070 2.99835 3.00052 3.29033 3.48043 3.70558 3.75977 3.82423 4.04270 4.06442 4.13600 4.25608 4.26215 4.30852 4.35506 4.38724 4.58936 4.60736 4.65185 4.72033 4.77288 4.78480 4.84336 4.88199 4.93582 4.96223 5.04597 5.09645 5.12386 5.13500 5.24025 5.30012 5.32238 5.41047 5.42433 5.73539 5.98389 6.06650 6.29504 6.36484 6.61630 6.67572 6.92339 7.25673 7.33988 8.79663 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025000 B = 0.002322 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.733489 B =12054.599178 C =12510.482516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.080 0.920 4 N -0.684 5.684 5 C 0.519 3.481 6 O -0.530 6.530 7 C 0.500 3.500 8 O -0.561 6.561 9 N -0.583 5.583 10 C 0.120 3.880 11 C -0.116 4.116 12 C 0.233 3.767 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.028 3.972 17 N -0.914 5.914 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.106 3.894 23 C -0.090 4.090 24 C -0.153 4.153 25 C 0.061 3.939 26 O -0.406 6.406 27 C 0.056 3.944 28 C -0.144 4.144 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.416 0.584 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.374 0.626 38 H 0.270 0.730 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 2.213 -22.837 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.098 0.902 4 N -0.337 5.337 5 C 0.299 3.701 6 O -0.406 6.406 7 C 0.284 3.716 8 O -0.442 6.442 9 N -0.315 5.315 10 C -0.002 4.002 11 C -0.154 4.154 12 C 0.193 3.807 13 O -0.395 6.395 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.790 3.210 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.016 4.016 23 C -0.108 4.108 24 C -0.190 4.190 25 C -0.015 4.015 26 O -0.325 6.325 27 C -0.020 4.020 28 C -0.182 4.182 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.699 2.946 -23.225 23.566 hybrid contribution 0.612 -1.517 1.671 2.339 sum -2.087 1.429 -21.554 21.702 Atomic orbital electron populations 1.22224 0.93788 1.03114 1.02947 1.21249 0.95033 0.96917 0.82395 0.90226 1.45830 1.64639 1.14992 1.08244 1.19757 0.79065 0.86698 0.84582 1.90720 1.49300 1.15780 1.84824 1.20302 0.80233 0.86623 0.84485 1.90695 1.51933 1.16327 1.85199 1.48707 1.60836 1.12870 1.09046 1.22143 1.01311 0.79653 0.97056 1.22725 1.03058 0.97058 0.92523 1.19866 0.80024 0.90011 0.90811 1.86123 1.28798 1.36619 1.87974 1.21747 1.32423 0.95733 1.09362 0.91218 1.25811 0.95957 0.95042 1.00532 1.69817 1.44566 1.00214 1.40742 0.85445 0.78828 0.77436 0.79268 1.20180 1.21021 1.18995 1.23058 0.97991 0.99287 0.81275 1.21463 0.95247 1.00884 0.93251 1.22240 0.95740 1.02089 0.98976 1.22624 0.99328 0.95130 0.84446 1.87917 1.21852 1.76318 1.46450 1.22758 0.79949 1.00863 0.98444 1.22250 1.02458 1.00212 0.93299 0.94125 0.88685 0.91293 0.74729 0.89790 0.91285 0.89671 0.88962 0.77711 0.92037 0.92288 0.92585 0.88880 0.92013 0.90988 0.91960 0.88511 0.92006 0.87509 0.88237 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.13 71.98 0.66 -1.98 16 2 C 0.15 2.67 2.16 44.99 0.10 2.76 16 3 H 0.08 1.70 7.58 -2.38 -0.02 1.68 16 4 N -0.68 -16.30 4.44 -443.86 -1.97 -18.28 16 5 C 0.52 16.79 7.82 87.27 0.68 17.47 16 6 O -0.53 -18.34 13.79 -3.26 -0.04 -18.39 16 7 C 0.50 19.94 7.91 87.27 0.69 20.63 16 8 O -0.56 -24.51 16.73 -3.23 -0.05 -24.56 16 9 N -0.58 -24.70 3.33 -813.30 -2.70 -27.40 16 10 C 0.12 4.54 5.49 86.73 0.48 5.01 16 11 C -0.12 -4.62 6.13 31.79 0.19 -4.42 16 12 C 0.23 11.31 0.87 -10.14 -0.01 11.30 16 13 O -0.59 -30.27 13.16 -148.98 -1.96 -32.23 16 14 C -0.55 -28.54 8.27 25.60 0.21 -28.33 16 15 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 16 C 0.03 1.43 5.29 84.65 0.45 1.87 16 17 N -0.91 -48.80 10.69 21.45 0.23 -48.57 16 18 Si 0.96 41.17 29.54 68.60 2.03 43.19 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.11 5.13 5.38 86.87 0.47 5.60 16 23 C -0.09 -1.17 1.91 -10.67 -0.02 -1.19 16 24 C -0.15 -2.35 5.22 30.68 0.16 -2.19 16 25 C 0.06 0.86 6.84 72.01 0.49 1.36 16 26 O -0.41 -6.79 10.77 -148.98 -1.60 -8.39 16 27 C 0.06 0.61 6.84 72.01 0.49 1.10 16 28 C -0.14 -1.49 4.97 30.69 0.15 -1.34 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.06 6.51 -2.39 -0.02 1.04 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.42 9.16 7.90 -92.71 -0.73 8.43 16 33 H 0.08 2.85 7.71 -2.39 -0.02 2.83 16 34 H 0.07 2.62 7.57 -2.39 -0.02 2.61 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.09 3.38 8.03 -2.39 -0.02 3.37 16 37 H 0.37 19.92 7.56 -74.06 -0.56 19.36 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.06 3.21 7.33 -2.39 -0.02 3.19 16 40 H 0.06 2.78 8.03 -2.39 -0.02 2.76 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.19 7.59 -2.39 -0.02 1.17 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 0.67 6.62 -2.39 -0.02 0.65 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -63.39 387.96 -1.21 -64.60 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -0.32 Total: 42.36 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 5.20 Total: 27.67 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -4.45 Total: -94.25 kcal Atomic # 8 Polarization: -79.91 SS G_CDS: -3.66 Total: -83.57 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.39 -1.21 -64.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328303432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.298 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds