Wall clock time and date at job start Tue Mar 31 2020 23:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47576 * 2 1 4 4 N 1.46497 * 109.47265 * 239.99753 * 2 1 3 5 5 C 1.34774 * 120.00160 * 85.00265 * 4 2 1 6 6 O 1.21352 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.49452 * 120.00254 * 180.02562 * 5 4 2 8 8 O 1.21352 * 120.00006 * 359.97438 * 7 5 4 9 9 N 1.34774 * 120.00254 * 180.02562 * 7 5 4 10 10 C 1.47428 * 125.64689 * 0.04084 * 9 7 5 11 11 C 1.54908 * 104.83289 * 204.09521 * 10 9 7 12 12 C 1.55403 * 101.66435 * 323.07342 * 11 10 9 13 13 O 1.42899 * 110.69613 * 277.05082 * 12 11 10 14 14 C 1.50701 * 110.85319 * 153.69992 * 12 11 10 15 15 H 1.07996 * 120.00161 * 271.39795 * 14 12 11 16 16 C 1.37883 * 119.99892 * 91.39818 * 14 12 11 17 17 N 1.31509 * 119.99763 * 173.70003 * 16 14 12 18 18 Si 1.86800 * 119.99963 * 353.70114 * 16 14 12 19 19 H 1.48497 * 109.47169 * 87.22793 * 18 16 14 20 20 H 1.48495 * 109.46906 * 207.22739 * 18 16 14 21 21 H 1.48502 * 109.46999 * 327.22691 * 18 16 14 22 22 C 1.47022 * 125.65196 * 179.97438 * 9 7 5 23 23 C 1.53000 * 109.47012 * 119.99860 * 2 1 3 24 24 C 1.53183 * 109.54474 * 59.82263 * 23 2 1 25 25 C 1.53103 * 109.15792 * 183.24195 * 24 23 2 26 26 O 1.42909 * 109.48666 * 57.47524 * 25 24 23 27 27 C 1.42901 * 114.09675 * 298.88711 * 26 25 24 28 28 C 1.53096 * 109.41603 * 61.15625 * 27 26 25 29 29 H 1.08999 * 109.47118 * 300.00648 * 1 2 3 30 30 H 1.09007 * 109.46865 * 59.99776 * 1 2 3 31 31 H 1.08994 * 109.47576 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00221 * 265.00275 * 4 2 1 33 33 H 1.08997 * 110.36559 * 322.92920 * 10 9 7 34 34 H 1.08997 * 110.36755 * 85.14191 * 10 9 7 35 35 H 1.08998 * 111.00879 * 81.06317 * 11 10 9 36 36 H 1.09001 * 111.00186 * 204.91780 * 11 10 9 37 37 H 0.96696 * 114.00143 * 169.58148 * 13 12 11 38 38 H 0.97003 * 119.99984 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.88051 * 298.39735 * 22 9 7 40 40 H 1.09004 * 109.88072 * 59.40240 * 22 9 7 41 41 H 1.09002 * 109.54635 * 179.97438 * 23 2 1 42 42 H 1.09005 * 109.51962 * 303.06090 * 24 23 2 43 43 H 1.08999 * 109.52103 * 63.24153 * 24 23 2 44 44 H 1.08995 * 109.40519 * 297.49126 * 25 24 23 45 45 H 1.09001 * 109.47932 * 177.50068 * 25 24 23 46 46 H 1.09007 * 109.48005 * 301.17620 * 27 26 25 47 47 H 1.08997 * 109.49192 * 181.15234 * 27 26 25 48 48 H 1.09004 * 109.52407 * 182.48568 * 28 27 26 49 49 H 1.09003 * 109.57179 * 62.32866 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8589 1.1592 -2.4115 7 6 2.6447 -0.7231 -3.5775 8 8 2.9333 -1.9005 -3.5229 9 7 2.7740 -0.0507 -4.7383 10 6 2.4629 1.3756 -4.9443 11 6 2.1731 1.5033 -6.4607 12 6 3.2044 0.5088 -7.0626 13 8 4.4852 1.1283 -7.1954 14 6 2.7267 -0.0216 -8.3898 15 1 2.1091 -0.9067 -8.4270 16 6 3.0783 0.6232 -9.5568 17 7 2.7674 0.0939 -10.7198 18 14 3.9963 2.2485 -9.4857 19 1 5.4566 1.9895 -9.4120 20 1 3.6950 3.0408 -10.7049 21 1 3.5668 3.0074 -8.2836 22 6 3.2499 -0.6176 -6.0086 23 6 2.0399 -0.7212 1.2493 24 6 1.5266 -2.1645 1.2532 25 6 1.9740 -2.8534 2.5452 26 8 1.4891 -2.1176 3.6704 27 6 1.9757 -0.7760 3.7438 28 6 1.5266 -0.0030 2.5010 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1525 33 1 1.5845 1.6598 -4.3650 34 1 3.3163 1.9941 -4.6661 35 1 1.1538 1.1932 -6.6912 36 1 2.3591 2.5190 -6.8098 37 1 5.1988 0.5134 -7.4141 38 1 3.0151 0.5473 -11.5408 39 1 4.2724 -0.9773 -5.8940 40 1 2.6007 -1.4380 -6.3147 41 1 3.1299 -0.7223 1.2503 42 1 0.4378 -2.1639 1.2003 43 1 1.9335 -2.6982 0.3944 44 1 3.0628 -2.8909 2.5773 45 1 1.5741 -3.8670 2.5740 46 1 3.0647 -0.7864 3.7916 47 1 1.5774 -0.2930 4.6361 48 1 1.9337 1.0077 2.5338 49 1 0.4379 0.0435 2.4736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328303434.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:22 Heat of formation + Delta-G solvation = -185.935108 kcal Electronic energy + Delta-G solvation = -30714.704505 eV Core-core repulsion = 26447.846400 eV Total energy + Delta-G solvation = -4266.858105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01791 -40.84183 -39.97011 -39.08289 -37.51654 -36.44023 -34.47150 -34.11590 -32.04414 -32.01793 -30.86782 -30.12156 -27.89080 -26.67592 -25.43466 -24.58331 -23.81828 -22.57380 -21.61591 -21.11391 -20.35361 -19.58620 -18.89600 -18.07482 -17.43431 -17.19846 -17.08863 -16.91741 -16.73233 -16.58341 -16.20671 -15.77149 -15.66093 -15.47942 -15.24457 -14.69604 -14.60816 -14.56680 -14.20869 -14.01809 -13.96289 -13.78723 -13.44372 -13.29319 -13.22827 -12.99949 -12.83743 -12.50048 -12.44499 -12.33511 -12.24305 -11.98952 -11.95777 -11.91829 -11.55001 -11.24458 -11.09750 -10.69101 -10.59818 -10.54438 -10.41958 -10.28594 -9.83545 -8.34606 -6.49164 0.28835 1.18280 1.51503 1.55363 1.75847 2.06913 2.39734 2.46263 2.96258 3.00551 3.23293 3.47775 3.54426 3.65722 3.77956 3.79503 3.99375 4.08657 4.20927 4.26375 4.29932 4.31601 4.34965 4.38198 4.53895 4.63572 4.66714 4.74350 4.77546 4.80966 4.82671 4.88411 4.90039 4.93621 5.04425 5.13350 5.14056 5.15183 5.17033 5.29527 5.33424 5.46292 5.49049 5.96998 6.04404 6.25317 6.30006 6.55852 6.59454 6.87565 6.91676 7.28974 8.78104 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032447 B = 0.002217 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.750439 B =12627.141235 C =12936.214123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.685 5.685 5 C 0.518 3.482 6 O -0.528 6.528 7 C 0.508 3.492 8 O -0.554 6.554 9 N -0.581 5.581 10 C 0.109 3.891 11 C -0.124 4.124 12 C 0.220 3.780 13 O -0.559 6.559 14 C -0.549 4.549 15 H 0.043 0.957 16 C 0.026 3.974 17 N -0.935 5.935 18 Si 1.008 2.992 19 H -0.281 1.281 20 H -0.338 1.338 21 H -0.255 1.255 22 C 0.097 3.903 23 C -0.091 4.091 24 C -0.157 4.157 25 C 0.059 3.941 26 O -0.404 6.404 27 C 0.057 3.943 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.415 0.585 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.384 0.616 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.056 0.944 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 0.046 29.532 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.339 5.339 5 C 0.298 3.702 6 O -0.405 6.405 7 C 0.291 3.709 8 O -0.433 6.433 9 N -0.314 5.314 10 C -0.012 4.012 11 C -0.162 4.162 12 C 0.179 3.821 13 O -0.368 6.368 14 C -0.587 4.587 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.573 5.573 18 Si 0.842 3.158 19 H -0.208 1.208 20 H -0.270 1.270 21 H -0.180 1.180 22 C -0.026 4.026 23 C -0.110 4.110 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.323 6.323 27 C -0.019 4.019 28 C -0.185 4.185 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.124 0.876 48 H 0.107 0.893 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.543 0.660 29.722 29.769 hybrid contribution 0.858 -0.533 -1.321 1.663 sum -0.685 0.127 28.401 28.410 Atomic orbital electron populations 1.22284 0.94243 1.02996 1.02807 1.21190 0.94961 0.97016 0.82394 0.89486 1.45911 1.64547 1.15123 1.08293 1.19764 0.79089 0.86705 0.84641 1.90712 1.49493 1.15763 1.84494 1.20174 0.80028 0.86489 0.84190 1.90715 1.51502 1.16081 1.85041 1.48474 1.61270 1.12889 1.08732 1.22670 1.02408 0.79616 0.96524 1.23147 0.99229 1.00762 0.93052 1.19991 0.81799 0.88879 0.91413 1.86097 1.18966 1.40408 1.91352 1.21342 1.33869 1.12986 0.90455 0.93848 1.25888 0.95714 1.01434 0.94406 1.70082 1.47833 1.40765 0.98576 0.84713 0.78371 0.78355 0.74403 1.20794 1.27018 1.18007 1.22786 0.99630 0.97847 0.82295 1.21429 1.01026 0.95230 0.93286 1.22358 1.02741 0.95438 0.98932 1.22646 0.98747 0.95698 0.84641 1.87923 1.72217 1.25537 1.46605 1.22713 0.98790 0.81961 0.98480 1.22269 1.02759 1.00087 0.93360 0.89207 0.93833 0.91393 0.74646 0.88072 0.90424 0.90205 0.89581 0.76642 0.92348 0.90716 0.91986 0.89952 0.90248 0.90475 0.92571 0.88073 0.92590 0.87592 0.89279 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 8.78 71.98 0.63 -1.81 16 2 C 0.15 2.27 2.41 44.99 0.11 2.37 16 3 H 0.09 1.52 7.58 -2.39 -0.02 1.50 16 4 N -0.68 -13.81 4.99 -443.89 -2.22 -16.02 16 5 C 0.52 14.31 7.82 87.27 0.68 14.99 16 6 O -0.53 -15.98 13.44 -3.25 -0.04 -16.03 16 7 C 0.51 16.92 7.91 87.27 0.69 17.61 16 8 O -0.55 -20.15 16.80 -3.25 -0.05 -20.20 16 9 N -0.58 -20.63 3.33 -813.36 -2.71 -23.34 16 10 C 0.11 3.66 6.06 86.85 0.53 4.19 16 11 C -0.12 -4.76 5.97 32.07 0.19 -4.57 16 12 C 0.22 9.36 0.68 -10.26 -0.01 9.35 16 13 O -0.56 -22.30 8.49 -148.98 -1.27 -23.57 16 14 C -0.55 -29.07 8.82 25.60 0.23 -28.84 16 15 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 16 C 0.03 1.42 5.46 84.66 0.46 1.88 16 17 N -0.94 -56.13 13.96 21.45 0.30 -55.83 16 18 Si 1.01 46.80 24.90 68.60 1.71 48.51 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.34 -16.29 7.11 99.48 0.71 -15.58 16 21 H -0.25 -11.20 5.33 99.48 0.53 -10.67 16 22 C 0.10 3.80 6.20 86.73 0.54 4.34 16 23 C -0.09 -1.00 2.26 -10.67 -0.02 -1.02 16 24 C -0.16 -1.71 4.92 30.69 0.15 -1.56 16 25 C 0.06 0.66 6.84 72.02 0.49 1.15 16 26 O -0.40 -5.81 10.77 -148.98 -1.60 -7.41 16 27 C 0.06 0.55 6.84 72.01 0.49 1.04 16 28 C -0.15 -1.30 5.15 30.69 0.16 -1.14 16 29 H 0.09 0.99 6.36 -2.39 -0.02 0.97 16 30 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.94 6.36 -2.39 -0.02 0.92 16 32 H 0.42 7.62 6.41 -92.71 -0.59 7.03 16 33 H 0.10 3.21 6.16 -2.39 -0.01 3.20 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.08 3.13 8.04 -2.39 -0.02 3.11 16 36 H 0.09 3.29 6.55 -2.39 -0.02 3.28 16 37 H 0.38 13.26 8.90 -74.06 -0.66 12.60 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.07 2.76 7.97 -2.39 -0.02 2.74 16 40 H 0.06 2.65 7.66 -2.38 -0.02 2.63 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.92 6.28 -2.38 -0.01 0.90 16 43 H 0.08 0.81 6.64 -2.39 -0.02 0.80 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 47 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 0.73 6.28 -2.39 -0.01 0.72 16 Total: -1.00 -68.02 374.83 -1.00 -69.02 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.44 Total: 26.87 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 5.32 Total: 17.99 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.62 Total: -95.19 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -2.97 Total: -67.21 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.71 Total: 48.51 kcal Total: -68.02 -1.00 -69.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328303434.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.919 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds