Wall clock time and date at job start Tue Mar 31 2020 23:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 O 1.45199 * 109.47248 * 119.99955 * 2 1 3 5 5 C 1.34231 * 117.00225 * 149.99962 * 4 2 1 6 6 O 1.20824 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99975 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47524 * 300.00085 * 7 5 4 9 9 C 1.52998 * 109.46997 * 60.00532 * 7 5 4 10 10 C 1.53004 * 109.46982 * 180.02562 * 7 5 4 11 11 N 1.46498 * 109.47217 * 175.00277 * 10 7 5 12 12 C 1.34781 * 120.00191 * 180.27353 * 11 10 7 13 13 O 1.21341 * 119.99620 * 359.72680 * 12 11 10 14 14 C 1.49447 * 119.99865 * 179.72319 * 12 11 10 15 15 O 1.21346 * 120.00214 * 354.49111 * 14 12 11 16 16 N 1.34776 * 119.99952 * 174.48900 * 14 12 11 17 17 C 1.46494 * 120.00317 * 185.59471 * 16 14 12 18 18 C 1.53002 * 109.47263 * 185.19465 * 17 16 14 19 19 C 1.50701 * 115.54954 * 57.83436 * 18 17 16 20 20 H 1.07996 * 120.00282 * 264.65789 * 19 18 17 21 21 C 1.37886 * 119.99775 * 84.65552 * 19 18 17 22 22 N 1.31516 * 120.00093 * 1.96725 * 21 19 18 23 23 Si 1.86797 * 119.99840 * 181.97017 * 21 19 18 24 24 H 1.48500 * 109.47316 * 90.00082 * 23 21 19 25 25 H 1.48500 * 109.47188 * 209.99930 * 23 21 19 26 26 H 1.48502 * 109.47005 * 329.99706 * 23 21 19 27 27 C 1.52994 * 117.49935 * 272.16491 * 18 17 16 28 28 C 1.53006 * 117.49836 * 203.50385 * 18 17 16 29 29 H 1.08993 * 109.47184 * 299.99861 * 1 2 3 30 30 H 1.09000 * 109.47132 * 60.00495 * 1 2 3 31 31 H 1.09005 * 109.46657 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47353 * 240.00304 * 2 1 3 33 33 H 1.09001 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47289 * 300.00261 * 3 2 1 35 35 H 1.09007 * 109.47259 * 60.00056 * 3 2 1 36 36 H 1.08994 * 109.47420 * 59.99980 * 9 7 5 37 37 H 1.09007 * 109.46997 * 179.97438 * 9 7 5 38 38 H 1.09001 * 109.47305 * 299.99558 * 9 7 5 39 39 H 1.08994 * 109.47271 * 54.99863 * 10 7 5 40 40 H 1.09004 * 109.47062 * 295.00111 * 10 7 5 41 41 H 0.97002 * 120.00150 * 359.97438 * 11 10 7 42 42 H 0.97002 * 119.99635 * 5.59106 * 16 14 12 43 43 H 1.08998 * 109.47146 * 305.19455 * 17 16 14 44 44 H 1.08995 * 109.47495 * 65.19481 * 17 16 14 45 45 H 0.96993 * 120.00073 * 185.01449 * 22 21 19 46 46 H 1.08997 * 117.49979 * 0.02562 * 27 18 17 47 47 H 1.09009 * 117.49838 * 145.01952 * 27 18 17 48 48 H 1.08996 * 117.49600 * 214.97910 * 28 18 17 49 49 H 1.08993 * 117.50048 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3170 1.0851 6 8 3.8019 -1.2989 0.0413 7 6 3.7599 -2.0487 2.2746 8 1 3.9061 -1.3478 3.0965 9 6 2.7872 -3.1473 2.7080 10 6 5.1028 -2.6763 1.8954 11 7 5.7095 -3.2854 3.0816 12 6 6.9069 -3.8970 2.9874 13 8 7.4799 -3.9475 1.9190 14 6 7.5286 -4.5129 4.1988 15 8 7.0056 -4.3764 5.2852 16 7 8.6704 -5.2200 4.0846 17 6 9.2142 -5.9258 5.2474 18 6 10.5698 -6.5360 4.8855 19 6 11.6130 -5.5616 4.4022 20 1 11.7536 -5.4022 3.3434 21 6 12.3878 -4.8737 5.3119 22 7 12.2434 -5.0963 6.6001 23 14 13.6427 -3.6255 4.7148 24 1 13.0048 -2.2878 4.6217 25 1 14.7771 -3.5674 5.6714 26 1 14.1441 -4.0291 3.3765 27 6 10.5724 -7.9366 4.2700 28 6 11.0488 -7.7324 5.7103 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.6411 -3.8482 1.8862 37 1 3.1971 -3.6768 3.5682 38 1 1.8308 -2.6998 2.9784 39 1 5.7661 -1.9056 1.5030 40 1 4.9445 -3.4411 1.1349 41 1 5.2516 -3.2447 3.9357 42 1 9.1319 -5.2615 3.2325 43 1 9.3401 -5.2243 6.0721 44 1 8.5274 -6.7177 5.5458 45 1 12.7352 -4.5617 7.2428 46 1 9.6083 -8.4232 4.1224 47 1 11.3288 -8.1535 3.5156 48 1 12.1185 -7.8149 5.9029 49 1 10.3985 -8.0845 6.5109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329379266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:11 Heat of formation + Delta-G solvation = -167.771050 kcal Electronic energy + Delta-G solvation = -29250.325262 eV Core-core repulsion = 24984.254810 eV Total energy + Delta-G solvation = -4266.070452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95965 -41.54297 -39.75350 -38.45714 -38.26620 -37.03194 -35.13128 -34.33942 -33.97189 -33.37365 -29.01526 -28.21426 -27.92255 -27.27386 -25.90112 -24.16846 -22.90874 -22.30770 -21.57540 -21.39649 -21.11016 -19.60636 -18.86716 -18.05002 -17.93759 -17.57853 -17.10144 -16.97144 -16.66813 -16.34095 -16.18227 -15.93370 -15.50702 -15.26137 -15.08604 -14.79826 -14.68241 -14.42331 -14.07532 -13.89575 -13.68136 -13.47960 -13.37459 -13.17829 -13.15164 -12.93799 -12.85724 -12.77843 -12.75420 -12.57322 -12.38267 -12.26531 -12.00498 -11.91019 -11.62932 -11.43635 -11.40803 -10.98491 -10.76265 -10.43248 -10.41595 -10.17559 -9.88130 -8.11905 -6.24021 0.36877 1.06542 1.13876 1.39774 1.42919 1.50443 1.71222 2.16137 2.41262 2.73150 3.16844 3.27463 3.43729 3.60145 3.64892 3.72121 3.80218 3.93363 4.08817 4.14189 4.22207 4.50713 4.52497 4.59300 4.65192 4.65631 4.68353 4.74361 4.77290 4.83906 4.85420 4.87595 4.94743 5.03879 5.05123 5.12439 5.21299 5.23882 5.29992 5.36853 5.46411 5.55271 5.68573 5.76724 5.95184 6.35641 6.45701 6.62537 6.76020 6.82837 7.00544 7.45432 8.95523 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.001978 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.370747 B =14152.556999 C =14919.245618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 C -0.169 4.169 4 O -0.347 6.347 5 C 0.475 3.525 6 O -0.536 6.536 7 C -0.088 4.088 8 H 0.143 0.857 9 C -0.145 4.145 10 C 0.135 3.865 11 N -0.684 5.684 12 C 0.516 3.484 13 O -0.540 6.540 14 C 0.498 3.502 15 O -0.553 6.553 16 N -0.668 5.668 17 C 0.174 3.826 18 C -0.007 4.007 19 C -0.504 4.504 20 H 0.056 0.944 21 C 0.028 3.972 22 N -0.902 5.902 23 Si 0.942 3.058 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.268 1.268 27 C -0.181 4.181 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.423 0.577 42 H 0.415 0.585 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.747 8.547 -9.411 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 C -0.226 4.226 4 O -0.264 6.264 5 C 0.318 3.682 6 O -0.425 6.425 7 C -0.107 4.107 8 H 0.160 0.840 9 C -0.202 4.202 10 C 0.011 3.989 11 N -0.339 5.339 12 C 0.296 3.704 13 O -0.417 6.417 14 C 0.279 3.721 15 O -0.433 6.433 16 N -0.317 5.317 17 C 0.051 3.949 18 C -0.007 4.007 19 C -0.541 4.541 20 H 0.074 0.926 21 C -0.173 4.173 22 N -0.539 5.539 23 Si 0.769 3.231 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.192 1.192 27 C -0.218 4.218 28 C -0.185 4.185 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.262 0.738 42 H 0.251 0.749 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.441 8.617 -9.569 28.514 hybrid contribution 1.304 0.815 -0.199 1.550 sum -24.137 9.432 -9.768 27.694 Atomic orbital electron populations 1.21902 0.90088 1.03678 1.04442 1.23031 0.96682 0.92821 0.85919 1.22224 1.00977 0.94904 1.04513 1.86549 1.35649 1.62231 1.41980 1.23613 0.79302 0.75800 0.89478 1.90702 1.60087 1.59650 1.32069 1.21175 0.94518 0.99496 0.95532 0.83957 1.21862 0.99053 0.96507 1.02801 1.21211 0.92811 0.98059 0.86791 1.45503 1.19116 1.55118 1.14122 1.20023 0.82458 0.79627 0.88254 1.90771 1.62576 1.58612 1.29725 1.20202 0.82553 0.80360 0.89025 1.90700 1.63740 1.60539 1.28322 1.45769 1.22658 1.47736 1.15569 1.20823 0.93445 0.94282 0.86351 1.19117 0.92719 0.87410 1.01480 1.20627 1.17184 1.23817 0.92502 0.92551 1.25613 0.98143 0.98379 0.95160 1.70079 1.43321 1.39358 1.01180 0.85794 0.79224 0.79733 0.78350 1.20843 1.21144 1.19237 1.23060 1.01672 1.01124 0.95969 1.22398 0.99470 1.03732 0.92914 0.90666 0.88554 0.91592 0.91006 0.93860 0.88846 0.90596 0.91977 0.89640 0.89090 0.91227 0.90573 0.73751 0.74898 0.93828 0.92300 0.93149 0.88800 0.90096 0.91828 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.57 71.98 0.69 -0.37 16 2 C 0.07 0.91 3.18 30.59 0.10 1.01 16 3 C -0.17 -1.94 9.55 71.98 0.69 -1.25 16 4 O -0.35 -5.41 9.78 -51.42 -0.50 -5.91 16 5 C 0.47 8.72 7.23 71.23 0.51 9.24 16 6 O -0.54 -13.55 15.14 21.97 0.33 -13.21 16 7 C -0.09 -1.23 2.86 -11.54 -0.03 -1.26 16 8 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 9 C -0.15 -1.48 9.00 71.98 0.65 -0.84 16 10 C 0.13 2.77 4.41 86.38 0.38 3.15 16 11 N -0.68 -15.59 5.28 -464.42 -2.45 -18.04 16 12 C 0.52 16.38 7.89 87.27 0.69 17.06 16 13 O -0.54 -19.93 16.49 -3.22 -0.05 -19.99 16 14 C 0.50 18.24 7.88 87.27 0.69 18.93 16 15 O -0.55 -21.64 16.46 -3.23 -0.05 -21.69 16 16 N -0.67 -26.49 5.37 -464.44 -2.49 -28.98 16 17 C 0.17 7.60 5.57 86.38 0.48 8.08 16 18 C -0.01 -0.30 1.51 -52.93 -0.08 -0.38 16 19 C -0.50 -26.14 8.38 25.60 0.21 -25.93 16 20 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 21 C 0.03 1.50 5.43 84.66 0.46 1.96 16 22 N -0.90 -50.41 12.72 21.45 0.27 -50.14 16 23 Si 0.94 43.27 29.54 68.60 2.03 45.29 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 C -0.18 -7.16 9.94 30.62 0.30 -6.86 16 28 C -0.15 -6.52 9.26 30.62 0.28 -6.24 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 1.15 7.16 -2.39 -0.02 1.13 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.77 7.18 -2.38 -0.02 0.76 16 38 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 39 H 0.07 1.69 7.95 -2.39 -0.02 1.67 16 40 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.42 7.85 7.14 -92.71 -0.66 7.19 16 42 H 0.41 16.40 7.73 -92.71 -0.72 15.68 16 43 H 0.04 2.20 8.09 -2.39 -0.02 2.18 16 44 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 45 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 46 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 48 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 49 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -67.38 417.21 2.69 -64.69 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.42 Total: 31.66 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.02 Total: 16.32 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -4.67 Total: -97.16 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.28 Total: -60.81 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.38 2.69 -64.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329379266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.081 kcal (2) G-P(sol) polarization free energy of solvation -67.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds