Wall clock time and date at job start Tue Mar 31 2020 23:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.67382 * 2 1 4 4 C 1.53291 * 109.68047 * 120.51770 * 2 1 3 5 5 O 1.42959 * 109.22580 * 67.46190 * 4 2 1 6 6 C 1.42966 * 114.16675 * 62.57631 * 5 4 2 7 7 C 1.52999 * 109.51127 * 57.34599 * 6 5 4 8 8 C 1.53004 * 109.51347 * 177.49688 * 6 5 4 9 9 C 1.53292 * 109.22160 * 297.42328 * 6 5 4 10 10 N 1.47145 * 109.71546 * 239.46467 * 2 1 3 11 11 C 1.34777 * 120.98266 * 110.80833 * 10 2 1 12 12 O 1.21344 * 120.00020 * 357.42032 * 11 10 2 13 13 C 1.49454 * 119.99992 * 177.41534 * 11 10 2 14 14 O 1.21348 * 120.00003 * 6.08980 * 13 11 10 15 15 N 1.34775 * 119.99798 * 186.09701 * 13 11 10 16 16 C 1.47424 * 125.65089 * 359.68321 * 15 13 11 17 17 C 1.55124 * 104.72177 * 155.82490 * 16 15 13 18 18 C 1.55152 * 101.48875 * 37.29602 * 17 16 15 19 19 O 1.42904 * 110.87389 * 82.76561 * 18 17 16 20 20 C 1.50701 * 110.72400 * 205.96832 * 18 17 16 21 21 H 1.07996 * 119.99878 * 356.23930 * 20 18 17 22 22 C 1.37875 * 120.00012 * 176.23023 * 20 18 17 23 23 N 1.31513 * 120.00121 * 354.88289 * 22 20 18 24 24 Si 1.86805 * 119.99959 * 174.88157 * 22 20 18 25 25 H 1.48509 * 109.46789 * 94.99945 * 24 22 20 26 26 H 1.48494 * 109.47025 * 214.99712 * 24 22 20 27 27 H 1.48495 * 109.47069 * 335.00294 * 24 22 20 28 28 C 1.47028 * 125.64312 * 180.02562 * 15 13 11 29 29 H 1.08994 * 109.47364 * 299.47983 * 1 2 3 30 30 H 1.08994 * 109.47488 * 59.48336 * 1 2 3 31 31 H 1.09002 * 109.46573 * 179.47924 * 1 2 3 32 32 H 1.08999 * 109.51301 * 307.53564 * 4 2 1 33 33 H 1.09004 * 109.55132 * 187.41038 * 4 2 1 34 34 H 1.09000 * 109.47188 * 59.99866 * 7 6 5 35 35 H 1.08998 * 109.47666 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47398 * 300.00248 * 7 6 5 37 37 H 1.09003 * 109.46705 * 60.00193 * 8 6 5 38 38 H 1.08994 * 109.46839 * 179.97438 * 8 6 5 39 39 H 1.08998 * 109.47004 * 300.00456 * 8 6 5 40 40 H 1.09004 * 109.68313 * 172.02284 * 9 6 5 41 41 H 1.09001 * 109.68533 * 292.57850 * 9 6 5 42 42 H 1.08997 * 110.36741 * 274.75264 * 16 15 13 43 43 H 1.09004 * 110.36150 * 37.07763 * 16 15 13 44 44 H 1.09007 * 111.19233 * 279.19848 * 17 16 15 45 45 H 1.08999 * 110.94042 * 155.29430 * 17 16 15 46 46 H 0.96696 * 114.00107 * 184.93284 * 19 18 17 47 47 H 0.97000 * 120.00030 * 179.97438 * 23 22 20 48 48 H 1.08992 * 109.88088 * 300.43100 * 28 15 13 49 49 H 1.08995 * 109.88681 * 61.60197 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0463 -0.7329 1.2434 5 8 1.7176 -2.1206 1.1423 6 6 2.3275 -2.7873 0.0344 7 6 3.8477 -2.6378 0.1219 8 6 1.9564 -4.2713 0.0636 9 6 1.8256 -2.1595 -1.2709 10 7 2.0264 -0.7038 -1.1931 11 6 2.6469 -0.0349 -2.1851 12 8 2.7617 1.1715 -2.1242 13 6 3.1936 -0.7792 -3.3602 14 8 2.9834 -1.9687 -3.4763 15 7 3.9203 -0.1293 -4.2908 16 6 4.2449 1.3087 -4.2775 17 6 5.5363 1.4292 -5.1285 18 6 5.2723 0.3803 -6.2408 19 8 4.4605 0.9325 -7.2791 20 6 6.5706 -0.1403 -6.8018 21 1 7.5094 0.2704 -6.4608 22 6 6.5598 -1.1411 -7.7500 23 7 5.4249 -1.7112 -8.0916 24 14 8.1571 -1.6873 -8.5498 25 1 8.6957 -2.8664 -7.8250 26 1 7.9021 -2.0513 -9.9667 27 1 9.1434 -0.5787 -8.4932 28 6 4.5146 -0.7358 -5.4911 29 1 -0.3634 0.5057 0.8945 30 1 -0.3634 0.5218 -0.8852 31 1 -0.3632 -1.0277 -0.0093 32 1 1.5795 -0.3122 2.1340 33 1 3.1282 -0.6190 1.3111 34 1 4.2033 -3.0803 1.0523 35 1 4.3121 -3.1466 -0.7228 36 1 4.1108 -1.5802 0.0987 37 1 0.8733 -4.3762 -0.0011 38 1 2.4213 -4.7787 -0.7816 39 1 2.3096 -4.7159 0.9940 40 1 2.3884 -2.5631 -2.1127 41 1 0.7654 -2.3775 -1.3993 42 1 3.4361 1.8843 -4.7276 43 1 4.4301 1.6462 -3.2577 44 1 6.4187 1.1662 -4.5450 45 1 5.6331 2.4297 -5.5499 46 1 4.2050 0.2949 -7.9598 47 1 5.4172 -2.4150 -8.7590 48 1 5.2083 -1.5254 -5.2027 49 1 3.7296 -1.1434 -6.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329454799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:27 Heat of formation + Delta-G solvation = -153.542403 kcal Electronic energy + Delta-G solvation = -32243.185633 eV Core-core repulsion = 27977.732182 eV Total energy + Delta-G solvation = -4265.453451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39044 -40.91640 -39.59760 -39.07943 -36.59611 -35.86768 -35.00591 -34.25814 -31.94695 -31.88659 -29.74661 -28.80915 -27.97662 -27.40051 -27.03434 -25.59240 -24.10623 -22.42408 -21.53169 -20.86079 -19.81262 -19.15348 -18.46607 -18.34574 -17.59767 -17.54879 -17.09424 -16.86888 -16.48046 -16.31207 -16.12081 -15.60813 -15.49628 -15.01495 -14.84389 -14.81176 -14.57834 -14.24210 -14.06997 -13.69625 -13.56052 -13.45193 -13.35040 -13.33738 -13.00987 -12.96363 -12.86637 -12.78569 -12.60976 -12.44948 -12.38427 -12.29695 -12.21406 -12.10951 -11.96662 -11.48513 -11.16671 -11.07534 -10.69291 -10.39283 -10.11381 -9.86987 -9.64830 -8.27639 -6.43225 0.23213 1.08843 1.41715 1.45249 1.54926 1.99692 2.20565 2.38701 2.71014 2.96818 3.01332 3.57180 3.73676 3.74394 3.83159 3.92076 3.98985 4.00449 4.11745 4.18017 4.30356 4.36396 4.51242 4.55213 4.59025 4.65211 4.68181 4.73075 4.77563 4.80852 4.85021 4.89003 4.94856 4.97893 5.04762 5.08310 5.15458 5.20836 5.28487 5.29791 5.30805 5.44562 5.71505 5.87311 6.01972 6.15469 6.25781 6.53447 6.64823 6.82366 7.25074 7.32194 8.78457 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.003219 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.580198 B = 8695.257988 C = 9534.754339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.093 3.907 3 H 0.105 0.895 4 C 0.053 3.947 5 O -0.374 6.374 6 C 0.103 3.897 7 C -0.172 4.172 8 C -0.132 4.132 9 C 0.029 3.971 10 N -0.572 5.572 11 C 0.516 3.484 12 O -0.531 6.531 13 C 0.504 3.496 14 O -0.539 6.539 15 N -0.580 5.580 16 C 0.110 3.890 17 C -0.114 4.114 18 C 0.234 3.766 19 O -0.586 6.586 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.031 3.969 23 N -0.913 5.913 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.281 1.281 27 H -0.268 1.268 28 C 0.121 3.879 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.376 0.624 47 H 0.271 0.729 48 H 0.050 0.950 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 -0.442 18.410 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.009 4.009 3 H 0.123 0.877 4 C -0.024 4.024 5 O -0.293 6.293 6 C 0.063 3.937 7 C -0.230 4.230 8 C -0.190 4.190 9 C -0.092 4.092 10 N -0.305 5.305 11 C 0.298 3.702 12 O -0.409 6.409 13 C 0.289 3.711 14 O -0.421 6.421 15 N -0.312 5.312 16 C -0.011 4.011 17 C -0.151 4.151 18 C 0.193 3.807 19 O -0.394 6.394 20 C -0.596 4.596 21 H 0.085 0.915 22 C -0.171 4.171 23 N -0.552 5.552 24 Si 0.788 3.212 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.192 1.192 28 C -0.001 4.001 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.481 -0.115 18.800 20.234 hybrid contribution 0.718 -0.850 -1.496 1.864 sum -6.763 -0.965 17.304 18.604 Atomic orbital electron populations 1.21968 0.92589 1.02871 1.03111 1.22280 0.96524 0.98003 0.84104 0.87711 1.23122 1.00494 0.81431 0.97313 1.87973 1.71421 1.21858 1.48041 1.21912 0.92353 0.94406 0.85047 1.22333 0.95509 1.01800 1.03328 1.21705 1.02946 0.90693 1.03649 1.23913 1.04053 0.78408 1.02798 1.48122 1.54485 1.09569 1.18356 1.19796 0.79639 0.87070 0.83683 1.90682 1.57880 1.13826 1.78469 1.20190 0.79977 0.86911 0.84066 1.90292 1.60124 1.15583 1.76091 1.48796 1.48096 1.11993 1.22280 1.22646 0.97344 0.79306 1.01838 1.22858 0.96534 1.00314 0.95442 1.19710 0.87791 0.88344 0.84831 1.86131 1.72469 1.42094 1.38663 1.21787 0.93101 1.20535 1.24215 0.91455 1.25760 0.99817 0.95115 0.96398 1.69833 1.27107 1.25753 1.32458 0.85473 0.79660 0.78390 0.77703 1.20331 1.20678 1.19211 1.22780 0.95689 0.97913 0.83710 0.88487 0.93537 0.91994 0.84592 0.92439 0.90239 0.91908 0.93489 0.91124 0.90375 0.90394 0.83745 0.90389 0.91329 0.88217 0.89523 0.89105 0.77546 0.91955 0.93173 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.25 71.98 0.67 -1.95 16 2 C 0.09 1.94 3.22 44.97 0.14 2.08 16 3 H 0.10 2.28 7.10 -2.39 -0.02 2.27 16 4 C 0.05 0.92 5.97 72.08 0.43 1.35 16 5 O -0.37 -7.58 9.87 -148.98 -1.47 -9.05 16 6 C 0.10 2.20 1.11 -10.70 -0.01 2.19 16 7 C -0.17 -3.78 8.09 71.98 0.58 -3.20 16 8 C -0.13 -2.31 8.85 71.98 0.64 -1.68 16 9 C 0.03 0.76 4.69 86.35 0.40 1.17 16 10 N -0.57 -15.59 2.23 -795.11 -1.77 -17.36 16 11 C 0.52 17.33 7.72 87.27 0.67 18.01 16 12 O -0.53 -18.67 13.35 -3.23 -0.04 -18.71 16 13 C 0.50 19.78 7.84 87.27 0.68 20.46 16 14 O -0.54 -22.27 13.36 -3.24 -0.04 -22.31 16 15 N -0.58 -24.24 3.32 -812.92 -2.70 -26.94 16 16 C 0.11 4.14 5.98 86.93 0.52 4.66 16 17 C -0.11 -4.50 6.24 32.06 0.20 -4.30 16 18 C 0.23 11.18 0.85 -10.35 -0.01 11.17 16 19 O -0.59 -29.26 13.08 -148.98 -1.95 -31.21 16 20 C -0.56 -28.66 8.11 25.60 0.21 -28.45 16 21 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16 22 C 0.03 1.56 5.27 84.65 0.45 2.00 16 23 N -0.91 -47.95 10.99 21.45 0.24 -47.72 16 24 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.12 5.82 5.20 86.73 0.45 6.27 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.16 7.21 -2.39 -0.02 1.14 16 32 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.03 6.26 -2.39 -0.01 1.02 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.12 6.11 -2.38 -0.01 1.11 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.15 4.56 3.91 -75.05 -0.29 4.26 16 41 H 0.08 1.92 7.64 -2.39 -0.02 1.90 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.10 3.44 6.32 -2.38 -0.02 3.43 16 44 H 0.09 3.25 8.04 -2.38 -0.02 3.23 16 45 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.38 19.26 7.54 -74.06 -0.56 18.71 16 47 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 48 H 0.05 2.61 7.81 -2.39 -0.02 2.59 16 49 H 0.05 2.41 7.89 -2.39 -0.02 2.39 16 Total: -1.00 -59.16 378.79 0.44 -58.72 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: 0.13 Total: 41.85 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 6.03 Total: 29.78 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -4.24 Total: -92.01 kcal Atomic # 8 Polarization: -77.78 SS G_CDS: -3.51 Total: -81.29 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -59.16 0.44 -58.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.818 kcal (2) G-P(sol) polarization free energy of solvation -59.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds