Wall clock time and date at job start Tue Mar 31 2020 23:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.49830 * 2 1 4 4 C 1.53193 * 109.49792 * 239.93567 * 2 1 3 5 5 N 1.46927 * 108.77799 * 294.65084 * 4 2 1 6 6 C 1.34774 * 120.62833 * 126.36785 * 5 4 2 7 7 O 1.21351 * 120.00436 * 8.53382 * 6 5 4 8 8 C 1.49449 * 119.99534 * 188.53790 * 6 5 4 9 9 O 1.21346 * 120.00372 * 5.47877 * 8 6 5 10 10 N 1.34778 * 119.99914 * 185.48590 * 8 6 5 11 11 C 1.47748 * 125.82128 * 359.90027 * 10 8 6 12 12 C 1.54912 * 104.83842 * 155.83404 * 11 10 8 13 13 C 1.55151 * 101.58603 * 37.09704 * 12 11 10 14 14 O 1.42897 * 110.72284 * 82.85902 * 13 12 11 15 15 C 1.50697 * 110.87387 * 206.06481 * 13 12 11 16 16 H 1.08002 * 119.99969 * 355.05847 * 15 13 12 17 17 C 1.37879 * 119.99873 * 175.06279 * 15 13 12 18 18 N 1.31516 * 120.00319 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99892 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47611 * 59.99421 * 19 17 15 21 21 H 1.48494 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46725 * 299.99665 * 19 17 15 23 23 C 1.47024 * 125.65111 * 180.02562 * 10 8 6 24 24 C 1.46924 * 118.73571 * 306.64364 * 5 4 2 25 25 C 1.52764 * 109.00902 * 53.30711 * 24 5 4 26 26 H 1.08998 * 109.35876 * 65.50066 * 25 24 5 27 27 C 1.52994 * 109.56308 * 185.55101 * 25 24 5 28 28 C 1.53038 * 109.38488 * 305.58589 * 25 24 5 29 29 O 1.42900 * 109.45958 * 181.25800 * 28 25 24 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47334 * 300.06305 * 1 2 3 32 32 H 1.09002 * 109.47382 * 60.06539 * 1 2 3 33 33 H 1.09002 * 109.58907 * 174.86087 * 4 2 1 34 34 H 1.09006 * 109.58611 * 54.44013 * 4 2 1 35 35 H 1.09002 * 110.28798 * 37.03163 * 11 10 8 36 36 H 1.08997 * 110.52813 * 274.75814 * 11 10 8 37 37 H 1.08996 * 111.00585 * 279.01930 * 12 11 10 38 38 H 1.09000 * 111.00067 * 155.17075 * 12 11 10 39 39 H 0.96702 * 114.00426 * 185.03180 * 14 13 12 40 40 H 0.96996 * 120.00195 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.88491 * 61.59696 * 23 10 8 42 42 H 1.09008 * 109.87897 * 300.59357 * 23 10 8 43 43 H 1.08999 * 109.58472 * 173.14520 * 24 5 4 44 44 H 1.09002 * 109.58820 * 293.56546 * 24 5 4 45 45 H 1.09004 * 109.47408 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47499 * 299.96405 * 27 25 24 47 47 H 1.09002 * 109.47524 * 59.96922 * 27 25 24 48 48 H 1.08998 * 109.45115 * 301.22700 * 28 25 24 49 49 H 0.96698 * 113.99585 * 59.93952 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 1.6522 -2.1380 -1.1699 6 6 0.9747 -2.7218 -2.1781 7 8 0.8149 -2.1293 -3.2250 8 6 0.4200 -4.0989 -2.0067 9 8 0.4923 -4.6525 -0.9293 10 7 -0.1604 -4.7262 -3.0489 11 6 -0.3190 -4.1750 -4.4105 12 6 -0.4389 -5.4163 -5.3295 13 6 -1.2634 -6.3840 -4.4402 14 8 -2.6598 -6.0978 -4.5413 15 6 -0.9872 -7.8189 -4.8086 16 1 -0.3532 -8.0472 -5.6526 17 6 -1.5438 -8.8401 -4.0681 18 7 -2.3154 -8.5621 -3.0400 19 14 -1.2007 -10.6188 -4.5243 20 1 0.2599 -10.8763 -4.4496 21 1 -1.9103 -11.5180 -3.5793 22 1 -1.6786 -10.8762 -5.9067 23 6 -0.7448 -6.0750 -3.0199 24 6 2.0105 -2.9023 0.0327 25 6 1.5043 -2.1559 1.2658 26 1 0.4146 -2.1361 1.2541 27 6 1.9894 -2.8675 2.5303 28 6 2.0415 -0.7230 1.2482 29 8 1.5930 -0.0321 2.4159 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 3.1274 -0.6454 -1.2986 34 1 1.6002 -0.2728 -2.1390 35 1 0.5553 -3.5840 -4.6833 36 1 -1.2217 -3.5673 -4.4741 37 1 0.5430 -5.8327 -5.5538 38 1 -0.9771 -5.1734 -6.2458 39 1 -3.2130 -6.6230 -3.9469 40 1 -2.7066 -9.2805 -2.5189 41 1 -1.5701 -6.1062 -2.3086 42 1 0.0160 -6.8026 -2.7368 43 1 1.5491 -3.8889 -0.0105 44 1 3.0940 -3.0056 0.0907 45 1 1.6278 -2.3335 3.4091 46 1 1.6066 -3.8880 2.5425 47 1 3.0791 -2.8881 2.5404 48 1 3.1312 -0.7440 1.2347 49 1 1.8807 -0.4354 3.2463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330451573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:08 Heat of formation + Delta-G solvation = -147.845657 kcal Electronic energy + Delta-G solvation = -31897.752656 eV Core-core repulsion = 27632.546234 eV Total energy + Delta-G solvation = -4265.206422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01713 -39.46963 -38.19257 -37.43397 -35.97276 -34.36129 -33.48523 -32.57915 -32.28100 -30.24184 -28.04768 -27.43354 -26.89726 -26.09286 -25.02096 -23.29900 -22.30306 -21.41738 -19.75564 -19.43314 -18.85185 -17.65426 -17.23632 -16.99301 -16.80617 -16.00569 -15.66676 -15.35013 -14.91485 -14.87921 -14.73935 -14.41237 -14.24385 -14.01045 -13.59093 -13.14383 -13.03421 -12.95784 -12.78832 -12.52099 -12.36210 -12.33408 -12.24832 -11.81916 -11.71873 -11.62422 -11.54768 -11.44732 -11.09563 -10.94610 -10.91081 -10.71863 -10.64065 -10.54281 -10.48466 -10.20960 -9.92397 -9.35317 -8.89940 -8.76115 -8.63585 -8.37219 -8.10655 -6.33726 -4.42451 1.68737 2.50029 3.19767 3.25455 3.27560 3.47127 3.65797 3.93899 4.22868 4.33938 4.48142 4.56111 4.71440 4.82440 4.92482 4.94443 5.15938 5.25177 5.32897 5.40517 5.42297 5.44963 5.50958 5.64555 5.68691 5.76506 5.81394 5.83813 5.90218 5.97386 5.98619 6.05038 6.09343 6.24090 6.28174 6.38036 6.47386 6.71779 6.77990 6.81940 7.11735 7.16072 7.27497 7.38570 7.67409 7.74500 7.97458 8.00492 8.35772 8.61370 9.24172 9.33131 10.74063 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002981 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.482610 B = 9389.901885 C =10181.089996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.114 3.886 5 N -0.585 5.585 6 C 0.513 3.487 7 O -0.517 6.517 8 C 0.509 3.491 9 O -0.527 6.527 10 N -0.570 5.570 11 C 0.101 3.899 12 C -0.121 4.121 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.099 3.901 24 C 0.055 3.945 25 C -0.136 4.136 26 H 0.087 0.913 27 C -0.149 4.149 28 C 0.113 3.887 29 O -0.564 6.564 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.382 0.618 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.165 0.835 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.158 13.692 8.530 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.008 4.008 5 N -0.319 5.319 6 C 0.297 3.703 7 O -0.392 6.392 8 C 0.292 3.708 9 O -0.408 6.408 10 N -0.301 5.301 11 C -0.021 4.021 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.022 4.022 24 C -0.066 4.066 25 C -0.156 4.156 26 H 0.105 0.895 27 C -0.207 4.207 28 C 0.054 3.946 29 O -0.371 6.371 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.232 0.768 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.181 0.819 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.955 14.469 7.787 18.713 hybrid contribution 0.313 -1.648 0.886 1.897 sum 9.268 12.821 8.673 18.041 Atomic orbital electron populations 1.21773 0.93978 1.02390 1.01879 1.21469 0.97749 0.99648 0.92766 0.89398 1.21741 0.99821 0.80536 0.98743 1.47876 1.54539 1.11082 1.18395 1.20272 0.78779 0.87615 0.83666 1.90700 1.57583 1.65067 1.25896 1.19623 0.80750 0.86241 0.84168 1.90247 1.58879 1.66897 1.24818 1.48834 1.52779 1.18339 1.10137 1.22684 1.02166 0.96778 0.80520 1.22826 1.00465 0.94461 0.98145 1.19510 0.79694 0.92423 0.87575 1.86135 1.18786 1.67151 1.67078 1.21464 1.31359 0.89895 1.14872 0.91445 1.25077 0.94011 1.00016 0.94142 1.69678 1.31923 1.33744 1.18024 0.86442 0.78617 0.83266 0.78488 1.20014 1.21065 1.19949 1.23274 0.98027 0.78578 1.02300 1.23226 1.00776 1.00940 0.81685 1.22105 1.02664 0.95059 0.95740 0.89492 1.21765 1.01035 1.01537 0.96313 1.21845 0.96584 0.90595 0.85540 1.86493 1.79033 1.55605 1.15929 0.92378 0.91795 0.92754 0.91079 0.88237 0.89792 0.91087 0.90420 0.90216 0.76776 0.91881 0.90937 0.90762 0.81923 0.92096 0.92390 0.91282 0.92566 0.92808 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.57 37.15 0.32 -1.32 16 2 C -0.10 -0.98 2.94 -90.50 -0.27 -1.25 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.11 1.25 5.80 -3.71 -0.02 1.23 16 5 N -0.59 -7.91 2.42 -173.53 -0.42 -8.33 16 6 C 0.51 8.60 7.69 -11.59 -0.09 8.51 16 7 O -0.52 -9.22 13.34 5.50 0.07 -9.15 16 8 C 0.51 9.78 7.81 -11.59 -0.09 9.68 16 9 O -0.53 -10.55 13.43 5.50 0.07 -10.48 16 10 N -0.57 -11.69 3.34 -170.76 -0.57 -12.26 16 11 C 0.10 1.91 6.00 -2.35 -0.01 1.89 16 12 C -0.12 -2.43 6.23 -24.58 -0.15 -2.58 16 13 C 0.25 5.87 0.85 -89.94 -0.08 5.80 16 14 O -0.58 -14.37 13.07 -35.23 -0.46 -14.84 16 15 C -0.54 -13.69 8.13 -34.44 -0.28 -13.97 16 16 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 18 N -0.90 -23.09 10.96 55.43 0.61 -22.48 16 19 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.10 2.30 5.23 -3.06 -0.02 2.28 16 24 C 0.05 0.68 5.52 -3.93 -0.02 0.65 16 25 C -0.14 -1.43 2.27 -90.72 -0.21 -1.63 16 26 H 0.09 1.10 6.34 -51.93 -0.33 0.77 16 27 C -0.15 -1.24 8.86 37.15 0.33 -0.91 16 28 C 0.11 1.07 2.63 -26.69 -0.07 1.00 16 29 O -0.56 -5.31 12.66 -35.23 -0.45 -5.75 16 30 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 31 H 0.06 0.73 7.73 -51.93 -0.40 0.33 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 35 H 0.08 1.49 6.33 -51.93 -0.33 1.16 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.38 9.57 7.45 45.56 0.34 9.91 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.07 1.82 7.91 -51.93 -0.41 1.40 16 42 H 0.07 1.85 7.81 -51.92 -0.41 1.44 16 43 H 0.16 2.48 3.80 -56.68 -0.22 2.27 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.39 6.76 -51.93 -0.35 0.04 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.37 2.25 7.33 45.56 0.33 2.58 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -28.06 375.80 -7.46 -35.52 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -6.21 Total: 16.07 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.75 Total: 11.08 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.38 Total: -43.07 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.76 Total: -40.21 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.06 -7.46 -35.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330451573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.321 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds