Wall clock time and date at job start Tue Mar 31 2020 23:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.49830 * 2 1 4 4 C 1.53193 * 109.49792 * 239.93567 * 2 1 3 5 5 N 1.46927 * 108.77799 * 294.65084 * 4 2 1 6 6 C 1.34774 * 120.62833 * 126.36785 * 5 4 2 7 7 O 1.21351 * 120.00436 * 8.53382 * 6 5 4 8 8 C 1.49449 * 119.99534 * 188.53790 * 6 5 4 9 9 O 1.21346 * 120.00372 * 5.47877 * 8 6 5 10 10 N 1.34778 * 119.99914 * 185.48590 * 8 6 5 11 11 C 1.47748 * 125.82128 * 359.90027 * 10 8 6 12 12 C 1.54912 * 104.83842 * 155.83404 * 11 10 8 13 13 C 1.55151 * 101.58603 * 37.09704 * 12 11 10 14 14 O 1.42897 * 110.72284 * 82.85902 * 13 12 11 15 15 C 1.50697 * 110.87387 * 206.06481 * 13 12 11 16 16 H 1.08002 * 119.99969 * 355.05847 * 15 13 12 17 17 C 1.37879 * 119.99873 * 175.06279 * 15 13 12 18 18 N 1.31516 * 120.00319 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99892 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47611 * 59.99421 * 19 17 15 21 21 H 1.48494 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46725 * 299.99665 * 19 17 15 23 23 C 1.47024 * 125.65111 * 180.02562 * 10 8 6 24 24 C 1.46924 * 118.73571 * 306.64364 * 5 4 2 25 25 C 1.52764 * 109.00902 * 53.30711 * 24 5 4 26 26 H 1.08998 * 109.35876 * 65.50066 * 25 24 5 27 27 C 1.52994 * 109.56308 * 185.55101 * 25 24 5 28 28 C 1.53038 * 109.38488 * 305.58589 * 25 24 5 29 29 O 1.42900 * 109.45958 * 181.25800 * 28 25 24 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47334 * 300.06305 * 1 2 3 32 32 H 1.09002 * 109.47382 * 60.06539 * 1 2 3 33 33 H 1.09002 * 109.58907 * 174.86087 * 4 2 1 34 34 H 1.09006 * 109.58611 * 54.44013 * 4 2 1 35 35 H 1.09002 * 110.28798 * 37.03163 * 11 10 8 36 36 H 1.08997 * 110.52813 * 274.75814 * 11 10 8 37 37 H 1.08996 * 111.00585 * 279.01930 * 12 11 10 38 38 H 1.09000 * 111.00067 * 155.17075 * 12 11 10 39 39 H 0.96702 * 114.00426 * 185.03180 * 14 13 12 40 40 H 0.96996 * 120.00195 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.88491 * 61.59696 * 23 10 8 42 42 H 1.09008 * 109.87897 * 300.59357 * 23 10 8 43 43 H 1.08999 * 109.58472 * 173.14520 * 24 5 4 44 44 H 1.09002 * 109.58820 * 293.56546 * 24 5 4 45 45 H 1.09004 * 109.47408 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47499 * 299.96405 * 27 25 24 47 47 H 1.09002 * 109.47524 * 59.96922 * 27 25 24 48 48 H 1.08998 * 109.45115 * 301.22700 * 28 25 24 49 49 H 0.96698 * 113.99585 * 59.93952 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 1.6522 -2.1380 -1.1699 6 6 0.9747 -2.7218 -2.1781 7 8 0.8149 -2.1293 -3.2250 8 6 0.4200 -4.0989 -2.0067 9 8 0.4923 -4.6525 -0.9293 10 7 -0.1604 -4.7262 -3.0489 11 6 -0.3190 -4.1750 -4.4105 12 6 -0.4389 -5.4163 -5.3295 13 6 -1.2634 -6.3840 -4.4402 14 8 -2.6598 -6.0978 -4.5413 15 6 -0.9872 -7.8189 -4.8086 16 1 -0.3532 -8.0472 -5.6526 17 6 -1.5438 -8.8401 -4.0681 18 7 -2.3154 -8.5621 -3.0400 19 14 -1.2007 -10.6188 -4.5243 20 1 0.2599 -10.8763 -4.4496 21 1 -1.9103 -11.5180 -3.5793 22 1 -1.6786 -10.8762 -5.9067 23 6 -0.7448 -6.0750 -3.0199 24 6 2.0105 -2.9023 0.0327 25 6 1.5043 -2.1559 1.2658 26 1 0.4146 -2.1361 1.2541 27 6 1.9894 -2.8675 2.5303 28 6 2.0415 -0.7230 1.2482 29 8 1.5930 -0.0321 2.4159 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 3.1274 -0.6454 -1.2986 34 1 1.6002 -0.2728 -2.1390 35 1 0.5553 -3.5840 -4.6833 36 1 -1.2217 -3.5673 -4.4741 37 1 0.5430 -5.8327 -5.5538 38 1 -0.9771 -5.1734 -6.2458 39 1 -3.2130 -6.6230 -3.9469 40 1 -2.7066 -9.2805 -2.5189 41 1 -1.5701 -6.1062 -2.3086 42 1 0.0160 -6.8026 -2.7368 43 1 1.5491 -3.8889 -0.0105 44 1 3.0940 -3.0056 0.0907 45 1 1.6278 -2.3335 3.4091 46 1 1.6066 -3.8880 2.5425 47 1 3.0791 -2.8881 2.5404 48 1 3.1312 -0.7440 1.2347 49 1 1.8807 -0.4354 3.2463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330451573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:07 Heat of formation + Delta-G solvation = -169.124223 kcal Electronic energy + Delta-G solvation = -31898.675364 eV Core-core repulsion = 27632.546234 eV Total energy + Delta-G solvation = -4266.129130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27177 -40.72888 -39.49416 -39.04688 -36.99253 -36.04729 -34.35324 -34.24749 -33.54262 -31.93228 -29.77433 -28.55401 -27.80284 -27.49498 -26.35790 -24.74781 -23.53960 -22.48178 -21.50278 -20.76846 -19.84133 -19.13818 -18.46932 -18.32186 -18.11779 -17.47626 -17.07170 -17.02362 -16.34446 -16.14650 -15.70186 -15.56313 -15.45470 -15.08959 -14.85472 -14.82100 -14.76431 -14.46552 -14.02069 -13.73296 -13.54836 -13.42544 -13.37528 -13.21433 -13.09086 -12.84892 -12.62832 -12.59006 -12.54477 -12.36905 -12.31358 -12.27933 -12.17859 -11.89772 -11.77921 -11.33858 -11.17260 -10.81966 -10.65212 -10.37301 -10.08066 -9.87762 -9.72569 -8.27264 -6.43197 0.26394 1.18115 1.44257 1.45014 1.52725 2.03776 2.29305 2.39644 2.98391 3.05273 3.23404 3.59309 3.70465 3.76985 3.85370 4.00978 4.05554 4.11117 4.12955 4.29750 4.32475 4.42144 4.52894 4.58681 4.61010 4.61779 4.64154 4.69628 4.84003 4.89897 4.94197 4.98702 5.01870 5.03030 5.06615 5.14418 5.19448 5.29702 5.30247 5.38129 5.39907 5.48204 5.71829 5.93067 6.03116 6.28664 6.57591 6.65892 6.85528 6.86770 7.25955 7.34026 8.78887 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002981 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.482610 B = 9389.901885 C =10181.089996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.574 5.574 6 C 0.516 3.484 7 O -0.531 6.531 8 C 0.503 3.497 9 O -0.541 6.541 10 N -0.581 5.581 11 C 0.111 3.889 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.068 0.932 17 C 0.029 3.971 18 N -0.914 5.914 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.119 3.881 24 C 0.052 3.948 25 C -0.131 4.131 26 H 0.058 0.942 27 C -0.146 4.146 28 C 0.120 3.880 29 O -0.575 6.575 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 15.127 9.028 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.127 0.873 4 C -0.009 4.009 5 N -0.306 5.306 6 C 0.298 3.702 7 O -0.408 6.408 8 C 0.287 3.713 9 O -0.422 6.422 10 N -0.313 5.313 11 C -0.011 4.011 12 C -0.152 4.152 13 C 0.194 3.806 14 O -0.396 6.396 15 C -0.596 4.596 16 H 0.086 0.914 17 C -0.172 4.172 18 N -0.553 5.553 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.003 4.003 24 C -0.068 4.068 25 C -0.151 4.151 26 H 0.077 0.923 27 C -0.203 4.203 28 C 0.061 3.939 29 O -0.384 6.384 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.151 0.849 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.190 15.936 8.322 21.176 hybrid contribution -0.369 -2.052 0.854 2.254 sum 10.822 13.883 9.177 19.851 Atomic orbital electron populations 1.21723 0.95498 1.00673 1.01800 1.21494 0.96378 1.00759 0.92803 0.87317 1.21991 1.01544 0.78348 0.98991 1.47969 1.52725 1.12256 1.17640 1.19733 0.79586 0.86390 0.84510 1.90685 1.58694 1.64915 1.26550 1.20298 0.80082 0.87354 0.83554 1.90300 1.58930 1.67742 1.25238 1.48866 1.53544 1.17570 1.11297 1.22651 1.02776 0.96195 0.79429 1.22824 1.00300 0.93926 0.98163 1.19713 0.79433 0.92933 0.88541 1.86125 1.19453 1.67043 1.66934 1.21761 1.31656 0.91107 1.15089 0.91391 1.25786 0.93849 1.03549 0.94052 1.69782 1.32376 1.34580 1.18568 0.85518 0.78466 0.78952 0.78175 1.19623 1.20908 1.19568 1.22752 0.96271 0.79822 1.01444 1.23171 1.01981 0.99677 0.82003 1.22034 1.00987 0.96310 0.95736 0.92328 1.21754 1.02221 1.00486 0.95851 1.21772 0.97599 0.89138 0.85385 1.86465 1.79414 1.55793 1.16679 0.94876 0.91832 0.92869 0.88076 0.88950 0.88073 0.91404 0.89469 0.89107 0.77451 0.91948 0.93810 0.93212 0.84860 0.89534 0.90534 0.92980 0.90619 0.90474 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 71.98 0.62 -2.47 16 2 C -0.10 -1.67 2.94 -10.72 -0.03 -1.70 16 3 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 4 C 0.11 2.16 5.80 86.36 0.50 2.66 16 5 N -0.57 -14.74 2.42 -821.30 -1.99 -16.72 16 6 C 0.52 17.08 7.69 87.27 0.67 17.75 16 7 O -0.53 -18.53 13.34 -3.25 -0.04 -18.57 16 8 C 0.50 19.77 7.81 87.27 0.68 20.45 16 9 O -0.54 -22.49 13.43 -3.23 -0.04 -22.53 16 10 N -0.58 -24.45 3.34 -812.52 -2.71 -27.16 16 11 C 0.11 4.19 6.00 86.79 0.52 4.71 16 12 C -0.11 -4.56 6.23 31.99 0.20 -4.36 16 13 C 0.23 11.31 0.85 -10.35 -0.01 11.30 16 14 O -0.59 -29.76 13.07 -148.98 -1.95 -31.71 16 15 C -0.56 -28.82 8.13 25.60 0.21 -28.61 16 16 H 0.07 3.42 7.78 -2.91 -0.02 3.39 16 17 C 0.03 1.48 5.28 84.65 0.45 1.93 16 18 N -0.91 -48.44 10.96 21.45 0.24 -48.20 16 19 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.12 5.78 5.23 86.73 0.45 6.23 16 24 C 0.05 1.23 5.52 86.22 0.48 1.70 16 25 C -0.13 -2.54 2.27 -10.86 -0.02 -2.57 16 26 H 0.06 1.48 6.34 -2.39 -0.02 1.47 16 27 C -0.15 -2.12 8.86 71.98 0.64 -1.49 16 28 C 0.12 1.88 2.63 30.62 0.08 1.96 16 29 O -0.57 -9.01 12.66 -148.98 -1.89 -10.89 16 30 H 0.03 0.88 5.97 -2.39 -0.01 0.87 16 31 H 0.06 1.38 7.73 -2.39 -0.02 1.37 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.97 7.07 -2.38 -0.02 1.96 16 35 H 0.10 3.50 6.33 -2.39 -0.02 3.48 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.09 3.28 8.04 -2.39 -0.02 3.27 16 38 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.38 19.63 7.45 -74.06 -0.55 19.08 16 40 H 0.27 13.80 8.31 -92.71 -0.77 13.02 16 41 H 0.04 2.32 7.91 -2.39 -0.02 2.30 16 42 H 0.05 2.60 7.81 -2.38 -0.02 2.58 16 43 H 0.13 4.10 3.80 -77.55 -0.30 3.81 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 0.83 6.76 -2.39 -0.02 0.81 16 46 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.39 3.33 7.33 -74.06 -0.54 2.79 16 Total: -1.00 -61.85 375.80 -1.32 -63.16 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.39 Total: 41.94 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 5.43 Total: 27.51 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.46 Total: -92.08 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -3.92 Total: -83.71 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -61.85 -1.32 -63.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330451573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.960 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds