Wall clock time and date at job start Tue Mar 31 2020 23:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46787 * 2 1 4 4 C 1.52995 * 109.46946 * 119.99867 * 2 1 3 5 5 C 1.53002 * 109.47001 * 185.00195 * 4 2 1 6 6 C 1.53002 * 109.47417 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47157 * 180.02562 * 6 5 4 8 8 C 1.36942 * 119.99761 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00048 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99632 * 179.97438 * 8 7 6 11 11 N 1.31623 * 120.00411 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99804 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46807 * 90.00239 * 12 10 8 14 14 H 1.48501 * 109.47272 * 210.00390 * 12 10 8 15 15 H 1.48504 * 109.47240 * 330.00492 * 12 10 8 16 16 N 1.46503 * 109.47144 * 240.00279 * 2 1 3 17 17 C 1.34772 * 120.00135 * 84.99759 * 16 2 1 18 18 O 1.21287 * 119.99911 * 359.97438 * 17 16 2 19 19 C 1.50699 * 120.00038 * 179.97438 * 17 16 2 20 20 H 1.08996 * 109.47508 * 300.00243 * 19 17 16 21 21 C 1.53004 * 109.46813 * 60.00550 * 19 17 16 22 22 C 1.50698 * 109.47065 * 180.02562 * 19 17 16 23 23 C 1.38415 * 120.02708 * 120.00406 * 22 19 17 24 24 F 1.35100 * 120.00946 * 359.95724 * 23 22 19 25 25 C 1.38474 * 119.97981 * 179.97438 * 23 22 19 26 26 C 1.38210 * 120.02023 * 0.28104 * 25 23 22 27 27 C 1.38201 * 120.05118 * 359.44081 * 26 25 23 28 28 C 1.38420 * 120.02535 * 299.97914 * 22 19 17 29 29 F 1.35097 * 120.01373 * 0.02562 * 28 22 19 30 30 H 1.09000 * 109.47214 * 299.99660 * 1 2 3 31 31 H 1.08998 * 109.47154 * 60.00043 * 1 2 3 32 32 H 1.09002 * 109.46394 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47536 * 305.00298 * 4 2 1 34 34 H 1.09003 * 109.47223 * 65.00595 * 4 2 1 35 35 H 1.09004 * 109.47415 * 300.00593 * 5 4 2 36 36 H 1.09007 * 109.47207 * 59.99860 * 5 4 2 37 37 H 1.08997 * 109.46667 * 300.00144 * 6 5 4 38 38 H 1.08998 * 109.46704 * 60.00048 * 6 5 4 39 39 H 0.97004 * 120.00371 * 359.97438 * 7 6 5 40 40 H 0.96996 * 119.99928 * 180.02562 * 11 10 8 41 41 H 0.96999 * 119.99891 * 264.99652 * 16 2 1 42 42 H 1.09001 * 109.46748 * 299.99708 * 21 19 17 43 43 H 1.08996 * 109.47333 * 59.99586 * 21 19 17 44 44 H 1.09000 * 109.47040 * 180.02562 * 21 19 17 45 45 H 1.08002 * 119.98641 * 179.97438 * 25 23 22 46 46 H 1.08000 * 119.96986 * 179.70463 * 26 25 23 47 47 H 1.08002 * 119.98829 * 180.25980 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0750 -1.3350 2.5626 7 7 5.5349 -1.2310 2.6246 8 6 6.2187 -1.8051 3.6630 9 1 5.6818 -2.3348 4.4358 10 6 7.6022 -1.7070 3.7214 11 7 8.2567 -1.0618 2.7792 12 14 8.5349 -2.4895 5.1381 13 1 8.8972 -3.8848 4.7815 14 1 9.7702 -1.7107 5.4077 15 1 7.6787 -2.4952 6.3514 16 7 2.0184 -0.6906 -1.1962 17 6 2.1471 -0.0182 -2.3572 18 8 1.8582 1.1585 -2.4117 19 6 2.6500 -0.7284 -3.5875 20 1 3.6493 -1.1202 -3.3980 21 6 1.7063 -1.8827 -3.9315 22 6 2.7011 0.2400 -4.7409 23 6 3.9041 0.5001 -5.3742 24 9 5.0334 -0.1136 -4.9579 25 6 3.9499 1.3898 -6.4343 26 6 2.7958 2.0225 -6.8564 27 6 1.5931 1.7592 -6.2286 28 6 1.5449 0.8699 -5.1683 29 9 0.3701 0.6170 -4.5512 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6054 -0.2618 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9996 -1.0726 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7867 -2.3852 2.5185 39 1 6.0173 -0.7555 1.9302 40 1 9.2234 -0.9937 2.8199 41 1 2.2492 -1.6317 -1.1527 42 1 1.6698 -2.5830 -3.0971 43 1 0.7070 -1.4909 -4.1210 44 1 2.0703 -2.3967 -4.8211 45 1 4.8886 1.5932 -6.9282 46 1 2.8333 2.7198 -7.6802 47 1 0.6912 2.2510 -6.5620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330866261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:06 Heat of formation + Delta-G solvation = -129.857960 kcal Electronic energy + Delta-G solvation = -29644.212020 eV Core-core repulsion = 25268.698088 eV Total energy + Delta-G solvation = -4375.513932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.08997 -50.00472 -41.26006 -39.67079 -38.00058 -36.52854 -35.45282 -34.15566 -32.51692 -31.26440 -30.97501 -30.23110 -27.25220 -25.96442 -24.86777 -23.91229 -23.68145 -22.40180 -21.80193 -21.22426 -19.16836 -19.13556 -18.80627 -17.80281 -17.58466 -16.91186 -16.73683 -16.61772 -16.54224 -16.34296 -16.11079 -15.86965 -15.45642 -15.39925 -15.28777 -15.03359 -14.78169 -14.42531 -14.04528 -13.78212 -13.51735 -13.45470 -13.31294 -13.17681 -13.10728 -13.03496 -12.89151 -12.78100 -12.52566 -12.40480 -12.25288 -12.10065 -11.96356 -11.86551 -11.73026 -11.51173 -10.94691 -10.87729 -10.09703 -9.90336 -9.72872 -9.02402 -7.96928 -5.26716 -0.05372 0.00212 1.45869 1.48356 1.56900 1.57839 2.10266 2.44586 2.54751 2.90404 3.23466 3.36631 3.40986 3.54177 3.62645 3.85358 3.89146 3.97534 4.04516 4.08783 4.20654 4.23138 4.28250 4.38446 4.56894 4.63736 4.66421 4.72688 4.80625 4.83455 4.84535 4.87341 4.90876 4.98361 5.02448 5.05300 5.10889 5.15160 5.19925 5.29750 5.35610 5.40997 5.48765 5.56785 5.78238 6.25412 6.50358 7.19869 7.30684 8.07694 8.29793 9.26939 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.002455 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.297722 B =11400.256481 C =12918.462860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.284 1.284 14 H -0.295 1.295 15 H -0.268 1.268 16 N -0.710 5.710 17 C 0.519 3.481 18 O -0.571 6.571 19 C -0.074 4.074 20 H 0.114 0.886 21 C -0.139 4.139 22 C -0.158 4.158 23 C 0.110 3.890 24 F -0.140 7.140 25 C -0.165 4.165 26 C -0.051 4.051 27 C -0.168 4.168 28 C 0.136 3.864 29 F -0.136 7.136 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.020 0.980 38 H 0.027 0.973 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.412 0.588 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.165 0.835 46 H 0.183 0.817 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.910 1.822 -22.270 29.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.193 1.193 16 N -0.362 5.362 17 C 0.305 3.695 18 O -0.450 6.450 19 C -0.096 4.096 20 H 0.132 0.868 21 C -0.196 4.196 22 C -0.160 4.160 23 C 0.091 3.909 24 F -0.119 7.119 25 C -0.183 4.183 26 C -0.068 4.068 27 C -0.187 4.187 28 C 0.117 3.883 29 F -0.114 7.114 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.183 0.817 46 H 0.200 0.800 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.138 2.518 -22.057 29.311 hybrid contribution 1.303 -0.597 0.900 1.692 sum -17.835 1.922 -21.157 27.738 Atomic orbital electron populations 1.22074 0.93744 1.03047 1.02169 1.20965 0.94805 0.96384 0.83832 0.92098 1.21747 0.93472 1.02314 0.97103 1.21594 0.96560 0.99585 0.97363 1.20853 0.83146 0.97438 0.96126 1.42671 1.02580 1.65909 1.28229 1.19683 0.90040 1.26376 1.01809 0.90433 1.25652 0.97554 1.02430 1.01524 1.69835 1.07086 1.48796 1.36582 0.85088 0.77820 0.77518 0.79027 1.21131 1.22202 1.19266 1.45992 1.66640 1.14595 1.08993 1.20636 0.76837 0.86869 0.85145 1.90676 1.51423 1.17433 1.85518 1.20223 1.03610 0.95883 0.89859 0.86789 1.21843 0.98293 0.95454 1.04056 1.19496 0.92638 1.03435 1.00434 1.17525 0.80932 0.95872 0.96586 1.91504 1.49210 1.81468 1.89689 1.21545 1.02305 0.97564 0.96931 1.21303 0.89387 0.97172 0.98954 1.21567 1.01810 0.99175 0.96140 1.17384 0.80403 0.97354 0.93186 1.91462 1.45203 1.92690 1.82042 0.90350 0.94015 0.90745 0.89074 0.89177 0.92499 0.93800 0.96221 0.95502 0.79770 0.93986 0.75147 0.89430 0.91887 0.89965 0.81738 0.79967 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.14 3.34 2.57 44.99 0.12 3.46 16 3 H 0.06 1.77 7.58 -2.38 -0.02 1.75 16 4 C -0.11 -2.41 4.75 30.59 0.15 -2.27 16 5 C -0.11 -3.60 5.22 30.60 0.16 -3.44 16 6 C 0.15 6.00 6.26 86.38 0.54 6.54 16 7 N -0.75 -39.64 5.60 -343.46 -1.92 -41.56 16 8 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 9 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 10 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 11 N -0.97 -61.21 13.06 21.65 0.28 -60.92 16 12 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 N -0.71 -15.93 4.42 -442.52 -1.96 -17.89 16 17 C 0.52 13.95 6.56 87.66 0.58 14.53 16 18 O -0.57 -19.64 14.22 -3.05 -0.04 -19.69 16 19 C -0.07 -1.65 2.79 -12.29 -0.03 -1.69 16 20 H 0.11 2.49 7.13 -2.39 -0.02 2.48 16 21 C -0.14 -2.23 8.88 71.98 0.64 -1.59 16 22 C -0.16 -3.67 4.41 -19.78 -0.09 -3.76 16 23 C 0.11 2.42 7.25 22.37 0.16 2.58 16 24 F -0.14 -3.46 16.19 44.97 0.73 -2.74 16 25 C -0.16 -2.54 10.03 22.32 0.22 -2.31 16 26 C -0.05 -0.59 10.04 22.25 0.22 -0.37 16 27 C -0.17 -2.63 10.02 22.32 0.22 -2.41 16 28 C 0.14 3.03 6.13 22.37 0.14 3.16 16 29 F -0.14 -3.38 13.81 44.97 0.62 -2.76 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.85 7.75 -2.38 -0.02 1.83 16 36 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 40 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.41 7.27 8.02 -92.71 -0.74 6.52 16 42 H 0.09 1.07 7.56 -2.39 -0.02 1.05 16 43 H 0.06 1.11 6.31 -2.39 -0.02 1.10 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 46 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 47 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -76.78 393.68 4.29 -72.49 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.46 Total: 31.61 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.01 Total: -7.39 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -3.60 Total: -120.38 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.35 Total: -5.49 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.78 4.29 -72.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330866261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.366 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds