Wall clock time and date at job start Tue Mar 31 2020 23:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47483 * 2 1 4 4 C 1.52997 * 109.47083 * 239.99588 * 2 1 3 5 5 C 1.52997 * 109.47183 * 174.99845 * 4 2 1 6 6 C 1.53004 * 109.47403 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.47200 * 180.02562 * 6 5 4 8 8 C 1.36928 * 120.00035 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99977 * 0.02562 * 8 7 6 10 10 C 1.38808 * 120.00377 * 180.02562 * 8 7 6 11 11 N 1.31625 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00341 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47297 * 90.00233 * 12 10 8 14 14 H 1.48504 * 109.47271 * 210.00227 * 12 10 8 15 15 H 1.48503 * 109.47311 * 329.99998 * 12 10 8 16 16 N 1.46499 * 109.46818 * 120.00024 * 2 1 3 17 17 C 1.34780 * 119.99954 * 274.99818 * 16 2 1 18 18 O 1.21281 * 119.99893 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99876 * 180.02562 * 17 16 2 20 20 H 1.08994 * 109.47378 * 60.00321 * 19 17 16 21 21 C 1.53002 * 109.47058 * 299.99550 * 19 17 16 22 22 C 1.50702 * 109.47009 * 179.97438 * 19 17 16 23 23 C 1.38235 * 119.98461 * 59.99854 * 22 19 17 24 24 C 1.38189 * 120.04785 * 179.97438 * 23 22 19 25 25 C 1.38494 * 120.02436 * 359.97438 * 24 23 22 26 26 F 1.35097 * 120.01197 * 180.02562 * 25 24 23 27 27 C 1.38397 * 119.97676 * 0.02562 * 25 24 23 28 28 C 1.38445 * 119.95016 * 359.97438 * 27 25 24 29 29 F 1.35094 * 120.01071 * 180.02562 * 28 27 25 30 30 H 1.09004 * 109.47503 * 300.00331 * 1 2 3 31 31 H 1.09004 * 109.47226 * 59.99810 * 1 2 3 32 32 H 1.09003 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47609 * 295.00372 * 4 2 1 34 34 H 1.09004 * 109.47067 * 55.00888 * 4 2 1 35 35 H 1.08993 * 109.47767 * 300.00565 * 5 4 2 36 36 H 1.09013 * 109.46853 * 60.00481 * 5 4 2 37 37 H 1.08995 * 109.47596 * 300.00653 * 6 5 4 38 38 H 1.08999 * 109.46408 * 60.00472 * 6 5 4 39 39 H 0.97005 * 119.99826 * 0.02562 * 7 6 5 40 40 H 0.96991 * 120.00126 * 180.02562 * 11 10 8 41 41 H 0.96996 * 120.00436 * 95.00025 * 16 2 1 42 42 H 1.08994 * 109.47655 * 300.00601 * 21 19 17 43 43 H 1.09003 * 109.46757 * 60.00253 * 21 19 17 44 44 H 1.09004 * 109.47006 * 179.97438 * 21 19 17 45 45 H 1.07993 * 119.97781 * 359.72371 * 23 22 19 46 46 H 1.07993 * 119.98897 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.02707 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0749 -1.3352 -2.5625 7 7 5.5350 -1.2323 -2.6239 8 6 6.2187 -1.8067 -3.6619 9 1 5.6816 -2.3352 -4.4357 10 6 7.6022 -1.7097 -3.7199 11 7 8.2569 -1.0660 -2.7767 12 14 8.5350 -2.4926 -5.1364 13 1 8.6683 -1.5119 -6.2435 14 1 9.8850 -2.9030 -4.6734 15 1 7.7933 -3.6855 -5.6183 16 7 2.0182 -0.6906 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8581 1.1584 2.4117 19 6 2.6498 -0.7285 3.5875 20 1 3.6490 -1.1203 3.3980 21 6 1.7061 -1.8827 3.9315 22 6 2.7009 0.2399 4.7410 23 6 1.5459 0.8689 5.1668 24 6 1.5913 1.7568 6.2247 25 6 2.7941 2.0171 6.8599 26 9 2.8381 2.8847 7.8944 27 6 3.9511 1.3880 6.4344 28 6 3.9045 0.4986 5.3745 29 9 5.0330 -0.1166 4.9585 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2055 34 1 1.6054 -0.2617 -2.1370 35 1 3.8532 0.4368 -1.3573 36 1 3.9994 -1.0729 -0.4258 37 1 3.7865 -2.3854 -2.5185 38 1 3.6402 -0.8761 -3.4504 39 1 6.0173 -0.7573 -1.9292 40 1 9.2236 -0.9979 -2.8174 41 1 2.2489 -1.6318 1.1527 42 1 0.7068 -1.4909 4.1210 43 1 1.6695 -2.5831 3.0971 44 1 2.0700 -2.3968 4.8212 45 1 0.6082 0.6693 4.6697 46 1 0.6885 2.2479 6.5563 47 1 4.8896 1.5906 6.9289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330987631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:18 Heat of formation + Delta-G solvation = -132.011919 kcal Electronic energy + Delta-G solvation = -29070.353417 eV Core-core repulsion = 24694.746082 eV Total energy + Delta-G solvation = -4375.607335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.12686 -50.05108 -41.37404 -39.71063 -37.93429 -36.49562 -35.25847 -34.12007 -32.45767 -31.83220 -30.86415 -29.89452 -27.22527 -25.88535 -24.84860 -24.25251 -23.52369 -22.36913 -21.73719 -21.09821 -19.32659 -19.13422 -18.61556 -17.82513 -17.57657 -17.01843 -16.79471 -16.63581 -16.48370 -16.37268 -16.08319 -15.75913 -15.53920 -15.39076 -15.26835 -15.02454 -14.79700 -14.40494 -14.05351 -13.83745 -13.66847 -13.45763 -13.31432 -13.18500 -13.00977 -12.96968 -12.77847 -12.76306 -12.38034 -12.29037 -12.22621 -12.16743 -12.04703 -11.84959 -11.70863 -11.47513 -10.93976 -10.78070 -10.09438 -10.03306 -9.68281 -9.01457 -7.96415 -5.25948 -0.14671 -0.01343 1.46327 1.48677 1.57165 1.63230 2.09641 2.44694 2.55251 2.80446 3.27021 3.37274 3.41187 3.50992 3.64282 3.78441 3.92088 4.01156 4.08908 4.11662 4.13837 4.26748 4.31868 4.43271 4.60177 4.67066 4.70752 4.76995 4.84556 4.84919 4.85884 4.87719 4.90975 4.96074 5.01897 5.03479 5.14756 5.19785 5.26706 5.35124 5.39030 5.43625 5.50252 5.61817 5.70926 6.26049 6.57344 7.25918 7.31374 8.08920 8.30550 9.27426 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.002279 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.832383 B =12285.732012 C =13819.391690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.266 1.266 16 N -0.710 5.710 17 C 0.520 3.480 18 O -0.571 6.571 19 C -0.073 4.073 20 H 0.109 0.891 21 C -0.135 4.135 22 C -0.115 4.115 23 C -0.031 4.031 24 C -0.157 4.157 25 C 0.118 3.882 26 F -0.136 7.136 27 C -0.198 4.198 28 C 0.116 3.884 29 F -0.138 7.138 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.412 0.588 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.154 0.846 46 H 0.166 0.834 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 -0.186 19.643 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.362 5.362 17 C 0.306 3.694 18 O -0.450 6.450 19 C -0.095 4.095 20 H 0.127 0.873 21 C -0.192 4.192 22 C -0.117 4.117 23 C -0.049 4.049 24 C -0.176 4.176 25 C 0.099 3.901 26 F -0.115 7.115 27 C -0.217 4.217 28 C 0.097 3.903 29 F -0.116 7.116 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.172 0.828 46 H 0.183 0.817 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.255 0.541 19.513 28.859 hybrid contribution 1.845 -0.138 -0.376 1.888 sum -19.411 0.402 19.137 27.261 Atomic orbital electron populations 1.22075 0.93483 1.03131 1.02349 1.20954 0.94963 0.96339 0.83789 0.92092 1.21755 0.93315 1.02377 0.97314 1.21598 0.96717 0.99510 0.97298 1.20869 0.83078 0.97471 0.96227 1.42673 1.02620 1.65927 1.28161 1.19681 0.89999 1.26367 1.01745 0.90416 1.25644 0.97582 1.02518 1.01463 1.69832 1.07072 1.48981 1.36445 0.85099 0.77643 0.78283 0.78499 1.21426 1.22177 1.19080 1.46029 1.66529 1.14666 1.08986 1.20641 0.76851 0.86809 0.85075 1.90698 1.51565 1.17232 1.85545 1.20265 1.03617 0.95929 0.89654 0.87348 1.21824 0.98274 0.95210 1.03896 1.19621 0.92463 1.01299 0.98308 1.20834 0.98136 0.92573 0.93343 1.21447 0.97761 1.00861 0.97519 1.17416 0.94348 0.91080 0.87279 1.91519 1.97230 1.67017 1.55698 1.21112 1.00390 1.00399 0.99835 1.17306 0.82122 0.95116 0.95773 1.91511 1.49689 1.81057 1.89388 0.93354 0.90717 0.90671 0.89150 0.89296 0.93880 0.92391 0.95496 0.96305 0.79774 0.94018 0.75084 0.90866 0.89669 0.90213 0.82825 0.81661 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.87 2.57 44.99 0.12 2.98 16 3 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.11 -2.21 4.75 30.59 0.15 -2.07 16 5 C -0.11 -3.43 5.22 30.59 0.16 -3.27 16 6 C 0.15 5.80 6.26 86.38 0.54 6.34 16 7 N -0.75 -39.01 5.60 -343.45 -1.92 -40.94 16 8 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 11 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 12 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 N -0.71 -13.06 4.42 -442.54 -1.96 -15.02 16 17 C 0.52 11.40 6.99 87.66 0.61 12.02 16 18 O -0.57 -16.69 14.76 -3.03 -0.04 -16.74 16 19 C -0.07 -1.28 2.88 -12.28 -0.04 -1.31 16 20 H 0.11 2.00 7.12 -2.39 -0.02 1.98 16 21 C -0.13 -1.37 8.90 71.98 0.64 -0.73 16 22 C -0.12 -2.27 4.40 -19.81 -0.09 -2.36 16 23 C -0.03 -0.52 7.93 22.26 0.18 -0.34 16 24 C -0.16 -2.48 10.03 22.32 0.22 -2.26 16 25 C 0.12 2.20 7.30 22.37 0.16 2.36 16 26 F -0.14 -2.61 17.27 44.97 0.78 -1.84 16 27 C -0.20 -3.90 10.01 22.36 0.22 -3.68 16 28 C 0.12 2.54 7.24 22.37 0.16 2.70 16 29 F -0.14 -3.38 16.19 44.97 0.73 -2.65 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.78 7.75 -2.38 -0.02 1.76 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.37 20.73 7.67 -92.70 -0.71 20.01 16 40 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.41 5.73 8.02 -92.71 -0.74 4.99 16 42 H 0.07 0.64 7.40 -2.39 -0.02 0.62 16 43 H 0.08 0.61 7.56 -2.39 -0.02 0.60 16 44 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.15 2.12 7.51 -2.91 -0.02 2.10 16 46 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.35 397.78 4.46 -68.89 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.46 Total: 28.99 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.03 Total: -8.64 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.60 Total: -116.55 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.04 Total: -16.74 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.50 Total: -4.49 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -73.35 4.46 -68.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330987631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.118 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds