Wall clock time and date at job start Tue Mar 31 2020 23:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52783 * 109.55481 * 239.76929 * 2 1 3 5 5 N 1.46899 * 109.42218 * 186.61459 * 4 2 1 6 6 C 1.46900 * 110.99963 * 187.11591 * 5 4 2 7 7 C 1.50694 * 109.47355 * 45.69525 * 6 5 4 8 8 C 1.40015 * 120.31251 * 269.72717 * 7 6 5 9 9 N 1.31467 * 120.13468 * 179.70367 * 8 7 6 10 10 C 1.33416 * 120.85211 * 0.57398 * 9 8 7 11 11 C 1.40741 * 132.50530 * 179.69900 * 10 9 8 12 12 C 1.43202 * 126.51793 * 0.04149 * 11 10 9 13 13 N 8.53126 * 78.88512 * 278.12042 * 2 1 3 14 14 C 1.40558 * 106.95928 * 180.02562 * 11 10 9 15 15 N 1.30787 * 108.75222 * 0.02562 * 14 11 10 16 16 N 1.36715 * 120.77470 * 359.70596 * 10 9 8 17 17 C 1.35715 * 120.31725 * 90.00315 * 7 6 5 18 18 C 1.46894 * 111.27489 * 62.95969 * 5 4 2 19 19 C 1.53239 * 109.34064 * 296.90254 * 18 5 4 20 20 H 1.08997 * 109.62508 * 294.11074 * 19 18 5 21 21 C 1.53000 * 109.62879 * 173.53547 * 19 18 5 22 22 N 1.47077 * 108.52624 * 53.82573 * 19 18 5 23 23 C 1.36935 * 120.88487 * 128.81248 * 22 19 18 24 24 H 1.07994 * 120.00537 * 308.48862 * 23 22 19 25 25 C 1.38815 * 119.99706 * 128.48517 * 23 22 19 26 26 N 1.31620 * 120.00031 * 338.25307 * 25 23 22 27 27 Si 1.86796 * 120.00046 * 158.25478 * 25 23 22 28 28 H 1.48501 * 109.46984 * 269.99766 * 27 25 23 29 29 H 1.48496 * 109.47134 * 29.99688 * 27 25 23 30 30 H 1.48500 * 109.47215 * 149.99684 * 27 25 23 31 31 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 32 32 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 33 33 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 34 34 H 1.08997 * 109.56541 * 66.55500 * 4 2 1 35 35 H 1.08998 * 109.36163 * 306.53828 * 4 2 1 36 36 H 1.09006 * 109.47226 * 165.69558 * 6 5 4 37 37 H 1.09004 * 109.46821 * 285.69044 * 6 5 4 38 38 H 1.08000 * 119.93064 * 359.97262 * 8 7 6 39 39 H 1.07996 * 125.63056 * 179.97438 * 14 11 10 40 40 H 1.08000 * 120.42256 * 359.97438 * 17 7 6 41 41 H 1.08993 * 109.49702 * 176.93768 * 18 5 4 42 42 H 1.09003 * 109.48782 * 56.85520 * 18 5 4 43 43 H 1.09004 * 109.47199 * 300.96705 * 21 19 18 44 44 H 1.09005 * 109.47212 * 60.96828 * 21 19 18 45 45 H 1.09001 * 109.47144 * 180.97042 * 21 19 18 46 46 H 0.96996 * 120.00129 * 175.06966 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4149 7 6 3.4311 -0.6828 -3.5856 8 6 2.2565 -1.1681 -4.1732 9 7 1.7168 -0.5341 -5.1907 10 6 2.2802 0.5690 -5.6862 11 6 1.9269 1.4225 -6.7481 12 6 0.7884 1.2886 -7.6064 13 7 -0.1146 1.1825 -8.2873 14 6 2.9038 2.4315 -6.8056 15 7 3.7839 2.2189 -5.8617 16 7 3.4304 1.0712 -5.1440 17 6 4.0104 0.4388 -4.0839 18 6 3.8964 -1.6901 -0.0156 19 6 3.4619 -0.9994 1.2814 20 1 4.0202 -0.0718 1.4070 21 6 3.7240 -1.9264 2.4701 22 7 2.0240 -0.7028 1.1939 23 6 1.1671 -1.0761 2.1946 24 1 1.1625 -2.0963 2.5491 25 6 0.3044 -0.1433 2.7536 26 7 0.5736 1.1416 2.6590 27 14 -1.2385 -0.7115 3.6400 28 1 -2.3610 -0.8011 2.6719 29 1 -0.9987 -2.0463 4.2448 30 1 -1.5825 0.2613 4.7080 31 1 -0.3633 0.6279 0.8135 32 1 -0.3634 0.3905 -0.9506 33 1 -0.3634 -1.0185 0.1371 34 1 1.7785 -0.1528 -2.1337 35 1 1.5854 -1.7133 -1.2992 36 1 5.1300 -1.2596 -2.4301 37 1 3.8227 -2.4666 -2.4815 38 1 1.7905 -2.0625 -3.7870 39 1 2.9248 3.2473 -7.5129 40 1 4.9188 0.8257 -3.6464 41 1 4.9788 -1.8181 -0.0146 42 1 3.4145 -2.6652 -0.0875 43 1 3.1703 -2.8556 2.3352 44 1 4.7901 -2.1446 2.5326 45 1 3.3982 -1.4396 3.3893 46 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331564806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:19 Heat of formation + Delta-G solvation = 189.627113 kcal Electronic energy + Delta-G solvation = -29676.671204 eV Core-core repulsion = 25797.993122 eV Total energy + Delta-G solvation = -3878.678083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.83906 -39.42632 -38.12345 -36.45029 -35.45829 -34.24949 -33.04079 -31.99196 -31.09563 -30.06633 -27.84882 -26.69547 -26.12260 -25.20945 -24.68401 -23.48291 -22.54387 -21.22958 -20.37453 -19.48364 -19.18339 -18.02280 -17.40527 -16.66062 -16.31545 -15.75514 -15.49736 -14.96420 -14.76256 -14.48248 -14.33873 -14.07445 -13.75003 -13.60097 -13.50972 -13.35639 -13.07733 -12.90100 -12.79212 -12.56207 -12.14562 -11.99768 -11.67951 -11.60817 -11.46858 -11.40879 -11.17277 -10.90928 -10.74992 -10.53632 -10.48589 -10.24898 -10.17889 -9.97420 -9.87598 -9.77973 -9.55042 -8.33649 -8.20036 -8.02756 -6.47324 -5.77659 -3.57568 0.03290 0.41471 1.52879 1.80000 2.62205 2.79485 3.29510 3.37626 3.38556 3.39849 3.51304 3.58609 4.02384 4.15479 4.24648 4.35681 4.41077 4.49928 4.75891 4.99915 5.08615 5.12982 5.23607 5.31937 5.44978 5.59334 5.68629 5.72284 5.74817 5.87528 5.99627 6.02199 6.06816 6.19489 6.34247 6.36063 6.49463 6.59227 6.72473 6.84660 6.92124 7.06494 7.09313 7.15840 7.29408 7.38616 7.49590 7.58485 7.63495 7.81373 8.54426 9.14283 9.69140 10.46180 11.12132 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003100 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.829385 B = 9030.147390 C =10138.063172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.200 3.800 3 H 0.034 0.966 4 C 0.040 3.960 5 N -0.530 5.530 6 C 0.104 3.896 7 C -0.172 4.172 8 C 0.213 3.787 9 N -0.468 5.468 10 C 0.318 3.682 11 C -0.198 4.198 12 C 0.304 3.696 13 N -0.437 5.437 14 C 0.148 3.852 15 N -0.304 5.304 16 N -0.299 5.299 17 C 0.188 3.812 18 C 0.049 3.951 19 C 0.172 3.828 20 H 0.033 0.967 21 C -0.130 4.130 22 N -0.578 5.578 23 C -0.265 4.265 24 H 0.053 0.947 25 C 0.037 3.963 26 N -0.870 5.870 27 Si 0.878 3.122 28 H -0.282 1.282 29 H -0.275 1.275 30 H -0.290 1.290 31 H 0.087 0.913 32 H 0.020 0.980 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.184 0.816 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.066 0.934 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -3.171 -12.778 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.094 3.906 3 H 0.052 0.948 4 C -0.090 4.090 5 N -0.254 5.254 6 C -0.025 4.025 7 C -0.178 4.178 8 C 0.032 3.968 9 N -0.179 5.179 10 C 0.083 3.917 11 C -0.216 4.216 12 C -0.010 4.010 13 N -0.114 5.114 14 C -0.036 4.036 15 N -0.124 5.124 16 N -0.066 5.066 17 C 0.052 3.948 18 C -0.080 4.080 19 C 0.065 3.935 20 H 0.050 0.950 21 C -0.188 4.188 22 N -0.302 5.302 23 C -0.394 4.394 24 H 0.071 0.929 25 C -0.165 4.165 26 N -0.510 5.510 27 Si 0.706 3.294 28 H -0.209 1.209 29 H -0.200 1.200 30 H -0.216 1.216 31 H 0.105 0.895 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.201 0.799 39 H 0.226 0.774 40 H 0.207 0.793 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.449 -2.330 -13.647 16.762 hybrid contribution -0.931 -0.885 0.639 1.434 sum 8.518 -3.215 -13.009 15.878 Atomic orbital electron populations 1.21981 0.95687 1.02317 1.00084 1.20161 0.92810 0.93876 0.83778 0.94845 1.22900 0.86033 0.99515 1.00508 1.62183 1.12354 1.49958 1.00950 1.20968 0.99501 0.95749 0.86234 1.20547 0.98569 0.97563 1.01157 1.23655 0.89501 0.96693 0.86977 1.68262 1.30486 1.05890 1.13288 1.20368 0.85430 0.91803 0.94091 1.15032 1.00311 1.03118 1.03143 1.24048 0.91461 0.93376 0.92150 1.81247 1.10638 1.08337 1.11151 1.24046 0.88591 0.96370 0.94556 1.77724 1.24364 1.00053 1.10286 1.46893 1.18296 1.19433 1.21957 1.22059 0.98459 0.90230 0.84023 1.22752 0.98846 0.94543 0.91886 1.20539 0.87485 0.95116 0.90316 0.94953 1.21701 0.98044 0.99530 0.99557 1.44042 1.00697 1.68099 1.17407 1.18664 1.15669 0.92333 1.12747 0.92929 1.25455 1.00251 0.95195 0.95623 1.70203 1.33533 1.00032 1.47190 0.86721 0.84634 0.78507 0.79551 1.20886 1.19988 1.21631 0.89482 0.96065 0.93209 0.92758 0.95059 0.89154 0.92823 0.79903 0.77355 0.79255 0.91768 0.94973 0.93274 0.94552 0.91486 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.93 37.16 0.29 -2.79 16 2 C 0.20 4.24 3.16 -67.72 -0.21 4.02 16 3 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.04 0.64 4.06 -3.94 -0.02 0.63 16 5 N -0.53 -7.37 4.77 -236.07 -1.13 -8.50 16 6 C 0.10 0.97 5.43 -4.98 -0.03 0.94 16 7 C -0.17 -1.61 4.07 -104.86 -0.43 -2.03 16 8 C 0.21 2.16 9.09 -17.04 -0.15 2.00 16 9 N -0.47 -5.88 10.47 -11.97 -0.13 -6.01 16 10 C 0.32 3.98 7.88 -155.72 -1.23 2.75 16 11 C -0.20 -2.32 6.03 -106.15 -0.64 -2.96 16 12 C 0.30 4.04 15.84 -22.47 -0.36 3.68 16 13 N -0.44 -6.62 18.54 41.84 0.78 -5.84 16 14 C 0.15 1.34 11.93 -17.12 -0.20 1.14 16 15 N -0.30 -3.29 12.58 30.76 0.39 -2.90 16 16 N -0.30 -3.37 3.87 -11.95 -0.05 -3.42 16 17 C 0.19 1.76 10.94 -16.43 -0.18 1.58 16 18 C 0.05 0.72 4.87 -3.70 -0.02 0.70 16 19 C 0.17 3.28 3.66 -67.49 -0.25 3.04 16 20 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.13 -2.30 8.17 37.16 0.30 -2.00 16 22 N -0.58 -13.00 2.83 -157.27 -0.45 -13.45 16 23 C -0.26 -6.56 6.79 -15.06 -0.10 -6.66 16 24 H 0.05 1.33 7.14 -52.49 -0.37 0.96 16 25 C 0.04 0.96 3.22 -17.43 -0.06 0.90 16 26 N -0.87 -23.68 11.87 55.49 0.66 -23.02 16 27 Si 0.88 20.19 29.61 -169.99 -5.03 15.16 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.09 2.14 4.98 -51.93 -0.26 1.88 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.08 7.68 -51.93 -0.40 0.69 16 34 H 0.05 0.84 5.55 -51.93 -0.29 0.55 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.05 0.44 8.03 -51.93 -0.42 0.03 16 38 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.06 0.80 8.11 -51.93 -0.42 0.37 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.34 7.65 -51.93 -0.40 0.95 16 46 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -30.95 375.09 -8.88 -39.84 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -6.31 Total: -2.46 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.27 Total: 4.94 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.08 Total: -63.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.95 -8.88 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.463 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds