Wall clock time and date at job start Tue Mar 31 2020 23:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52783 * 109.55481 * 239.76929 * 2 1 3 5 5 N 1.46899 * 109.42218 * 186.61459 * 4 2 1 6 6 C 1.46900 * 110.99963 * 187.11591 * 5 4 2 7 7 C 1.50694 * 109.47355 * 45.69525 * 6 5 4 8 8 C 1.40015 * 120.31251 * 269.72717 * 7 6 5 9 9 N 1.31467 * 120.13468 * 179.70367 * 8 7 6 10 10 C 1.33416 * 120.85211 * 0.57398 * 9 8 7 11 11 C 1.40741 * 132.50530 * 179.69900 * 10 9 8 12 12 C 1.43202 * 126.51793 * 0.04149 * 11 10 9 13 13 N 8.53126 * 78.88512 * 278.12042 * 2 1 3 14 14 C 1.40558 * 106.95928 * 180.02562 * 11 10 9 15 15 N 1.30787 * 108.75222 * 0.02562 * 14 11 10 16 16 N 1.36715 * 120.77470 * 359.70596 * 10 9 8 17 17 C 1.35715 * 120.31725 * 90.00315 * 7 6 5 18 18 C 1.46894 * 111.27489 * 62.95969 * 5 4 2 19 19 C 1.53239 * 109.34064 * 296.90254 * 18 5 4 20 20 H 1.08997 * 109.62508 * 294.11074 * 19 18 5 21 21 C 1.53000 * 109.62879 * 173.53547 * 19 18 5 22 22 N 1.47077 * 108.52624 * 53.82573 * 19 18 5 23 23 C 1.36935 * 120.88487 * 128.81248 * 22 19 18 24 24 H 1.07994 * 120.00537 * 308.48862 * 23 22 19 25 25 C 1.38815 * 119.99706 * 128.48517 * 23 22 19 26 26 N 1.31620 * 120.00031 * 338.25307 * 25 23 22 27 27 Si 1.86796 * 120.00046 * 158.25478 * 25 23 22 28 28 H 1.48501 * 109.46984 * 269.99766 * 27 25 23 29 29 H 1.48496 * 109.47134 * 29.99688 * 27 25 23 30 30 H 1.48500 * 109.47215 * 149.99684 * 27 25 23 31 31 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 32 32 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 33 33 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 34 34 H 1.08997 * 109.56541 * 66.55500 * 4 2 1 35 35 H 1.08998 * 109.36163 * 306.53828 * 4 2 1 36 36 H 1.09006 * 109.47226 * 165.69558 * 6 5 4 37 37 H 1.09004 * 109.46821 * 285.69044 * 6 5 4 38 38 H 1.08000 * 119.93064 * 359.97262 * 8 7 6 39 39 H 1.07996 * 125.63056 * 179.97438 * 14 11 10 40 40 H 1.08000 * 120.42256 * 359.97438 * 17 7 6 41 41 H 1.08993 * 109.49702 * 176.93768 * 18 5 4 42 42 H 1.09003 * 109.48782 * 56.85520 * 18 5 4 43 43 H 1.09004 * 109.47199 * 300.96705 * 21 19 18 44 44 H 1.09005 * 109.47212 * 60.96828 * 21 19 18 45 45 H 1.09001 * 109.47144 * 180.97042 * 21 19 18 46 46 H 0.96996 * 120.00129 * 175.06966 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4149 7 6 3.4311 -0.6828 -3.5856 8 6 2.2565 -1.1681 -4.1732 9 7 1.7168 -0.5341 -5.1907 10 6 2.2802 0.5690 -5.6862 11 6 1.9269 1.4225 -6.7481 12 6 0.7884 1.2886 -7.6064 13 7 -0.1146 1.1825 -8.2873 14 6 2.9038 2.4315 -6.8056 15 7 3.7839 2.2189 -5.8617 16 7 3.4304 1.0712 -5.1440 17 6 4.0104 0.4388 -4.0839 18 6 3.8964 -1.6901 -0.0156 19 6 3.4619 -0.9994 1.2814 20 1 4.0202 -0.0718 1.4070 21 6 3.7240 -1.9264 2.4701 22 7 2.0240 -0.7028 1.1939 23 6 1.1671 -1.0761 2.1946 24 1 1.1625 -2.0963 2.5491 25 6 0.3044 -0.1433 2.7536 26 7 0.5736 1.1416 2.6590 27 14 -1.2385 -0.7115 3.6400 28 1 -2.3610 -0.8011 2.6719 29 1 -0.9987 -2.0463 4.2448 30 1 -1.5825 0.2613 4.7080 31 1 -0.3633 0.6279 0.8135 32 1 -0.3634 0.3905 -0.9506 33 1 -0.3634 -1.0185 0.1371 34 1 1.7785 -0.1528 -2.1337 35 1 1.5854 -1.7133 -1.2992 36 1 5.1300 -1.2596 -2.4301 37 1 3.8227 -2.4666 -2.4815 38 1 1.7905 -2.0625 -3.7870 39 1 2.9248 3.2473 -7.5129 40 1 4.9188 0.8257 -3.6464 41 1 4.9788 -1.8181 -0.0146 42 1 3.4145 -2.6652 -0.0875 43 1 3.1703 -2.8556 2.3352 44 1 4.7901 -2.1446 2.5326 45 1 3.3982 -1.4396 3.3893 46 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331564806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:18 Heat of formation + Delta-G solvation = 170.064794 kcal Electronic energy + Delta-G solvation = -29677.519490 eV Core-core repulsion = 25797.993122 eV Total energy + Delta-G solvation = -3879.526368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.63237 -40.46689 -39.24554 -37.49142 -36.74206 -35.18889 -34.50686 -33.43673 -32.36163 -30.94693 -29.44093 -27.84828 -27.43166 -26.29340 -25.97789 -24.52513 -23.49203 -22.36554 -21.84530 -20.82711 -20.23992 -18.86663 -18.22241 -18.06101 -17.49205 -16.96741 -16.57845 -16.23173 -16.08025 -16.01259 -15.32050 -15.11552 -14.93330 -14.74777 -14.66049 -14.52258 -14.35672 -13.93565 -13.75964 -13.61014 -13.36856 -13.33403 -13.26725 -12.97793 -12.76252 -12.57746 -12.45363 -12.37695 -12.27474 -12.15833 -12.07264 -11.90898 -11.53901 -11.47017 -11.17829 -10.97077 -10.63295 -10.10120 -9.24299 -9.06821 -8.37304 -7.65659 -5.53133 -0.73823 -0.36838 0.77087 1.01284 1.43339 1.48734 1.53252 1.63129 1.96906 2.50936 2.56004 2.62710 2.78131 3.12929 3.26203 3.32273 3.40198 3.58236 3.62935 3.81146 3.99730 4.27531 4.29739 4.33212 4.36859 4.53902 4.60410 4.68680 4.72664 4.74237 4.88262 4.91033 4.91889 4.96354 4.97903 5.00479 5.03706 5.05543 5.27867 5.28929 5.55039 5.61012 5.72517 5.77238 5.83210 6.15253 6.21220 6.29824 6.36579 6.59194 6.59641 7.28484 7.88299 8.58973 9.16200 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003100 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.829385 B = 9030.147390 C =10138.063172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.198 3.802 3 H -0.007 1.007 4 C 0.060 3.940 5 N -0.542 5.542 6 C 0.110 3.890 7 C -0.173 4.173 8 C 0.215 3.785 9 N -0.501 5.501 10 C 0.306 3.694 11 C -0.222 4.222 12 C 0.323 3.677 13 N -0.480 5.480 14 C 0.168 3.832 15 N -0.319 5.319 16 N -0.305 5.305 17 C 0.192 3.808 18 C 0.062 3.938 19 C 0.161 3.839 20 H 0.006 0.994 21 C -0.121 4.121 22 N -0.594 5.594 23 C -0.256 4.256 24 H 0.049 0.951 25 C -0.003 4.003 26 N -0.906 5.906 27 Si 0.925 3.075 28 H -0.283 1.283 29 H -0.267 1.267 30 H -0.299 1.299 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.203 0.797 39 H 0.249 0.751 40 H 0.216 0.784 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.575 -4.708 -13.905 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.092 3.908 3 H 0.011 0.989 4 C -0.069 4.069 5 N -0.267 5.267 6 C -0.017 4.017 7 C -0.179 4.179 8 C 0.035 3.965 9 N -0.213 5.213 10 C 0.070 3.930 11 C -0.240 4.240 12 C 0.009 3.991 13 N -0.158 5.158 14 C -0.016 4.016 15 N -0.139 5.139 16 N -0.071 5.071 17 C 0.056 3.944 18 C -0.066 4.066 19 C 0.055 3.945 20 H 0.024 0.976 21 C -0.179 4.179 22 N -0.320 5.320 23 C -0.386 4.386 24 H 0.066 0.934 25 C -0.202 4.202 26 N -0.548 5.548 27 Si 0.753 3.247 28 H -0.209 1.209 29 H -0.191 1.191 30 H -0.226 1.226 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.140 0.860 37 H 0.093 0.907 38 H 0.220 0.780 39 H 0.265 0.735 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.701 -3.906 -14.775 19.248 hybrid contribution -1.510 -0.400 1.023 1.867 sum 10.191 -4.306 -13.752 17.650 Atomic orbital electron populations 1.21854 0.96502 1.01221 0.99810 1.20069 0.92346 0.92499 0.85931 0.98947 1.22458 0.87931 0.98904 0.97652 1.62056 1.10543 1.51098 1.02984 1.21072 1.00835 0.96551 0.83264 1.20567 0.98353 0.97669 1.01282 1.24062 0.89538 0.96817 0.86082 1.68285 1.31621 1.06652 1.14737 1.20557 0.85987 0.92018 0.94399 1.15210 1.00717 1.04492 1.03537 1.24262 0.91177 0.92160 0.91452 1.81251 1.11980 1.09866 1.12730 1.24668 0.86724 0.96128 0.94063 1.77713 1.25071 1.00216 1.10875 1.47059 1.18095 1.19594 1.22379 1.22605 0.98914 0.89791 0.83073 1.22512 1.00843 0.93664 0.89628 1.20748 0.85158 0.94836 0.93750 0.97624 1.21594 1.00402 0.98570 0.97309 1.44320 1.02157 1.68007 1.17474 1.18802 1.15501 0.91900 1.12397 0.93369 1.25938 1.02423 0.95153 0.96677 1.70301 1.34215 1.00916 1.49416 0.85954 0.82228 0.78088 0.78390 1.20917 1.19101 1.22611 0.92646 0.94233 0.93669 0.91902 0.94603 0.86010 0.90652 0.78035 0.73487 0.76718 0.88160 0.94632 0.93311 0.90786 0.94958 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 7.93 71.98 0.57 -5.38 16 2 C 0.20 8.40 3.16 44.81 0.14 8.54 16 3 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 4 C 0.06 1.82 4.06 86.23 0.35 2.17 16 5 N -0.54 -13.20 4.77 -900.78 -4.30 -17.50 16 6 C 0.11 1.50 5.43 85.56 0.46 1.96 16 7 C -0.17 -2.61 4.07 -20.02 -0.08 -2.69 16 8 C 0.21 3.79 9.09 85.18 0.77 4.57 16 9 N -0.50 -11.89 10.47 -191.79 -2.01 -13.90 16 10 C 0.31 7.24 7.88 133.92 1.06 8.30 16 11 C -0.22 -4.93 6.03 -20.85 -0.13 -5.06 16 12 C 0.32 8.48 15.84 88.33 1.40 9.88 16 13 N -0.48 -14.67 18.54 19.00 0.35 -14.31 16 14 C 0.17 2.69 11.93 85.41 1.02 3.71 16 15 N -0.32 -6.19 12.58 -56.59 -0.71 -6.90 16 16 N -0.31 -6.21 3.87 -191.71 -0.74 -6.95 16 17 C 0.19 2.98 10.94 83.40 0.91 3.89 16 18 C 0.06 1.61 4.87 86.38 0.42 2.03 16 19 C 0.16 5.96 3.66 44.96 0.16 6.12 16 20 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 21 C -0.12 -4.10 8.17 71.98 0.59 -3.51 16 22 N -0.59 -26.80 2.83 -651.49 -1.85 -28.65 16 23 C -0.26 -12.82 6.79 84.03 0.57 -12.25 16 24 H 0.05 2.45 7.14 -2.91 -0.02 2.43 16 25 C 0.00 -0.15 3.22 84.86 0.27 0.13 16 26 N -0.91 -51.30 11.87 21.65 0.26 -51.05 16 27 Si 0.93 42.36 29.61 68.60 2.03 44.39 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.05 2.81 4.98 -2.39 -0.01 2.79 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.97 7.68 -2.39 -0.02 1.95 16 34 H 0.06 1.80 5.55 -2.39 -0.01 1.79 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.00 8.09 -2.38 -0.02 0.98 16 37 H 0.08 0.80 8.03 -2.38 -0.02 0.78 16 38 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.25 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.10 1.93 8.11 -2.39 -0.02 1.91 16 42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.64 7.60 -2.39 -0.02 1.62 16 44 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.03 1.29 7.65 -2.39 -0.02 1.27 16 46 H 0.25 13.75 8.32 -92.71 -0.77 12.97 16 Total: -1.00 -71.55 375.09 2.54 -69.01 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.00 Total: 3.45 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 8.50 Total: 22.41 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -9.00 Total: -139.26 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -71.55 2.54 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.079 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds