Wall clock time and date at job start Tue Mar 31 2020 23:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.78271 * 2 1 4 4 C 1.53241 * 109.62532 * 120.47960 * 2 1 3 5 5 N 1.46904 * 109.33594 * 65.88484 * 4 2 1 6 6 C 1.46906 * 110.99644 * 187.25180 * 5 4 2 7 7 C 1.50694 * 109.46709 * 169.99836 * 6 5 4 8 8 C 1.40015 * 120.31752 * 89.99904 * 7 6 5 9 9 N 1.31471 * 120.13875 * 180.02562 * 8 7 6 10 10 C 1.33411 * 120.85056 * 0.02562 * 9 8 7 11 11 C 1.40739 * 132.50189 * 180.02562 * 10 9 8 12 12 C 1.43199 * 126.52240 * 359.95428 * 11 10 9 13 13 N 9.70387 * 98.75382 * 236.41097 * 4 1 2 14 14 C 1.40560 * 106.95808 * 179.97438 * 11 10 9 15 15 N 1.30790 * 108.75138 * 359.97438 * 14 11 10 16 16 N 1.36721 * 120.77635 * 359.97438 * 10 9 8 17 17 C 1.35715 * 120.31719 * 270.01911 * 7 6 5 18 18 C 1.46896 * 111.27221 * 63.10399 * 5 4 2 19 19 C 1.53245 * 109.33892 * 296.89284 * 18 5 4 20 20 H 1.08998 * 109.62540 * 294.12490 * 19 18 5 21 21 C 1.52997 * 109.78833 * 173.63310 * 19 18 5 22 22 N 1.47077 * 109.63167 * 239.51273 * 2 1 3 23 23 C 1.36934 * 120.88468 * 111.45374 * 22 2 1 24 24 H 1.07993 * 120.00528 * 151.87094 * 23 22 2 25 25 C 1.38815 * 119.99810 * 331.88115 * 23 22 2 26 26 N 1.31626 * 119.99957 * 342.76439 * 25 23 22 27 27 Si 1.86797 * 120.00063 * 162.77307 * 25 23 22 28 28 H 1.48498 * 109.47377 * 59.99546 * 27 25 23 29 29 H 1.48507 * 109.47052 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47157 * 299.99233 * 27 25 23 31 31 H 1.08996 * 109.46975 * 299.52167 * 1 2 3 32 32 H 1.09001 * 109.46641 * 59.51387 * 1 2 3 33 33 H 1.08991 * 109.47051 * 179.51272 * 1 2 3 34 34 H 1.08993 * 109.49833 * 305.92443 * 4 2 1 35 35 H 1.09000 * 109.51250 * 185.85338 * 4 2 1 36 36 H 1.08998 * 109.47347 * 49.99823 * 6 5 4 37 37 H 1.09003 * 109.47004 * 289.99480 * 6 5 4 38 38 H 1.08003 * 119.92728 * 359.74543 * 8 7 6 39 39 H 1.08000 * 125.62829 * 179.97438 * 14 11 10 40 40 H 1.08004 * 120.42331 * 359.95888 * 17 7 6 41 41 H 1.09000 * 109.49345 * 56.85214 * 18 5 4 42 42 H 1.08998 * 109.49299 * 176.93642 * 18 5 4 43 43 H 1.09000 * 109.47276 * 296.62213 * 21 19 18 44 44 H 1.09000 * 109.47050 * 56.62618 * 21 19 18 45 45 H 1.09003 * 109.46874 * 176.62269 * 21 19 18 46 46 H 0.97005 * 119.99683 * 175.09002 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 1.2439 5 7 1.6746 -2.1514 1.1609 6 6 1.9977 -2.8535 2.4102 7 6 1.3882 -4.2314 2.3840 8 6 2.1099 -5.3137 1.8660 9 7 1.5745 -6.5143 1.8444 10 6 0.3424 -6.7225 2.3116 11 6 -0.4554 -7.8779 2.4081 12 6 -0.0950 -9.1996 1.9913 13 7 0.1912 -10.2482 1.6611 14 6 -1.6734 -7.4876 2.9910 15 7 -1.6309 -6.2032 3.2337 16 7 -0.3944 -5.6917 2.8254 17 6 0.1344 -4.4352 2.8618 18 6 2.3147 -2.8027 0.0103 19 6 1.8111 -2.1553 -1.2842 20 1 0.7481 -2.3625 -1.4075 21 6 2.5859 -2.7151 -2.4787 22 7 2.0241 -0.7028 -1.1937 23 6 2.6651 -0.0229 -2.1947 24 1 3.3964 -0.5279 -2.8083 25 6 2.3751 1.3157 -2.4207 26 7 1.2744 1.8429 -1.9276 27 14 3.5467 2.3687 -3.4246 28 1 3.6826 1.7959 -4.7879 29 1 3.0120 3.7509 -3.5198 30 1 4.8767 2.3964 -2.7645 31 1 -0.3633 0.5064 0.8942 32 1 -0.3633 0.5214 -0.8856 33 1 -0.3633 -1.0275 -0.0087 34 1 1.5991 -0.2916 2.1357 35 1 3.1296 -0.6417 1.2968 36 1 1.5961 -2.2946 3.2555 37 1 3.0799 -2.9367 2.5108 38 1 3.1067 -5.1611 1.4793 39 1 -2.5070 -8.1407 3.2034 40 1 -0.4374 -3.6126 3.2655 41 1 3.3959 -2.6833 0.0799 42 1 2.0649 -3.8636 0.0075 43 1 3.6385 -2.4471 -2.3869 44 1 2.4878 -3.8005 -2.4992 45 1 2.1835 -2.2964 -3.4012 46 1 1.1064 2.7934 -2.0243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331564808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:24 Heat of formation + Delta-G solvation = 188.113366 kcal Electronic energy + Delta-G solvation = -29565.968097 eV Core-core repulsion = 25687.224373 eV Total energy + Delta-G solvation = -3878.743724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.83872 -39.35826 -38.20581 -36.47953 -35.36806 -34.23685 -32.66559 -32.28090 -30.86285 -30.07349 -27.99704 -26.67041 -26.23669 -25.19882 -24.29017 -23.51259 -22.65651 -21.51060 -20.82197 -19.44344 -18.73216 -18.01296 -17.43026 -16.69082 -16.30745 -15.81504 -15.42456 -14.90332 -14.69177 -14.56395 -14.25609 -13.97556 -13.71829 -13.58622 -13.42471 -13.32722 -13.22483 -12.87086 -12.72231 -12.54249 -12.30104 -11.95496 -11.69945 -11.61454 -11.42081 -11.27631 -11.00113 -10.98597 -10.70352 -10.63768 -10.51437 -10.23856 -10.11603 -10.02954 -9.89298 -9.57664 -9.31343 -8.52726 -8.32078 -8.03592 -6.71166 -5.80141 -3.26250 0.01397 0.41472 1.51449 1.77846 2.59479 2.78410 3.34569 3.35729 3.41320 3.42231 3.48790 3.56972 4.02637 4.15358 4.23846 4.40027 4.45682 4.49892 4.76227 4.98451 5.07212 5.17435 5.29015 5.36862 5.42354 5.59585 5.66713 5.72364 5.73023 5.91943 5.97646 5.98478 6.08455 6.20166 6.22771 6.31474 6.50215 6.72931 6.87446 6.90525 6.93315 6.98238 7.13538 7.13941 7.30511 7.34263 7.55653 7.62440 7.74756 7.89648 8.39582 9.18418 9.79786 10.37812 11.24836 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002687 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.033071 B =10418.757925 C =10934.166700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.199 3.801 3 H 0.093 0.907 4 C 0.042 3.958 5 N -0.527 5.527 6 C 0.102 3.898 7 C -0.166 4.166 8 C 0.211 3.789 9 N -0.470 5.470 10 C 0.318 3.682 11 C -0.200 4.200 12 C 0.305 3.695 13 N -0.438 5.438 14 C 0.148 3.852 15 N -0.304 5.304 16 N -0.299 5.299 17 C 0.190 3.810 18 C 0.045 3.955 19 C 0.172 3.828 20 H 0.031 0.969 21 C -0.138 4.138 22 N -0.583 5.583 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.896 5.896 27 Si 0.896 3.104 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.184 0.816 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -10.251 12.813 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.092 3.908 3 H 0.110 0.890 4 C -0.086 4.086 5 N -0.251 5.251 6 C -0.027 4.027 7 C -0.172 4.172 8 C 0.030 3.970 9 N -0.181 5.181 10 C 0.083 3.917 11 C -0.218 4.218 12 C -0.010 4.010 13 N -0.115 5.115 14 C -0.036 4.036 15 N -0.125 5.125 16 N -0.065 5.065 17 C 0.054 3.946 18 C -0.085 4.085 19 C 0.065 3.935 20 H 0.049 0.951 21 C -0.196 4.196 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.087 0.913 25 C -0.194 4.194 26 N -0.540 5.540 27 Si 0.726 3.274 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.201 0.799 39 H 0.226 0.774 40 H 0.207 0.793 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.139 -11.597 12.342 17.070 hybrid contribution 1.306 1.189 -0.289 1.790 sum -0.833 -10.408 12.053 15.947 Atomic orbital electron populations 1.21979 0.97830 0.99183 1.00622 1.20362 0.92678 0.95610 0.82102 0.88968 1.22912 0.97932 0.86505 1.01292 1.62052 1.59140 1.03152 1.00805 1.20904 0.98070 0.88415 0.95339 1.20573 0.94237 0.99150 1.03281 1.23638 0.99677 0.85900 0.87789 1.68255 1.07510 1.23994 1.18335 1.20356 0.88628 0.88646 0.94066 1.15027 0.96876 0.86463 1.23453 1.24050 0.93407 0.91108 0.92421 1.81245 1.07523 1.11505 1.11211 1.24046 0.96023 0.91916 0.91587 1.77731 0.96537 1.11042 1.27195 1.46907 1.12937 1.07564 1.39094 1.22076 0.93223 0.84728 0.94598 1.22776 0.96299 0.96926 0.92462 1.20431 0.96443 0.85988 0.90609 0.95112 1.21800 1.00759 0.97853 0.99203 1.44261 1.66940 1.01000 1.18440 1.19146 1.14736 0.93561 1.10552 0.91259 1.24995 0.96071 0.99061 0.99304 1.70045 1.22492 1.11708 1.49750 0.86485 0.80821 0.79845 0.80274 1.21011 1.21742 1.21257 0.96070 0.90580 0.94895 0.91807 0.95292 0.89150 0.92807 0.79903 0.77388 0.79346 0.94791 0.92523 0.92648 0.94301 0.91938 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.98 37.16 0.33 -2.48 16 2 C 0.20 4.12 2.35 -67.49 -0.16 3.96 16 3 H 0.09 2.21 6.25 -51.93 -0.32 1.89 16 4 C 0.04 0.67 5.01 -3.70 -0.02 0.65 16 5 N -0.53 -7.15 4.12 -235.76 -0.97 -8.12 16 6 C 0.10 0.93 5.13 -4.98 -0.03 0.91 16 7 C -0.17 -1.47 4.85 -104.86 -0.51 -1.98 16 8 C 0.21 1.97 9.15 -17.04 -0.16 1.81 16 9 N -0.47 -5.55 10.47 -11.97 -0.13 -5.68 16 10 C 0.32 3.79 7.88 -155.72 -1.23 2.56 16 11 C -0.20 -2.23 6.03 -106.15 -0.64 -2.87 16 12 C 0.30 3.87 15.84 -22.48 -0.36 3.51 16 13 N -0.44 -6.38 18.54 41.84 0.78 -5.61 16 14 C 0.15 1.28 11.93 -17.12 -0.20 1.07 16 15 N -0.30 -3.19 12.58 30.76 0.39 -2.80 16 16 N -0.30 -3.23 3.87 -11.95 -0.05 -3.27 16 17 C 0.19 1.71 10.94 -16.43 -0.18 1.53 16 18 C 0.04 0.66 4.66 -3.70 -0.02 0.64 16 19 C 0.17 3.24 3.24 -67.49 -0.22 3.02 16 20 H 0.03 0.64 7.60 -51.93 -0.39 0.25 16 21 C -0.14 -2.41 7.96 37.16 0.30 -2.11 16 22 N -0.58 -12.94 2.72 -157.00 -0.43 -13.37 16 23 C -0.25 -6.23 8.71 -15.06 -0.13 -6.36 16 24 H 0.07 1.70 6.17 -52.49 -0.32 1.38 16 25 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 26 N -0.90 -23.84 9.81 55.49 0.54 -23.29 16 27 Si 0.90 20.53 29.59 -169.99 -5.03 15.50 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 1.84 6.77 -51.93 -0.35 1.49 16 33 H 0.03 0.65 7.06 -51.93 -0.37 0.29 16 34 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 37 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.18 1.28 7.95 -52.48 -0.42 0.87 16 39 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.19 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.74 5.66 -51.93 -0.29 0.44 16 43 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.19 7.79 -51.93 -0.40 0.79 16 46 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -30.41 374.18 -8.73 -39.13 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.17 Total: -2.04 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.30 Total: 3.90 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.14 Total: -62.13 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.41 -8.73 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.247 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds