Wall clock time and date at job start Tue Mar 31 2020 23:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.78271 * 2 1 4 4 C 1.53241 * 109.62532 * 120.47960 * 2 1 3 5 5 N 1.46904 * 109.33594 * 65.88484 * 4 2 1 6 6 C 1.46906 * 110.99644 * 187.25180 * 5 4 2 7 7 C 1.50694 * 109.46709 * 169.99836 * 6 5 4 8 8 C 1.40015 * 120.31752 * 89.99904 * 7 6 5 9 9 N 1.31471 * 120.13875 * 180.02562 * 8 7 6 10 10 C 1.33411 * 120.85056 * 0.02562 * 9 8 7 11 11 C 1.40739 * 132.50189 * 180.02562 * 10 9 8 12 12 C 1.43199 * 126.52240 * 359.95428 * 11 10 9 13 13 N 9.70387 * 98.75382 * 236.41097 * 4 1 2 14 14 C 1.40560 * 106.95808 * 179.97438 * 11 10 9 15 15 N 1.30790 * 108.75138 * 359.97438 * 14 11 10 16 16 N 1.36721 * 120.77635 * 359.97438 * 10 9 8 17 17 C 1.35715 * 120.31719 * 270.01911 * 7 6 5 18 18 C 1.46896 * 111.27221 * 63.10399 * 5 4 2 19 19 C 1.53245 * 109.33892 * 296.89284 * 18 5 4 20 20 H 1.08998 * 109.62540 * 294.12490 * 19 18 5 21 21 C 1.52997 * 109.78833 * 173.63310 * 19 18 5 22 22 N 1.47077 * 109.63167 * 239.51273 * 2 1 3 23 23 C 1.36934 * 120.88468 * 111.45374 * 22 2 1 24 24 H 1.07993 * 120.00528 * 151.87094 * 23 22 2 25 25 C 1.38815 * 119.99810 * 331.88115 * 23 22 2 26 26 N 1.31626 * 119.99957 * 342.76439 * 25 23 22 27 27 Si 1.86797 * 120.00063 * 162.77307 * 25 23 22 28 28 H 1.48498 * 109.47377 * 59.99546 * 27 25 23 29 29 H 1.48507 * 109.47052 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47157 * 299.99233 * 27 25 23 31 31 H 1.08996 * 109.46975 * 299.52167 * 1 2 3 32 32 H 1.09001 * 109.46641 * 59.51387 * 1 2 3 33 33 H 1.08991 * 109.47051 * 179.51272 * 1 2 3 34 34 H 1.08993 * 109.49833 * 305.92443 * 4 2 1 35 35 H 1.09000 * 109.51250 * 185.85338 * 4 2 1 36 36 H 1.08998 * 109.47347 * 49.99823 * 6 5 4 37 37 H 1.09003 * 109.47004 * 289.99480 * 6 5 4 38 38 H 1.08003 * 119.92728 * 359.74543 * 8 7 6 39 39 H 1.08000 * 125.62829 * 179.97438 * 14 11 10 40 40 H 1.08004 * 120.42331 * 359.95888 * 17 7 6 41 41 H 1.09000 * 109.49345 * 56.85214 * 18 5 4 42 42 H 1.08998 * 109.49299 * 176.93642 * 18 5 4 43 43 H 1.09000 * 109.47276 * 296.62213 * 21 19 18 44 44 H 1.09000 * 109.47050 * 56.62618 * 21 19 18 45 45 H 1.09003 * 109.46874 * 176.62269 * 21 19 18 46 46 H 0.97005 * 119.99683 * 175.09002 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 1.2439 5 7 1.6746 -2.1514 1.1609 6 6 1.9977 -2.8535 2.4102 7 6 1.3882 -4.2314 2.3840 8 6 2.1099 -5.3137 1.8660 9 7 1.5745 -6.5143 1.8444 10 6 0.3424 -6.7225 2.3116 11 6 -0.4554 -7.8779 2.4081 12 6 -0.0950 -9.1996 1.9913 13 7 0.1912 -10.2482 1.6611 14 6 -1.6734 -7.4876 2.9910 15 7 -1.6309 -6.2032 3.2337 16 7 -0.3944 -5.6917 2.8254 17 6 0.1344 -4.4352 2.8618 18 6 2.3147 -2.8027 0.0103 19 6 1.8111 -2.1553 -1.2842 20 1 0.7481 -2.3625 -1.4075 21 6 2.5859 -2.7151 -2.4787 22 7 2.0241 -0.7028 -1.1937 23 6 2.6651 -0.0229 -2.1947 24 1 3.3964 -0.5279 -2.8083 25 6 2.3751 1.3157 -2.4207 26 7 1.2744 1.8429 -1.9276 27 14 3.5467 2.3687 -3.4246 28 1 3.6826 1.7959 -4.7879 29 1 3.0120 3.7509 -3.5198 30 1 4.8767 2.3964 -2.7645 31 1 -0.3633 0.5064 0.8942 32 1 -0.3633 0.5214 -0.8856 33 1 -0.3633 -1.0275 -0.0087 34 1 1.5991 -0.2916 2.1357 35 1 3.1296 -0.6417 1.2968 36 1 1.5961 -2.2946 3.2555 37 1 3.0799 -2.9367 2.5108 38 1 3.1067 -5.1611 1.4793 39 1 -2.5070 -8.1407 3.2034 40 1 -0.4374 -3.6126 3.2655 41 1 3.3959 -2.6833 0.0799 42 1 2.0649 -3.8636 0.0075 43 1 3.6385 -2.4471 -2.3869 44 1 2.4878 -3.8005 -2.4992 45 1 2.1835 -2.2964 -3.4012 46 1 1.1064 2.7934 -2.0243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331564808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:23 Heat of formation + Delta-G solvation = 170.019863 kcal Electronic energy + Delta-G solvation = -29566.752690 eV Core-core repulsion = 25687.224373 eV Total energy + Delta-G solvation = -3879.528317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.58490 -40.39283 -39.25970 -37.46754 -36.59020 -35.12294 -34.19720 -33.57072 -32.13593 -30.91872 -29.61232 -27.81220 -27.38906 -26.00590 -25.86978 -24.58757 -23.58819 -22.49430 -22.26201 -20.34135 -20.18692 -18.81279 -18.19655 -17.99939 -17.37182 -17.06841 -16.46626 -16.24038 -15.89609 -15.64304 -15.48163 -15.08912 -14.96056 -14.71219 -14.52420 -14.45503 -14.31338 -13.74478 -13.69754 -13.64471 -13.50352 -13.25793 -13.21895 -12.84533 -12.71828 -12.53200 -12.38440 -12.29650 -12.20312 -12.12413 -12.10009 -11.87787 -11.57110 -11.21478 -11.01927 -10.89120 -10.62942 -10.38131 -9.18516 -9.08964 -8.49485 -7.71557 -5.18352 -0.70317 -0.32660 0.79929 1.03660 1.50052 1.52342 1.57252 1.65698 2.00612 2.58359 2.58750 2.66158 2.80860 3.15041 3.36732 3.40141 3.43634 3.66142 3.67486 3.83881 4.04084 4.27392 4.31639 4.37526 4.40987 4.56771 4.63462 4.67694 4.73523 4.81791 4.86671 4.89110 4.90596 4.97088 5.05275 5.08136 5.15076 5.29808 5.31732 5.39739 5.46133 5.57686 5.76124 5.83555 6.09873 6.18114 6.25197 6.33358 6.40060 6.53412 6.61762 7.30878 8.01323 8.53173 9.29604 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002687 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.033071 B =10418.757925 C =10934.166700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.194 3.806 3 H 0.053 0.947 4 C 0.058 3.942 5 N -0.535 5.535 6 C 0.108 3.892 7 C -0.164 4.164 8 C 0.215 3.785 9 N -0.500 5.500 10 C 0.308 3.692 11 C -0.223 4.223 12 C 0.324 3.676 13 N -0.481 5.481 14 C 0.167 3.833 15 N -0.321 5.321 16 N -0.305 5.305 17 C 0.193 3.807 18 C 0.059 3.941 19 C 0.164 3.836 20 H 0.008 0.992 21 C -0.131 4.131 22 N -0.599 5.599 23 C -0.248 4.248 24 H 0.069 0.931 25 C -0.046 4.046 26 N -0.920 5.920 27 Si 0.948 3.052 28 H -0.284 1.284 29 H -0.300 1.300 30 H -0.282 1.282 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.206 0.794 39 H 0.248 0.752 40 H 0.213 0.787 41 H 0.037 0.963 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -11.143 14.832 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.071 0.929 4 C -0.071 4.071 5 N -0.260 5.260 6 C -0.021 4.021 7 C -0.170 4.170 8 C 0.036 3.964 9 N -0.212 5.212 10 C 0.072 3.928 11 C -0.241 4.241 12 C 0.010 3.990 13 N -0.159 5.159 14 C -0.016 4.016 15 N -0.141 5.141 16 N -0.071 5.071 17 C 0.057 3.943 18 C -0.071 4.071 19 C 0.058 3.942 20 H 0.025 0.975 21 C -0.189 4.189 22 N -0.322 5.322 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.242 4.242 26 N -0.566 5.566 27 Si 0.778 3.222 28 H -0.211 1.211 29 H -0.227 1.227 30 H -0.208 1.208 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.223 0.777 39 H 0.264 0.736 40 H 0.229 0.771 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.725 -12.504 14.378 19.132 hybrid contribution 1.142 1.455 -0.908 2.060 sum -0.583 -11.049 13.470 17.432 Atomic orbital electron populations 1.21757 0.98031 0.98754 0.99368 1.20307 0.92428 0.94515 0.84020 0.92892 1.22551 0.97570 0.87655 0.99284 1.61906 1.59371 1.02223 1.02474 1.20967 0.99518 0.88053 0.93521 1.20515 0.94184 0.98847 1.03477 1.24069 1.00400 0.85329 0.86650 1.68297 1.07861 1.25302 1.19760 1.20546 0.88958 0.89230 0.94104 1.15193 0.98143 0.85705 1.25057 1.24253 0.92268 0.91119 0.91328 1.81252 1.08926 1.12783 1.12973 1.24656 0.95975 0.91597 0.89415 1.77721 0.96640 1.11793 1.27940 1.47059 1.12974 1.07897 1.39139 1.22573 0.93417 0.84704 0.93613 1.22511 0.96246 0.97520 0.90790 1.20617 0.95525 0.84435 0.93648 0.97457 1.21716 1.00042 0.99629 0.97499 1.44515 1.66854 1.02442 1.18423 1.19408 1.14194 0.93747 1.10517 0.91384 1.25574 0.97365 1.00277 1.00966 1.70207 1.23758 1.11074 1.51545 0.85644 0.79393 0.78041 0.79086 1.21089 1.22686 1.20798 0.94188 0.94974 0.94545 0.89200 0.95647 0.86620 0.90864 0.77695 0.73615 0.77081 0.94463 0.90335 0.92885 0.91203 0.94543 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 8.98 71.98 0.65 -4.28 16 2 C 0.19 7.96 2.35 44.96 0.11 8.07 16 3 H 0.05 2.60 6.25 -2.39 -0.01 2.58 16 4 C 0.06 1.69 5.01 86.38 0.43 2.12 16 5 N -0.54 -12.62 4.12 -899.81 -3.71 -16.32 16 6 C 0.11 1.45 5.13 85.55 0.44 1.89 16 7 C -0.16 -2.25 4.85 -20.02 -0.10 -2.35 16 8 C 0.22 3.30 9.15 85.18 0.78 4.08 16 9 N -0.50 -10.76 10.47 -191.79 -2.01 -12.77 16 10 C 0.31 6.73 7.88 133.92 1.06 7.79 16 11 C -0.22 -4.62 6.03 -20.86 -0.13 -4.75 16 12 C 0.32 7.99 15.84 88.33 1.40 9.39 16 13 N -0.48 -13.96 18.54 19.00 0.35 -13.61 16 14 C 0.17 2.49 11.93 85.41 1.02 3.51 16 15 N -0.32 -5.89 12.58 -56.59 -0.71 -6.61 16 16 N -0.30 -5.79 3.87 -191.71 -0.74 -6.53 16 17 C 0.19 2.79 10.94 83.40 0.91 3.70 16 18 C 0.06 1.55 4.66 86.39 0.40 1.96 16 19 C 0.16 6.01 3.24 44.96 0.15 6.15 16 20 H 0.01 0.32 7.60 -2.39 -0.02 0.30 16 21 C -0.13 -4.44 7.96 71.98 0.57 -3.87 16 22 N -0.60 -26.60 2.72 -650.64 -1.77 -28.37 16 23 C -0.25 -12.51 8.71 84.03 0.73 -11.78 16 24 H 0.07 3.38 6.17 -2.91 -0.02 3.36 16 25 C -0.05 -2.42 4.91 84.86 0.42 -2.00 16 26 N -0.92 -50.72 9.81 21.65 0.21 -50.51 16 27 Si 0.95 43.15 29.59 68.60 2.03 45.18 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.58 6.77 -2.39 -0.02 1.56 16 33 H 0.04 1.42 7.06 -2.39 -0.02 1.41 16 34 H 0.09 2.15 7.99 -2.39 -0.02 2.14 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 1.07 7.91 -2.39 -0.02 1.05 16 37 H 0.07 0.80 8.08 -2.39 -0.02 0.79 16 38 H 0.21 2.05 7.95 -2.91 -0.02 2.03 16 39 H 0.25 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.75 5.66 -2.39 -0.01 1.74 16 43 H 0.05 1.81 7.32 -2.39 -0.02 1.79 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.39 7.79 -2.39 -0.02 1.37 16 46 H 0.24 13.32 8.32 -92.70 -0.77 12.55 16 Total: -1.00 -69.64 374.18 3.50 -66.14 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.01 Total: 3.78 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 8.84 Total: 19.63 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -8.38 Total: -134.72 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -69.64 3.50 -66.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331564808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.157 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds